CMJ_chr3_010540.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr3_010540.1
Unique Name	CMJ_chr3_010540.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	348

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cmjdvaR115	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
cmjdvbR109	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
cmjfhsR203	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmjzkR214	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
cmcmjL209	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmjcsnR264	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjcsnR272	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjeglR0427	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR0511	Citrus glauca CRC3463 genome v1	Citrus glauca
cllcmjL155	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cmjcmxR190	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmxR215	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmmR193	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
caacmjL350	Citrus australasica cv. AZM genome v1.0	Citrus australasica
cigcmjL252	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cmhcmjL146	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmjcsjR269	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR292	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjneiR156	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cmjcraR257	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR272	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cchcmjL108	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
ciucmjL164	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL540	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgacmjL166	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL552	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL556	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cmjcumR207	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
cmjcrcR168	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcstR159	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
cmjcrmR246	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR260	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcriR258	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR283	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Orthologs


Gene/Transcript	Assembly	Species
Cms002290.1	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
Pt5g017590.1	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
hap1-g8806.t1	Citrus inodora genome v1.0 (UQ)	Citrus inodora

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Cmt114090.1	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr3_010540	CMJ_chr3_010540_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_010540.1.exon1	CMJ_chr3_010540.1.exon1_cmj_v1	Citrus maxima	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_010540.1.utr3.1	CMJ_chr3_010540.1.utr3.1_cmj_v1	Citrus maxima	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_010540.1.cds.1	CMJ_chr3_010540.1.cds.1_cmj_v1	Citrus maxima	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_010540.1_cmj_v1	CMJ_chr3_010540.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr3_010540.1_cmj_v1	CMJ_chr3_010540.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

[Close]

BLAST of CMJ_chr3_010540.1 vs. ExPASy TrEMBL
Match: A0A2H5QGB2|A0A2H5QGB2_CITUN (14_3_3 domain-containing protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_224060 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.087e-17
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 0

Query:   58 QPALLEFCQVSSSCSVGSDLPYHAVANKSQLSSRSVGSDLPHTTIVSSPTTAAIILLR 115
            +PALL+F QVSSS  VGSDLP+HA A+KSQ SSRSVGSDLPH  I  SPT   I+LLR
Sbjct:   76 KPALLKFSQVSSSRCVGSDLPHHAAASKSQHSSRSVGSDLPHAAIALSPTAVVIVLLR 133

The following BLAST results are available for this feature:

BLAST of CMJ_chr3_010540.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr3_010540.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr3_010540.1 vs. ExPASy TrEMBL

BLAST of CMJ_chr3_010540.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A2H5QGB2\|A0A2H5QGB2_CITUN	3.087e-17	70.69	14_3_3 domain-containing protein (Fragment) OS=Cit...	[more]

BLAST of CMJ_chr3_010540.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_010540.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:27159867..27160602-
coding sequence from alignment at chr3:27159867..27160602-

mRNA sequence

>CMJ_chr3_010540.1_cmj_v1 ID=CMJ_chr3_010540.1_cmj_v1; Name=CMJ_chr3_010540.1; organism=Citrus maxima; type=mRNA; length=348bp
ATGCAATCATTATCAAACCCAAAGCTAGAAAATGATATTCTCACAACACT
TGAGCACAACACTGATCACAAAACGCACAGTTTTGTGCTCAATATAAAAT
CTGATTTTTGGGAGAAAAATTTCGACTCACGCGCATGCAACAAACTCTAT
CACGCGTCTCGCTTTGTTCAACAGCCAGCGTTGCTCGAATTTTGCCAAGT
TTCCTCATCGTGCAGTGTCGGCTCCGATCTCCCTTACCACGCAGTAGCCA
ACAAGTCTCAGCTCTCCTCCCGCAGTGTCGGCTCTGATCTCCCTCACACA
ACAATAGTCTCGTCTCCGACAACTGCCGCAATCATCTTGTTAAGGTAA

protein sequence of CMJ_chr3_010540.1_cmj_v1

>CMJ_chr3_010540.1_cmj_v1 ID=CMJ_chr3_010540.1_cmj_v1; Name=CMJ_chr3_010540.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=116bp
MQSLSNPKLENDILTTLEHNTDHKTHSFVLNIKSDFWEKNFDSRACNKLY
HASRFVQQPALLEFCQVSSSCSVGSDLPYHAVANKSQLSSRSVGSDLPHT
TIVSSPTTAAIILLR*

mRNA from alignment at chr3:27159867..27160602-

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=736bp; location=Sequence derived from: chr3:27159867..27160602- (Citrus maxima
ATGCAATCATTATCAAACCCAAAGCTAGAAAATGATATTCTCACAACACT
TGAGCACAACACTGATCACAAAACGCACAGTTTTGTGCTCAATATAAAAT
CTGATTTTTGGGAGAAAAATTTCGACTCACGCGCATGCAACAAACTCTAT
CACGCGTCTCGCTTTGTTCAACAGCCAGCGTTGCTCGAATTTTGCCAAGT
TTCCTCATCGTGCAGTGTCGGCTCCGATCTCCCTTACCACGCAGTAGCCA
ACAAGTCTCAGCTCTCCTCCCGCAGTGTCGGCTCTGATCTCCCTCACACA
ACAATAGTCTCGTCTCCGACAACTGCCGCAATCATCTTGTTAAGGTAACT
CGTGTAGGAATTGTGCTATTTATGAGTTGACTGTTAGGGAGTTGAAGCTC
ATTGTCCTGTAATTGCAACCTTTGTGATGTTGAGGAAAGTTAATCCCGTA
ATTGCAGCCTCCATGTTTATTTGTTTCAAAGAAAGAGTTGCTTTATATTA
CTCAAATCTTTATGCACTGTTAATAAATTATATTGCCCATTGTTTGAATA
GAAATAAAACGGCTACTCAGATTTAAGTTCCCTGGATTTGTAATTAACTT
CAATTAATCGTATGTGTTACTCAATGTGTGTTGAGCTTGTACTTGTTCTG
GGATTCCTTTTGTTTCTTTTTTGGTTTATAAATACCTTGTTGAGGATTGC
AAATAAGAGAAGCTAATATATTAAACCCAACGGGAT

Coding sequence (CDS) from alignment at chr3:27159867..27160602-

>CMJ_chr3_010540.1_cmj_v1 ID=CMJ_chr3_010540.1_cmj_v1; Name=CMJ_chr3_010540.1; organism=Citrus maxima; type=CDS; length=348bp; location=Sequence derived from: chr3:27159867..27160602- (Citrus maxima
ATGCAATCATTATCAAACCCAAAGCTAGAAAATGATATTCTCACAACACT
TGAGCACAACACTGATCACAAAACGCACAGTTTTGTGCTCAATATAAAAT
CTGATTTTTGGGAGAAAAATTTCGACTCACGCGCATGCAACAAACTCTAT
CACGCGTCTCGCTTTGTTCAACAGCCAGCGTTGCTCGAATTTTGCCAAGT
TTCCTCATCGTGCAGTGTCGGCTCCGATCTCCCTTACCACGCAGTAGCCA
ACAAGTCTCAGCTCTCCTCCCGCAGTGTCGGCTCTGATCTCCCTCACACA
ACAATAGTCTCGTCTCCGACAACTGCCGCAATCATCTTGTTAAGGTAA