CMJ_chr3_010700.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr3_010700.1
Unique Name	CMJ_chr3_010700.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	240

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cmjdvaR115	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
cmjdvbR109	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
cmjfhsR203	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmjfhsR213	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmjzkR214	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
cmcmjL209	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmjcsnR264	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjcsnR272	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjminR0313	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjminR0371	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjeglR0427	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR0474	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR0511	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR0558	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjcsgR151	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
cmjcmxR190	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmxR215	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmmR173	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
caacmjL350	Citrus australasica cv. AZM genome v1.0	Citrus australasica
cmjmpkR152	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
cmjmpjR164	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
cigcmjL252	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cmjlssR234	Luvunga scandens cv. SYT genome v1.0	Luvunga scandens
cmjcsjR269	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR292	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjneiR156	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cmjcraR257	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR272	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cchcmjL108	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
cgucmjL174	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL537	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cmjcumR226	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
cmjcumR268	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
cmjcrcR168	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcstR159	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis

Orthologs


Gene/Transcript	Assembly	Species
Csi03G022060.1	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
drCitSine.Jinhong.1.0.HA3g23340.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
huyou00010097-RA	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
EVM_prediction_chr2.2_youzi.1039	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
Egl267370.1	Citrus australasica cv. AZM genome v1.0	Citrus australasica
drCitSine.Jinhong.1.0.HB3g23260.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
SYT119120.1	Luvunga scandens cv. SYT genome v1.0	Luvunga scandens
gene-KPL70_014824-mRNA1	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
gene-KPL71_015122-mRNA1	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
Cms002050.1	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
eg_v1.0.alternate_g21161.t1	Citrus glauca CRC3463 genome v1	Citrus glauca
CP3g002376.t1	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
Me_08941.1	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
EVM_prediction_HIC_ASM_2.1991	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
hap1-g8001.t1	Citrus glauca genome v1.0 (UQ)	Citrus glauca

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
XGF167150.1	Citrus maxima cv. XGF genome v1.0	Citrus maxima
Cg3g009480.1	Citrus maxima (C. grandis) genome v1.0	Citrus maxima

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr3_010700	CMJ_chr3_010700_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_010700.1.exon2	CMJ_chr3_010700.1.exon2_cmj_v1	Citrus maxima	exon
CMJ_chr3_010700.1.exon1	CMJ_chr3_010700.1.exon1_cmj_v1	Citrus maxima	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_010700.1.cds.2	CMJ_chr3_010700.1.cds.2_cmj_v1	Citrus maxima	CDS
CMJ_chr3_010700.1.cds.1	CMJ_chr3_010700.1.cds.1_cmj_v1	Citrus maxima	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_010700.1_cmj_v1	CMJ_chr3_010700.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr3_010700.1_cmj_v1	CMJ_chr3_010700.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy TrEMBL
Match: A0A1U8AGU1|A0A1U8AGU1_NELNU (Histone deacetylase OS=Nelumbo nucifera OX=4432 GN=LOC104603858 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.501e-16
Identity = 46/95 (48.42%), Postives = 58/95 (61.05%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRMHQVSCFKRPLDTE---------------FQEENHEDDGNGRWDSD---DVDADSGP 77
            M+V++PGAVVLQCGADSL GDRLGCFNLSI+GHAECVR   +  F  PL                  ++ +  +DDG+ RWD D   +VD +  P
Sbjct:  257 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRY--MRSFNVPLLLLGGGGYTIRNVARCWCYEADEDQDDGDERWDPDSDMEVDDERKP 349

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy TrEMBL
Match: A0A2I4GGS5|A0A2I4GGS5_JUGRE (Histone deacetylase OS=Juglans regia OX=51240 GN=LOC109007743 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.747e-16
Identity = 45/90 (50.00%), Postives = 58/90 (64.44%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRMHQVSCFKRPLDTE---------------FQEENHEDDGNGRWDSD-DVDAD 74
            M+V++PGAVVLQCGADSL GDRLGCFNLSIKGHA+CVR   +  F  PL                  ++ +  +DDG+ RWD D D+++D
Sbjct:  257 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHADCVRF--MRSFNVPLLLLGGGGYTIRNVARCWCYEVDEDQDDGDKRWDPDSDMESD 344

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy TrEMBL
Match: A0A7N2KTG9|A0A7N2KTG9_QUELO (Histone deacetylase OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.059e-16
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRMHQVSCFKRPL 49
            M+VY+PGAVVLQCGADSL GDRLGCFNLSIKGHAECVR   +  F  PL
Sbjct:  257 MEVYRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRF--IRSFNVPL 303

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy TrEMBL
Match: I3T758|I3T758_LOTJA (Histone deacetylase OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.852e-16
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRMHQVSCFKRPL 49
            M+V+KPGAVVLQCGADSL GDRLGCFNLSIKGHAECVR   +  F  PL
Sbjct:   56 MEVFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRY--MRSFNVPL 102

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy TrEMBL
Match: A0A2I0LEV8|A0A2I0LEV8_PUNGR (Histone deacetylase (Fragment) OS=Punica granatum OX=22663 GN=CRG98_000813 PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.165e-15
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRMHQVSCFKRPL 49
            +++Y+PGA+VLQCGADSL GDRLGCFNLSI GHAECVR+  V  F  PL
Sbjct:   20 VEIYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRI--VKKFNLPL 66

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy TrEMBL
Match: A0A6N2LLS9|A0A6N2LLS9_SALVM (Histone deacetylase OS=Salix viminalis OX=40686 GN=SVIM_LOCUS206966 PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.427e-15
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRMHQVSCFKRPL 49
            M+VY+PGAVVLQCGADSL GDRLGCFNLS+KGHA+C+R   +  F  PL
Sbjct:   10 MEVYQPGAVVLQCGADSLSGDRLGCFNLSVKGHADCLRF--IRSFNVPL 56

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy TrEMBL
Match: A0A7J7M472|A0A7J7M472_9MAGN (Histone deacetylase OS=Kingdonia uniflora OX=39325 GN=GIB67_017389 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.716e-15
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVR 38
            M+V++PGAVVLQCGADSL GDRLGCFNLSIKGHAECVR
Sbjct:   11 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVR 48

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy TrEMBL
Match: A0A061E1X0|A0A061E1X0_THECC (Histone deacetylase OS=Theobroma cacao OX=3641 GN=TCM_007621 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.893e-15
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVR 38
            M+V+KPGAVVLQCGADSL GDRLGCFNLSIKGHAECV+
Sbjct:  257 MEVFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVK 294

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy TrEMBL
Match: D8QP89|D8QP89_SELML (Histone deacetylase OS=Selaginella moellendorffii OX=88036 GN=SELMODRAFT_74186 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.920e-15
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRMHQVSCFKRPL 49
            M+VY+PGA+VLQCGADSL GDRLGCFNLS+KGHAECVR   V  F  PL
Sbjct:  259 MEVYQPGAIVLQCGADSLSGDRLGCFNLSVKGHAECVRF--VRSFNVPL 305

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy TrEMBL
Match: A0A7I4F2T9|A0A7I4F2T9_PHYPA (Histone deacetylase OS=Physcomitrium patens OX=3218 PE=4 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.041e-15
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRMHQVSCFKRPL 49
            M+V++PGAVVLQCGADSL GDRLGCFNLS+KGHAECVR   +  F  PL
Sbjct:   56 MEVFQPGAVVLQCGADSLSGDRLGCFNLSVKGHAECVRF--MRSFNVPL 102

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy Swiss-Prot
Match: HDA19_MAIZE (Probable histone deacetylase 19 OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.255e-17
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVR 38
            M+V++PGAVVLQCGADSL GDRLGCFNLSIKGHAECVR
Sbjct:  262 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVR 299

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy Swiss-Prot
Match: HDAC1_ORYSJ (Histone deacetylase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=HDAC1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.857e-17
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRM 39
            M+V++PGAVVLQCGADSL GDRLGCFNLSI+GHAECVR 
Sbjct:  261 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRF 299

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy Swiss-Prot
Match: HDA19_ARATH (Histone deacetylase 19 OS=Arabidopsis thaliana OX=3702 GN=HDA19 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.878e-16
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRM 39
            M++++PGAVVLQCGADSL GDRLGCFNLSIKGHAECV+ 
Sbjct:  257 MEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKF 295

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy Swiss-Prot
Match: HDAC3_ORYSJ (Histone deacetylase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=HDAC3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.251e-15
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRM 39
            M++Y+PGAVVLQCGADSL GDRLGCFNLS KGHAECV+ 
Sbjct:  266 MEMYRPGAVVLQCGADSLSGDRLGCFNLSGKGHAECVKF 304

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy Swiss-Prot
Match: HDAC2_ORYSJ (Histone deacetylase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=HDAC2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.263e-15
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRM 39
            M++Y+PGAVVLQCGADSL GDRLGCFNLS KGHAECV+ 
Sbjct:  266 MEMYRPGAVVLQCGADSLSGDRLGCFNLSGKGHAECVKF 304

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy Swiss-Prot
Match: HDA6_ARATH (Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.895e-15
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRMHQVSCFKRPL 49
            M+VY+P AVVLQCGADSL GDRLGCFNLS+KGHA+C+R   +  +  PL
Sbjct:  261 MEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRF--LRSYNVPL 307

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy Swiss-Prot
Match: HDA9_ARATH (Histone deacetylase 9 OS=Arabidopsis thaliana OX=3702 GN=HDA9 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.780e-15
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRMHQVSCFKRPL 49
            +++Y+PGA+VLQCGADSL  DRLGCFNLSI GHAECV+   V  F  PL
Sbjct:  246 VEIYQPGAIVLQCGADSLARDRLGCFNLSIDGHAECVKF--VKKFNLPL 292

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy Swiss-Prot
Match: HDA1B_XENLA (Probable histone deacetylase 1-B OS=Xenopus laevis OX=8355 GN=hdac1-b PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.922e-15
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRMHQVSCFKRPL 49
            M++++P AVVLQCGADSL GDRLGCFNL+IKGHA+CV    +  F  P+
Sbjct:  249 MEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEF--IKTFNLPM 295

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy Swiss-Prot
Match: HDAC1_PONAB (Histone deacetylase 1 OS=Pongo abelii OX=9601 GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.162e-15
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRMHQVSCFKRPL 49
            M++++P AVVLQCG+DSL GDRLGCFNL+IKGHA+CV    V  F  P+
Sbjct:  249 MEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEF--VKSFNLPM 295

[Close]

BLAST of CMJ_chr3_010700.1 vs. ExPASy Swiss-Prot
Match: HDAC1_HUMAN (Histone deacetylase 1 OS=Homo sapiens OX=9606 GN=HDAC1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.162e-15
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRMHQVSCFKRPL 49
            M++++P AVVLQCG+DSL GDRLGCFNL+IKGHA+CV    V  F  P+
Sbjct:  249 MEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEF--VKSFNLPM 295

[Close]

BLAST of CMJ_chr3_010700.1 vs. Araport11
Match: AT4G38130.1 (| histone deacetylase 1 | Chr4:17896493-17899057 REVERSE LENGTH=501 | 201606)

HSP 1 Score: 75.0998 bits (183), Expect = 1.922e-17
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRM 39
            M++++PGAVVLQCGADSL GDRLGCFNLSIKGHAECV+ 
Sbjct:  257 MEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKF 295

[Close]

BLAST of CMJ_chr3_010700.1 vs. Araport11
Match: AT4G38130.2 (| histone deacetylase 1 | Chr4:17896663-17899057 REVERSE LENGTH=469 | 201606)

HSP 1 Score: 75.0998 bits (183), Expect = 2.143e-17
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRM 39
            M++++PGAVVLQCGADSL GDRLGCFNLSIKGHAECV+ 
Sbjct:  257 MEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKF 295

[Close]

BLAST of CMJ_chr3_010700.1 vs. Araport11
Match: AT5G63110.1 (| histone deacetylase 6 | Chr5:25315834-25318227 REVERSE LENGTH=471 | 201606)

HSP 1 Score: 72.4034 bits (176), Expect = 1.939e-16
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRMHQVSCFKRPL 49
            M+VY+P AVVLQCGADSL GDRLGCFNLS+KGHA+C+R   +  +  PL
Sbjct:  261 MEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRF--LRSYNVPL 307

[Close]

BLAST of CMJ_chr3_010700.1 vs. Araport11
Match: AT3G44680.1 (| histone deacetylase 9 | Chr3:16226769-16229752 REVERSE LENGTH=426 | 201606)

HSP 1 Score: 72.0182 bits (175), Expect = 2.844e-16
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRMHQVSCFKRPL 49
            +++Y+PGA+VLQCGADSL  DRLGCFNLSI GHAECV+   V  F  PL
Sbjct:  246 VEIYQPGAIVLQCGADSLARDRLGCFNLSIDGHAECVKF--VKKFNLPL 292

[Close]

BLAST of CMJ_chr3_010700.1 vs. Araport11
Match: AT5G35600.1 (| histone deacetylase7 | Chr5:13770121-13771712 REVERSE LENGTH=409 | 201606)

HSP 1 Score: 62.3882 bits (150), Expect = 5.993e-13
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 0

Query:    1 MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRMHQVSCFKRPL 49
            M++Y+P  +VLQCGADSL GD  G FNLSIKGH +C  +  V  F  PL
Sbjct:  252 MEIYEPEVIVLQCGADSLAGDPFGTFNLSIKGHGDC--LQYVRSFNVPL 298

The following BLAST results are available for this feature:

BLAST of CMJ_chr3_010700.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr3_010700.1 vs. ExPASy Swiss-Prot
BLAST of CMJ_chr3_010700.1 vs. Araport11

BLAST of CMJ_chr3_010700.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
A0A1U8AGU1\|A0A1U8AGU1_NELNU	6.501e-16	48.42	Histone deacetylase OS=Nelumbo nucifera OX=4432 GN...	[more]
A0A2I4GGS5\|A0A2I4GGS5_JUGRE	6.747e-16	50.00	Histone deacetylase OS=Juglans regia OX=51240 GN=L...	[more]
A0A7N2KTG9\|A0A7N2KTG9_QUELO	8.059e-16	77.55	Histone deacetylase OS=Quercus lobata OX=97700 PE=...	[more]
I3T758\|I3T758_LOTJA	9.852e-16	77.55	Histone deacetylase OS=Lotus japonicus OX=34305 PE...	[more]
A0A2I0LEV8\|A0A2I0LEV8_PUNGR	1.165e-15	71.43	Histone deacetylase (Fragment) OS=Punica granatum ...	[more]
A0A6N2LLS9\|A0A6N2LLS9_SALVM	1.427e-15	71.43	Histone deacetylase OS=Salix viminalis OX=40686 GN...	[more]
A0A7J7M472\|A0A7J7M472_9MAGN	1.716e-15	89.47	Histone deacetylase OS=Kingdonia uniflora OX=39325...	[more]
A0A061E1X0\|A0A061E1X0_THECC	1.893e-15	89.47	Histone deacetylase OS=Theobroma cacao OX=3641 GN=...	[more]
D8QP89\|D8QP89_SELML	1.920e-15	75.51	Histone deacetylase OS=Selaginella moellendorffii ...	[more]
A0A7I4F2T9\|A0A7I4F2T9_PHYPA	2.041e-15	73.47	Histone deacetylase OS=Physcomitrium patens OX=321...	[more]

BLAST of CMJ_chr3_010700.1 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
HDA19_MAIZE	3.255e-17	89.47	Probable histone deacetylase 19 OS=Zea mays OX=457...	[more]
HDAC1_ORYSJ	5.857e-17	84.62	Histone deacetylase 1 OS=Oryza sativa subsp. japon...	[more]
HDA19_ARATH	1.878e-16	82.05	Histone deacetylase 19 OS=Arabidopsis thaliana OX=...	[more]
HDAC3_ORYSJ	1.251e-15	82.05	Histone deacetylase 3 OS=Oryza sativa subsp. japon...	[more]
HDAC2_ORYSJ	1.263e-15	82.05	Histone deacetylase 2 OS=Oryza sativa subsp. japon...	[more]
HDA6_ARATH	1.895e-15	67.35	Histone deacetylase 6 OS=Arabidopsis thaliana OX=3...	[more]
HDA9_ARATH	2.780e-15	67.35	Histone deacetylase 9 OS=Arabidopsis thaliana OX=3...	[more]
HDA1B_XENLA	3.922e-15	63.27	Probable histone deacetylase 1-B OS=Xenopus laevis...	[more]
HDAC1_PONAB	4.162e-15	63.27	Histone deacetylase 1 OS=Pongo abelii OX=9601 GN=H...	[more]
HDAC1_HUMAN	4.162e-15	63.27	Histone deacetylase 1 OS=Homo sapiens OX=9606 GN=H...	[more]

BLAST of CMJ_chr3_010700.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
AT4G38130.1	1.922e-17	82.05	\| histone deacetylase 1 \| Chr4:17896493-17899057 R...	[more]
AT4G38130.2	2.143e-17	82.05	\| histone deacetylase 1 \| Chr4:17896663-17899057 R...	[more]
AT5G63110.1	1.939e-16	67.35	\| histone deacetylase 6 \| Chr5:25315834-25318227 R...	[more]
AT3G44680.1	2.844e-16	67.35	\| histone deacetylase 9 \| Chr3:16226769-16229752 R...	[more]
AT5G35600.1	5.993e-13	57.14	\| histone deacetylase7 \| Chr5:13770121-13771712 RE...	[more]

InterPro

Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023801	Histone deacetylase domain	PFAM	PF00850	Hist_deacetyl	coord: 2..39 e-value: 3.7E-7 score: 29.8
IPR037138	Histone deacetylase domain superfamily	GENE3D	3.40.800.20	Histone deacetylase domain	coord: 1..64 e-value: 6.7E-11 score: 43.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..72
IPR023696	Ureohydrolase domain superfamily	SUPERFAMILY	52768	Arginase/deacetylase	coord: 2..39

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:27516101..27521073-
coding sequence from alignment at chr3:27516101..27521073-

mRNA sequence

>CMJ_chr3_010700.1_cmj_v1 ID=CMJ_chr3_010700.1_cmj_v1; Name=CMJ_chr3_010700.1; organism=Citrus maxima; type=mRNA; length=240bp
ATGCAAGTGTACAAGCCTGGTGCCGTTGTGTTACAATGCGGTGCTGATTC
TTTGGGTGGAGATAGACTAGGTTGCTTTAATCTTTCAATTAAAGGCCATG
CTGAATGTGTAAGAATGCACCAAGTGTCCTGTTTCAAGAGACCACTTGAT
ACAGAGTTTCAAGAAGAGAATCATGAAGATGATGGAAATGGAAGATGGGA
TTCTGATGACGTGGATGCAGACTCTGGACCGGAGTGCTAA

protein sequence of CMJ_chr3_010700.1_cmj_v1

>CMJ_chr3_010700.1_cmj_v1 ID=CMJ_chr3_010700.1_cmj_v1; Name=CMJ_chr3_010700.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=80bp
MQVYKPGAVVLQCGADSLGGDRLGCFNLSIKGHAECVRMHQVSCFKRPLD
TEFQEENHEDDGNGRWDSDDVDADSGPEC*

mRNA from alignment at chr3:27516101..27521073-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=4973bp; location=Sequence derived from: chr3:27516101..27521073- (Citrus maxima
ATGCAAGTGTACAAGCCTGGTGCCGTTGTGTTACAATGCGGTGCTGATTC
TTTGGGTGGAGATAGACTAGGTTGCTTTAATCTTTCAATTAAAGGCCATG
CTGAATGTGTAAGGTACATGAGATCTTTCAATGTGCCGCTATTGATGTTG
GGTGGTGGTGGCTATACGATTCGGAATGTTGCACGGTGCTGGTGCTATTA
GACCGGTGTGGCGCTATTAAGATAATAGAATTAGTTAAGATGGTTTAGTT
AGTTAAGCTTAGTTAATTTGATTAAACAAGTTTGTTATGACTGCTGACTT
GGCAGCTGAGCTGGAGGAAGGTTGTTATGTTGTTAGTTCAAACTCAAGCA
ACATGTAGAAGATTCGAGATACTTGTATAAATACATTCTTGTAAACCGTT
CGAATTAATTCAATGATTCAGATTCATTTTCTCTTGTTATTTTCCTTCTG
TTTCTCTGTAACTTTCTTAGAAACCAAACAAATAGTTTACAATCTAACAT
GGTATCAGAGCCTCACTAAAAACAAAAATGGTGTCTCTAAGCTCAAATCC
AAACGCAGTAACCTCTGTTTCTTCATTTACTTTCACTTCTCCTATTAAGC
TTGATCAATCGAACTACACAATTTGGAAATCTCATATTCTCTCTTCAGTA
CGTGCAAATGGTCTTGAAGATCATCTTGATAGCTCCAAATCATGTCCAGA
TCAATTTCTTCAAAGTGAATATGAAAACTCTGAAGTTGAAATTCAAACAA
ATCCAGCGTTCACTACTTGGAAAAGGAAGGATCAAATGCTGCTGAGCTGG
ATGCTGTCTTCCATAAATCTCGAGATTCTCAGTCTTGTGGTAAACTCTAA
AACTTCACTTGAACTCTGGACTAGTCTTGAGCAACAATTTGGATTTGAAA
CTTTTGCTAAAAAGGTTCATCTCAAGATGATGCTTAATAATCTTAGAAAA
GGTTCAATGTCAATGACTGAATTCTTTGGAAAGCTGAAAACAATAACTGA
TGATTTAGCAATTGCTGGAAGCCCTGTTAGCTCTCTGGATTTTATTACAC
ATCTGATCTCTGGGCTAGGCCAACCATACTATCCAGTGGTTGTGTATATT
GAAGCAAATCTTGCAAAAATGACTGTTAATGAAGCTTACTCCATGCTTTT
GACTCATGAAGCTAGATTAGAAGCACATCAGTCAAGTGCTAGCAAGGAAA
CTAAATTGAACTATGCGGCCAATGTTGCTCAAACTGGAACCAATACTAAA
TTTGGAGGACAAAATAATGCTAACTGGATTAAGAATGTCAATAATAATAA
TGGTGGCAGAGGAGCTTTTGGTAGAGGCTTTCCACAAGGCCGAGGAAGAG
GAAATTGGAATGATGTTTGGAATAATAATGCACAATCTGGAAATTATCAA
GGCAGAGGTGGATATGGTGTTAACAATGCCAATAACTTTAGTGCTAATAA
TGGAAATTTTGGTGGCTTCACTAATGGAAAAGGTGCTTTAGATCCAAATG
GAGCTGCTGTAATCTATCAAATATGCTTTAAGCCAAAGCATACTGCAGCT
GAATGCATGAACAGGTTCAACAAAGAATTTGTGCCTTATTATAATCTATA
TTAAGGCTATAATTCATATCAGAATCTTGGACCAAGAGCTTTCTATCCAA
ATTCAGCACCAAGAGCTGCTTTCTTGGCAACTTCTGAAGGTGACATGGCT
GATCAAGGCTGGTATTTTGATAGTGGGGCAACACATCATCTCACCAACAA
TTTGCAGAACTTGAATCTTGGAAGGGAATATTCAGGTAATCAGTTACTGC
ATGTTGGTAATGGCCAAGGTTTGAATATTACACACATTGGATATACTTGT
CTTCCCACTTCCTGTGATTCCTTTATGCATTTACAAGATATCTTGTGTGT
GCCTCATCTCACTAAAAATCTCATAAGCATTTCCAAATTACTTGAAGATA
CCAATTTAATCATTGAGTTTGTTGCCAATATGTGTTTTATTAAGGACAAG
AAGAAGGGAGTGCATCTGGCTCAAGGGATTGGTAGAGGAGGACTGTATAA
GTTGCTGTCTAAGGATGACTTTTTCTCCAGTTCATGTGTCACCAATCATA
ATCCTAGTTCTATGCTTTCTGTTTTTAACCAGTCAGTTTGTAAATTTTCT
GGATTGTCTTTGAATAAAGATTGTACTCAAATAAGTAATCCTCAGAGTCA
TTTGAACACTGTTAACCCAGTGATGTTTGCTAATGTGTTACACCAAAGAT
TTGGTCATCCTATTAAACATGCATTGAAAAGCATATTATCTTCCCTTGCA
CTTCATTATCCTACATGTGTTCTTGATTTTTGTGATGCTTTTCTCTTCTC
AGACCCTATAATAAACATAAACTCAATTTTCATACACAAAAATGCCTAAT
GATTGGCTATAGTCCTATACACAAGGGATATAAATGCCCAGATTCCACTG
GTAAAACATACATTGCTAGACATGTTTAGTTCAATGAATCAGAATTTCCT
TATTCTGAACTCTTTCCTACAAAGACTGATTCACAAATATCCTTTGTCCA
ACCAAGTCAAGTTTCCTTTTCAAATATTCCAATTACAGAAGTCATTCAAA
ACAGCAACAATGCACAATCCTCTGTTATTCCCTCATCTCCAGATGCAGGA
CCTGATTCAAGTCATTCCCACACACCTTCAGCACATCCATCTCCAAGACA
TTCATCTCAAAATTCATTACCACACATCCAAGATCATCAGCCAGTACAAA
CATCTCCAGTTTAGAATATTCATCTCATGACTACCAGATCAAAAGCTGGT
GTGTTTAAGCCCAAGATATATTTAACAGTAGCTCAAGAAATTGAAACTTC
ATCTGTTAAAGCAGCTCTAGCAGACCCCAAATGGAAACAGGCTATGCAAG
AAGAATTTGATGCACTACAAAAGAATAAAACCTGGGTTCTTATTCCTCCA
GAAACAGCCGGGAAGATTGTTGGAAACAAATGGGTATTCAGAATTAAACA
TAACCCTGATGGCAGCATATCAAAATATAAAGTGAGATTAGTTGTAAAGG
GGTTTCATCAGACACAAGGTGTGGATTTTTTTGAAAATTTTAGTCCAATT
GTAAAGCCCTGCACAATCAGAATAATCTAGAGTCTTGCTGTCATGAATCA
CTGGAGAATTAGGCAGCTAGATGTCAATAATGCCTTCTTTAATGGCATTC
TTACAAAAGATGTTTTTATGCATCAACCTGAGGGTTTTGTTCATCCTCAG
TTTCCAACTCATGTCTGCAAACTTACCAAGGCACTTTATGGACTCAAACA
GGCACCAAGAGCCTGGTATGACAGGTTGAAAGCTTCCTTAATTCAATAGA
GTTTTGTGACATCCAAATCGGATACCTCATTGTTTATTCATCATGTGGTA
GAGGAAATTATTGTAGCACTAATCTATATAGATGATATCTTGATCACTGG
CTCAAATTCTCATTTGGTAGAGAAGGTTATACATCAGTTGGGTGCAAAGT
TTGCCTTGAAAGATCTTGGGGAATTCAATTACTTTCTTGGTCTTGAGGTA
ACTCCAACTGTTGATGGTTTGCACCTATCACAAACTAAGTACATTGGTGA
TCTGCTCAAGAAAGCCCAAATGGTGAACTGCAAGGGTTGTCCAACGCCAA
TGAGCTCAACAGAAAAGTTAGTCAAAGACAAGGGTGCAGTTTTTTAGAAT
CCCTCTTTATATAGAAGTCTGGTTGGCTCATTACAATATGTTACACTAAC
AAGGCCTGAAATTGCCTTTACAGTGAATAAACTCAGCCAATATCTTTCTA
ATCCATCAGTACTTAATTGGCAAGCTTGCAAAAGGGTGCTGAGGTATCTA
CAGTATACAATAGATTATGGTTTGCAATTTTACTCATCAGGATAACTTAA
TCTTATAGCTTTCTCAGATGCTGATTGGGGATCTGATCTGGATGATAGGA
AGTCAGTAGGGGGATATTATGTTTACTTAGGCAACAACTTGGTATTATGG
TCTTCTAAGAAACAACATATAGTATCTAAAAGCACAGTTGAATCCGATAC
AGAGCTTTGGCTTTAACAACAGCTGAGGTATTGTGGATCACTTATCTTTT
CAAAGAATTGAAATTGTCTTTGCTGCAGTCTCCAGTTCTCTACTGTGATA
ACAAAAGTGCAGAAGCCCTTGCTAACAATCCTAAGTATCATTCTAAAACT
AAACACATTGAACTTGATCTACATTTCATTCGAGAGCATGTATCTAGAAT
GGAACTACAGATTAATCATGTTCCAAGTTGTGATCAGGTAGCAGATATTC
TTACTAAACCATTATCATTTGATCAATTTCATTATCTACGGTCCAAGCTC
AATGTTCTTCCCAGATCTTGAGCTTGAGAGGGGCTGTTAAGATAATAGAA
TTAGTTAAGATGGTTTAGTTAGTTAAGCTTAGTTAATTTGATTAAGCAAG
TTTGTTATGATCACGACTTGGCTTGGCGGTGAAATGGAGGAAGGTTGTTA
TGCTGTTAGCTCAAACTCAAGCAGCATGTAGAAGATTCGAGATAGTTGTA
TAAATACATTCTTGTAAACCGTTCGAATTAATTCAATGATTCAGATTCAT
TTTCTCTTGTTATTTTCCTTCTGTTTCTCTATGTAACTTTCTTAGAAACC
AAACAAATAGTTTACAATTTTATAGGCGCTTGGGGTGGAGCTTCAAGACG
AGACGCCGACACATTAATATTTGCTATATTATGGTCCTGAGTATACACTT
CATGTGCCTCCAATCAGTAATATGAAGAACAAAATCAAGCATAGGCACTG
GGATGAAACAAGAGCTCATCTCCTCGGTAATTTATCAAGGTTGCAGAATG
CACCAAGTGTCCTGTTTCAAGAGACCACTTGATACAGAGTTTCAAGAAGA
GAATCATGAAGATGATGGAAATGGAAGATGGGATTCTGATGACGTGGATG
CAGACTCTGGACCGGAGTGCTAA

Coding sequence (CDS) from alignment at chr3:27516101..27521073-

>CMJ_chr3_010700.1_cmj_v1 ID=CMJ_chr3_010700.1_cmj_v1; Name=CMJ_chr3_010700.1; organism=Citrus maxima; type=CDS; length=240bp; location=Sequence derived from: chr3:27516101..27521073- (Citrus maxima
ATGCAAGTGTACAAGCCTGGTGCCGTTGTGTTACAATGCGGTGCTGATTC
TTTGGGTGGAGATAGACTAGGTTGCTTTAATCTTTCAATTAAAGGCCATG
CTGAATGTGTAAGAATGCACCAAGTGTCCTGTTTCAAGAGACCACTTGAT
ACAGAGTTTCAAGAAGAGAATCATGAAGATGATGGAAATGGAAGATGGGA
TTCTGATGACGTGGATGCAGACTCTGGACCGGAGTGCTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR023801	His_deacetylse_dom
IPR037138	His_deacetylse_dom_sf
IPR023696	Ureohydrolase_dom_sf