CMJ_chr3_010770.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_010770.1 vs. ExPASy TrEMBL
Match: A0A067D3P7|A0A067D3P7_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g040923mg PE=4 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 2.107e-25 Identity = 53/91 (58.24%), Postives = 60/91 (65.93%), Query Frame = 0 Query: 1 MDDSVEMPPYDERPKKGVDIRSSKQ-----VNFAVDMITIGLLSSRVSLG--------MLVEYLDHSLGQTRLAFAEAPNEALPHSCRPNF 78 MDDS+EMPPY+E PKKGVDIRSSK +N+ + +S+ VEYLDHSLGQTRLAFAEAPNEAL HSCRPNF Sbjct: 1 MDDSIEMPPYNEMPKKGVDIRSSKVCELGVLNYKAKRVFYPFEASKFRRRYDYYWAPIFKVEYLDHSLGQTRLAFAEAPNEALSHSCRPNF 91
BLAST of CMJ_chr3_010770.1 vs. ExPASy TrEMBL
Match: V4T3W8|V4T3W8_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002048mg PE=4 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.885e-22 Identity = 53/103 (51.46%), Postives = 63/103 (61.17%), Query Frame = 0 Query: 1 MDDSVEMPPYDERPKKGVDIRSSKQ-----VNFAVDMITIGLLSSRVSLG--------MLVEYLDHSLGQTRLAFAEAPNEALPHSCRPNFGAAWLTKDKFQV 90 + S+ +P + VDIRSSK +N+ + +S+ VEYLDHSLGQTRLAFAEAPNEALPHSCRPNFGAAWLTKDKF+V Sbjct: 55 VSSSIFVPSQCKIVSSSVDIRSSKVCELGVLNYKAKRVFYPFEASKFRCRYDYYWASIFKVEYLDHSLGQTRLAFAEAPNEALPHSCRPNFGAAWLTKDKFKV 157
BLAST of CMJ_chr3_010770.1 vs. ExPASy TrEMBL
Match: A0A2H5PMA1|A0A2H5PMA1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_149510 PE=4 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.916e-22 Identity = 53/103 (51.46%), Postives = 63/103 (61.17%), Query Frame = 0 Query: 1 MDDSVEMPPYDERPKKGVDIRSSKQ-----VNFAVDMITIGLLSSRVSLG--------MLVEYLDHSLGQTRLAFAEAPNEALPHSCRPNFGAAWLTKDKFQV 90 + S+ +P + VDIRSSK +N+ + +S+ VEYLDHSLGQTRLAFAEAPNEALPHSCRPNFGAAWLTKDKF+V Sbjct: 55 VSSSIFVPSQCKIVSSSVDIRSSKVCELGVLNYKAKRVFYPFEASKFRCRYDYYWASIFKVEYLDHSLGQTRLAFAEAPNEALPHSCRPNFGAAWLTKDKFKV 157
BLAST of CMJ_chr3_010770.1 vs. ExPASy TrEMBL
Match: A0A5D2VQL7|A0A5D2VQL7_GOSMU (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D03G198700v1 PE=4 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 3.129e-20 Identity = 50/94 (53.19%), Postives = 56/94 (59.57%), Query Frame = 0 Query: 11 DERPKKGVDIRSSKQ-----VNFAVDMITIGLLSSRVSLG--------MLVEYLDHSLGQTRLAFAEAPNEALPHSCRPNFGAAWLTKDKFQVG 91 E P GVDIRSSK +N+ + S+ VEY DHSLGQT+LAF EAPNEALP SCRPNFGAAWLTKDKF+V Sbjct: 4 QELPDNGVDIRSSKVCELGLLNYKAKHVFYPFERSKFRCRYDYYWTSVFKVEYRDHSLGQTQLAFTEAPNEALPLSCRPNFGAAWLTKDKFKVN 97
BLAST of CMJ_chr3_010770.1 vs. ExPASy TrEMBL
Match: A0A0D2QN53|A0A0D2QN53_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G187200 PE=4 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 3.129e-20 Identity = 50/94 (53.19%), Postives = 56/94 (59.57%), Query Frame = 0 Query: 11 DERPKKGVDIRSSKQ-----VNFAVDMITIGLLSSRVSLG--------MLVEYLDHSLGQTRLAFAEAPNEALPHSCRPNFGAAWLTKDKFQVG 91 E P GVDIRSSK +N+ + S+ VEY DHSLGQT+LAF EAPNEALP SCRPNFGAAWLTKDKF+V Sbjct: 4 QELPDNGVDIRSSKVCELGLLNYKAKHVFYPFERSKFRCRYDYYWTSVFKVEYRDHSLGQTQLAFTEAPNEALPLSCRPNFGAAWLTKDKFKVN 97
BLAST of CMJ_chr3_010770.1 vs. ExPASy TrEMBL
Match: A0A5D2LQW2|A0A5D2LQW2_GOSTO (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D03G215100v1 PE=4 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 3.129e-20 Identity = 50/94 (53.19%), Postives = 56/94 (59.57%), Query Frame = 0 Query: 11 DERPKKGVDIRSSKQ-----VNFAVDMITIGLLSSRVSLG--------MLVEYLDHSLGQTRLAFAEAPNEALPHSCRPNFGAAWLTKDKFQVG 91 E P GVDIRSSK +N+ + S+ VEY DHSLGQT+LAF EAPNEALP SCRPNFGAAWLTKDKF+V Sbjct: 4 QELPDNGVDIRSSKVCELGLLNYKAKHVFYPFERSKFRCRYDYYWTSVFKVEYRDHSLGQTQLAFTEAPNEALPLSCRPNFGAAWLTKDKFKVN 97
BLAST of CMJ_chr3_010770.1 vs. ExPASy TrEMBL
Match: A0A5D2VQB6|A0A5D2VQB6_GOSMU (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D03G198700v1 PE=4 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.254e-20 Identity = 50/94 (53.19%), Postives = 56/94 (59.57%), Query Frame = 0 Query: 11 DERPKKGVDIRSSKQ-----VNFAVDMITIGLLSSRVSLG--------MLVEYLDHSLGQTRLAFAEAPNEALPHSCRPNFGAAWLTKDKFQVG 91 E P GVDIRSSK +N+ + S+ VEY DHSLGQT+LAF EAPNEALP SCRPNFGAAWLTKDKF+V Sbjct: 4 QELPDNGVDIRSSKVCELGLLNYKAKHVFYPFERSKFRCRYDYYWTSVFKVEYRDHSLGQTQLAFTEAPNEALPLSCRPNFGAAWLTKDKFKVN 97
BLAST of CMJ_chr3_010770.1 vs. ExPASy TrEMBL
Match: A0A1U8MKG5|A0A1U8MKG5_GOSHI (uncharacterized protein LOC107938591 isoform X3 OS=Gossypium hirsutum OX=3635 GN=LOC107938591 PE=4 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.254e-20 Identity = 50/94 (53.19%), Postives = 56/94 (59.57%), Query Frame = 0 Query: 11 DERPKKGVDIRSSKQ-----VNFAVDMITIGLLSSRVSLG--------MLVEYLDHSLGQTRLAFAEAPNEALPHSCRPNFGAAWLTKDKFQVG 91 E P GVDIRSSK +N+ + S+ VEY DHSLGQT+LAF EAPNEALP SCRPNFGAAWLTKDKF+V Sbjct: 4 QELPDNGVDIRSSKVCELGLLNYKAKHVFYPFERSKFRCRYDYYWTSVFKVEYRDHSLGQTQLAFTEAPNEALPLSCRPNFGAAWLTKDKFKVN 97
BLAST of CMJ_chr3_010770.1 vs. ExPASy TrEMBL
Match: A0A5D2LQJ0|A0A5D2LQJ0_GOSTO (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D03G215100v1 PE=4 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.254e-20 Identity = 50/94 (53.19%), Postives = 56/94 (59.57%), Query Frame = 0 Query: 11 DERPKKGVDIRSSKQ-----VNFAVDMITIGLLSSRVSLG--------MLVEYLDHSLGQTRLAFAEAPNEALPHSCRPNFGAAWLTKDKFQVG 91 E P GVDIRSSK +N+ + S+ VEY DHSLGQT+LAF EAPNEALP SCRPNFGAAWLTKDKF+V Sbjct: 4 QELPDNGVDIRSSKVCELGLLNYKAKHVFYPFERSKFRCRYDYYWTSVFKVEYRDHSLGQTQLAFTEAPNEALPLSCRPNFGAAWLTKDKFKVN 97
BLAST of CMJ_chr3_010770.1 vs. ExPASy TrEMBL
Match: A0A061G842|A0A061G842_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_016676 PE=4 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.183e-19 Identity = 50/102 (49.02%), Postives = 59/102 (57.84%), Query Frame = 0 Query: 3 DSVEMPPYDERPKKGVDIRSSK-----QVNFAVDMITIGLLSSRVSLG--------MLVEYLDHSLGQTRLAFAEAPNEALPHSCRPNFGAAWLTKDKFQVG 91 +S+ +P + VDIRSSK +N+ + S+ VEY DHSLGQTRLAF EAPNEALP SCRPNFGAAWLTKDKF+V Sbjct: 24 NSITIPTQCKIVSSSVDIRSSKICELGLLNYKAKHVLYHFERSKFRCRYDYYWTSVFEVEYRDHSLGQTRLAFTEAPNEALPLSCRPNFGAAWLTKDKFKVN 125
BLAST of CMJ_chr3_010770.1 vs. Araport11
Match: AT4G19140.1 (| exopolysaccharide production negative regulator | Chr4:10469830-10471275 FORWARD LENGTH=303 | 201606) HSP 1 Score: 73.1738 bits (178), Expect = 1.617e-16 Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 0 Query: 48 VEYLDHSLGQTRLAFAEAPNEALPHSCRPNFGAAWLTKDKFQVG 91 VEY D+ +GQTRLAF+EAPNEALP CRPNFGAA LTKD F+V Sbjct: 121 VEYKDNLMGQTRLAFSEAPNEALPPECRPNFGAALLTKDNFKVN 164 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_010770.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_010770.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_010770.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_010770.1_cmj_v1 ID=CMJ_chr3_010770.1_cmj_v1; Name=CMJ_chr3_010770.1; organism=Citrus maxima; type=mRNA; length=318bpback to top protein sequence of CMJ_chr3_010770.1_cmj_v1 >CMJ_chr3_010770.1_cmj_v1 ID=CMJ_chr3_010770.1_cmj_v1; Name=CMJ_chr3_010770.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=106bpback to top mRNA from alignment at chr3:27796168..27796960+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=793bp; location=Sequence derived from: chr3:27796168..27796960+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:27796168..27796960+ >CMJ_chr3_010770.1_cmj_v1 ID=CMJ_chr3_010770.1_cmj_v1; Name=CMJ_chr3_010770.1; organism=Citrus maxima; type=CDS; length=318bp; location=Sequence derived from: chr3:27796168..27796960+ (Citrus maximaback to top |