CMJ_chr3_010690.3
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of CMJ_chr3_010690.3 vs. ExPASy TrEMBL
Match: A0A2H5MZK5|A0A2H5MZK5_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_275050 PE=4 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 5.546e-66 Identity = 111/139 (79.86%), Postives = 116/139 (83.45%), Query Frame = 0 Query: 11 RKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDSQVAGGKVAVQQNLALLQNQ-------VDPGKFNKFLVWRSEIGLCNSRAFQVRLFDSTHYLKAFGIGDVWVAVGGSSDVLPAVKCMSN 142 R L + DWKD W+PELAGRISMVNSPREVIGSVLKY ASYNSN+IDSQVAGGK+AVQQNLALL NQ VDPGKF+K LVWRSEIGLCNS AFQVRLFDSTHYLKAF IGDVWVAVG SDVLPAVK MSN Sbjct: 148 RILSLNTVNDWKDPWQPELAGRISMVNSPREVIGSVLKYRVASYNSNDIDSQVAGGKIAVQQNLALLANQEDSRCNHVDPGKFDKVLVWRSEIGLCNSGAFQVRLFDSTHYLKAFAIGDVWVAVGWISDVLPAVKHMSN 286
BLAST of CMJ_chr3_010690.3 vs. ExPASy TrEMBL
Match: A0A067E9C7|A0A067E9C7_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g016927mg PE=4 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 1.498e-65 Identity = 108/142 (76.06%), Postives = 112/142 (78.87%), Query Frame = 0 Query: 1 MMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDSQVAGGKVAVQQNLALLQNQVDPGKFNKFLVWRSEIGLCNSRAFQVRLFDSTHYLKAFGIGDVWVAVGGSSDVLPAVKCMSN 142 M+IAYKKSKFRKH+LAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNID QVAGGK++VQQNLALL N Q RLFDSTHYLKAFGIGDVWVAVG SSDVLPAVK MSN Sbjct: 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLAN-------------------------QARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSN 117
BLAST of CMJ_chr3_010690.3 vs. ExPASy TrEMBL
Match: A0A2H5PM90|A0A2H5PM90_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_149460 PE=4 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 4.040e-65 Identity = 108/142 (76.06%), Postives = 113/142 (79.58%), Query Frame = 0 Query: 1 MMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDSQVAGGKVAVQQNLALLQNQVDPGKFNKFLVWRSEIGLCNSRAFQVRLFDSTHYLKAFGIGDVWVAVGGSSDVLPAVKCMSN 142 M+IAYKKSKFRKH+LAPIEDWKDLW+PELAGRISMVNSPREVIGSVLKYMGASYNSN+IDSQVAGGK+AVQQNLALL N QVRLFDSTHYL AFGIGDVWVAVG SSDVLPAVK MSN Sbjct: 1 MVIAYKKSKFRKHNLAPIEDWKDLWQPELAGRISMVNSPREVIGSVLKYMGASYNSNDIDSQVAGGKIAVQQNLALLAN-------------------------QVRLFDSTHYLIAFGIGDVWVAVGWSSDVLPAVKRMSN 117
BLAST of CMJ_chr3_010690.3 vs. ExPASy TrEMBL
Match: A0A067DXW9|A0A067DXW9_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g016927mg PE=4 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 1.305e-63 Identity = 108/142 (76.06%), Postives = 112/142 (78.87%), Query Frame = 0 Query: 1 MMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDSQVAGGKVAVQQNLALLQNQVDPGKFNKFLVWRSEIGLCNSRAFQVRLFDSTHYLKAFGIGDVWVAVGGSSDVLPAVKCMSN 142 M+IAYKKSKFRKH+LAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNID QVAGGK++VQQNLALL N Q RLFDSTHYLKAFGIGDVWVAVG SSDVLPAVK MSN Sbjct: 108 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLAN-------------------------QARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSN 224
BLAST of CMJ_chr3_010690.3 vs. ExPASy TrEMBL
Match: A0A2H5PM75|A0A2H5PM75_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_149330 PE=4 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 1.102e-62 Identity = 108/142 (76.06%), Postives = 114/142 (80.28%), Query Frame = 0 Query: 1 MMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDSQVAGGKVAVQQNLALLQNQVDPGKFNKFLVWRSEIGLCNSRAFQVRLFDSTHYLKAFGIGDVWVAVGGSSDVLPAVKCMSN 142 ++IAYKKSKFRKH+LAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDSQVAGGK++VQQNLALL N +VRLFDSTHYLKAFGIGDVWVAVG SSDVLPAVK MSN Sbjct: 250 VVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDSQVAGGKISVQQNLALLAN-------------------------RVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSN 366
BLAST of CMJ_chr3_010690.3 vs. ExPASy TrEMBL
Match: A0A2H5PM77|A0A2H5PM77_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_149330 PE=4 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 2.015e-62 Identity = 108/142 (76.06%), Postives = 114/142 (80.28%), Query Frame = 0 Query: 1 MMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDSQVAGGKVAVQQNLALLQNQVDPGKFNKFLVWRSEIGLCNSRAFQVRLFDSTHYLKAFGIGDVWVAVGGSSDVLPAVKCMSN 142 ++IAYKKSKFRKH+LAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDSQVAGGK++VQQNLALL N +VRLFDSTHYLKAFGIGDVWVAVG SSDVLPAVK MSN Sbjct: 263 VVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDSQVAGGKISVQQNLALLAN-------------------------RVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSN 379
BLAST of CMJ_chr3_010690.3 vs. ExPASy TrEMBL
Match: A0A2H5QM65|A0A2H5QM65_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_243150 PE=4 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 9.139e-62 Identity = 105/142 (73.94%), Postives = 108/142 (76.06%), Query Frame = 0 Query: 1 MMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDSQVAGGKVAVQQNLALLQNQVDPGKFNKFLVWRSEIGLCNSRAFQVRLFDSTHYLKAFGIGDVWVAVGGSSDVLPAVKCMSN 142 M I YKKSKF+ H+LAPIEDWKD W PELAGRISMVNSPREVIGSVLKYMGASYNSNNID QVAGGK+AVQQNLALL N QVRLFDSTHYLKAFGIGDVWVAVG SSDVLPAVK MSN Sbjct: 21 MAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKIAVQQNLALLAN-------------------------QVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSN 137
BLAST of CMJ_chr3_010690.3 vs. ExPASy TrEMBL
Match: A0A2H5QM52|A0A2H5QM52_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_243150 PE=4 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 3.199e-59 Identity = 105/142 (73.94%), Postives = 108/142 (76.06%), Query Frame = 0 Query: 1 MMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDSQVAGGKVAVQQNLALLQNQVDPGKFNKFLVWRSEIGLCNSRAFQVRLFDSTHYLKAFGIGDVWVAVGGSSDVLPAVKCMSN 142 M I YKKSKF+ H+LAPIEDWKD W PELAGRISMVNSPREVIGSVLKYMGASYNSNNID QVAGGK+AVQQNLALL N QVRLFDSTHYLKAFGIGDVWVAVG SSDVLPAVK MSN Sbjct: 256 MAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKIAVQQNLALLAN-------------------------QVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSN 372
BLAST of CMJ_chr3_010690.3 vs. ExPASy TrEMBL
Match: A0A2H5Q748|A0A2H5Q748_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_202050 PE=4 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 3.440e-54 Identity = 109/187 (58.29%), Postives = 115/187 (61.50%), Query Frame = 0 Query: 1 MMIAYKKSKFRKHDLAPIE---------------------------------------------DWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDSQVAGGKVAVQQNLALLQNQVDPGKFNKFLVWRSEIGLCNSRAFQVRLFDSTHYLKAFGIGDVWVAVGGSSDVLPAVKCMSN 142 M+IAYKKSKFRKH+LAPIE DWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNID QVAGGK++VQQNLALL NQ + S + VRLFDSTHYLKAFGI DVWVAVG SSDVLPAVK MSN Sbjct: 263 MVIAYKKSKFRKHNLAPIETAFLFNIFDDNIFRSISLTGSYEGGGIFRFLRPHSRHHPGSKEGADWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQ-----------------MLISLSIPVRLFDSTHYLKAFGIRDVWVAVGWSSDVLPAVKRMSN 432
BLAST of CMJ_chr3_010690.3 vs. ExPASy TrEMBL
Match: A0A5C7HC95|A0A5C7HC95_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_019840 PE=4 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 9.191e-53 Identity = 96/142 (67.61%), Postives = 108/142 (76.06%), Query Frame = 0 Query: 1 MMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDSQVAGGKVAVQQNLALLQNQVDPGKFNKFLVWRSEIGLCNSRAFQVRLFDSTHYLKAFGIGDVWVAVGGSSDVLPAVKCMSN 142 M+IAYKKSKF+ + L PIEDW DLWRPELAGRISMVNSPREVIG+VLKYMGASYN+ N++ QVAGG+ AVQQNLALL GK QVRLFDST++LKAFG+GDVWVAVG SS+VLPAVK MSN Sbjct: 237 MVIAYKKSKFQTYKLDPIEDWTDLWRPELAGRISMVNSPREVIGAVLKYMGASYNTENMNLQVAGGRTAVQQNLALL------GK-------------------QVRLFDSTNFLKAFGVGDVWVAVGWSSEVLPAVKRMSN 353
BLAST of CMJ_chr3_010690.3 vs. Araport11
Match: AT1G31410.1 (| putrescine-binding periplasmic protein-like protein | Chr1:11247094-11249345 REVERSE LENGTH=524 | 201606) HSP 1 Score: 169.474 bits (428), Expect = 9.335e-51 Identity = 84/142 (59.15%), Postives = 101/142 (71.13%), Query Frame = 0 Query: 1 MMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDSQVAGGKVAVQQNLALLQNQVDPGKFNKFLVWRSEIGLCNSRAFQVRLFDSTHYLKAFGIGDVWVAVGGSSDVLPAVKCMSN 142 M+IAYKKSKF+ + LAPIEDW DLWRPELAGRI+MVNSPREV+G+VLKYM ASYN+ ++DSQV GG++AV++NLA L Q+RLFDS +YLKAF +GDVWV VG SSDV+P K MSN Sbjct: 244 MVIAYKKSKFQNYKLAPIEDWADLWRPELAGRIAMVNSPREVVGAVLKYMRASYNTTDLDSQVPGGRLAVEKNLASLMK-------------------------QIRLFDSNNYLKAFNVGDVWVTVGWSSDVIPVAKRMSN 360 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_010690.3 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_010690.3 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_010690.3 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_010690.3_cmj_v1 ID=CMJ_chr3_010690.3_cmj_v1; Name=CMJ_chr3_010690.3; organism=Citrus maxima; type=mRNA; length=429bpback to top protein sequence of CMJ_chr3_010690.3_cmj_v1 >CMJ_chr3_010690.3_cmj_v1 ID=CMJ_chr3_010690.3_cmj_v1; Name=CMJ_chr3_010690.3_cmj_v1; organism=Citrus maxima; type=polypeptide; length=143bpback to top mRNA from alignment at chr3:27355785..27360310- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=4526bp; location=Sequence derived from: chr3:27355785..27360310- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:27355785..27360310- >CMJ_chr3_010690.3_cmj_v1 ID=CMJ_chr3_010690.3_cmj_v1; Name=CMJ_chr3_010690.3; organism=Citrus maxima; type=CDS; length=429bp; location=Sequence derived from: chr3:27355785..27360310- (Citrus maximaback to top |