CMJ_chr3_010810.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_010810.1 vs. ExPASy TrEMBL
Match: A0A067DXW9|A0A067DXW9_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g016927mg PE=4 SV=1) HSP 1 Score: 316.62 bits (810), Expect = 9.946e-106 Identity = 153/160 (95.62%), Postives = 157/160 (98.12%), Query Frame = 0 Query: 1 VYLRRNDAGEIDPRGKIWAAPYRWGTTVIAHKKSKFRKHNLAPIEDWKDLWQPELAGRISMVNSPREVIGSVLKYMGASYNSNDIDSQVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW 160 VYLRRNDAGEIDPRGKIWAAPYRWGT VIA+KKSKFRKHNLAPIEDWKDLW+PELAGRISMVNSPREVIGSVLKYMGASYNSN+ID QVAGGKI+VQQNLALLANQ RLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW Sbjct: 82 VYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW 241
BLAST of CMJ_chr3_010810.1 vs. ExPASy TrEMBL
Match: A0A2H5PM77|A0A2H5PM77_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_149330 PE=4 SV=1) HSP 1 Score: 321.242 bits (822), Expect = 1.732e-105 Identity = 154/160 (96.25%), Postives = 159/160 (99.38%), Query Frame = 0 Query: 1 VYLRRNDAGEIDPRGKIWAAPYRWGTTVIAHKKSKFRKHNLAPIEDWKDLWQPELAGRISMVNSPREVIGSVLKYMGASYNSNDIDSQVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW 160 VYLRRNDAGEIDPRGKIWAAPYRWGT VIA+KKSKFRKHNLAPIEDWKDLW+PELAGRISMVNSPREVIGSVLKYMGASYNSN+IDSQVAGGKI+VQQNLALLAN+VRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW Sbjct: 237 VYLRRNDAGEIDPRGKIWAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDSQVAGGKISVQQNLALLANRVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW 396
BLAST of CMJ_chr3_010810.1 vs. ExPASy TrEMBL
Match: A0A2H5QM52|A0A2H5QM52_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_243150 PE=4 SV=1) HSP 1 Score: 305.449 bits (781), Expect = 3.931e-100 Identity = 149/160 (93.12%), Postives = 152/160 (95.00%), Query Frame = 0 Query: 1 VYLRRNDAGEIDPRGKIWAAPYRWGTTVIAHKKSKFRKHNLAPIEDWKDLWQPELAGRISMVNSPREVIGSVLKYMGASYNSNDIDSQVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW 160 VYLR NDAGEIDPRGKIWAAPYRWGT I +KKSKF+ HNLAPIEDWKD W PELAGRISMVNSPREVIGSVLKYMGASYNSN+ID QVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW Sbjct: 230 VYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW 389
BLAST of CMJ_chr3_010810.1 vs. ExPASy TrEMBL
Match: A0A2H5PM75|A0A2H5PM75_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_149330 PE=4 SV=1) HSP 1 Score: 302.753 bits (774), Expect = 1.781e-98 Identity = 145/151 (96.03%), Postives = 150/151 (99.34%), Query Frame = 0 Query: 10 EIDPRGKIWAAPYRWGTTVIAHKKSKFRKHNLAPIEDWKDLWQPELAGRISMVNSPREVIGSVLKYMGASYNSNDIDSQVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW 160 EIDPRGKIWAAPYRWGT VIA+KKSKFRKHNLAPIEDWKDLW+PELAGRISMVNSPREVIGSVLKYMGASYNSN+IDSQVAGGKI+VQQNLALLAN+VRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW Sbjct: 233 EIDPRGKIWAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDSQVAGGKISVQQNLALLANRVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW 383
BLAST of CMJ_chr3_010810.1 vs. ExPASy TrEMBL
Match: A0A2H5QM65|A0A2H5QM65_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_243150 PE=4 SV=1) HSP 1 Score: 288.886 bits (738), Expect = 7.046e-97 Identity = 142/152 (93.42%), Postives = 145/152 (95.39%), Query Frame = 0 Query: 9 GEIDPRGKIWAAPYRWGTTVIAHKKSKFRKHNLAPIEDWKDLWQPELAGRISMVNSPREVIGSVLKYMGASYNSNDIDSQVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW 160 GEIDPRGKIWAAPYRWGT I +KKSKF+ HNLAPIEDWKD W PELAGRISMVNSPREVIGSVLKYMGASYNSN+ID QVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW Sbjct: 3 GEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW 154
BLAST of CMJ_chr3_010810.1 vs. ExPASy TrEMBL
Match: A0A2H5PM74|A0A2H5PM74_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_149330 PE=4 SV=1) HSP 1 Score: 289.271 bits (739), Expect = 2.989e-93 Identity = 143/160 (89.38%), Postives = 148/160 (92.50%), Query Frame = 0 Query: 1 VYLRRNDAGEIDPRGKIWAAPYRWGTTVIAHKKSKFRKHNLAPIEDWKDLWQPELAGRISMVNSPREVIGSVLKYMGASYNSNDIDSQVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW 160 VYLRRNDAGEIDPRGKIWAAPYRWGT VIA+KKSKFRKHNLAPIEDWKDLW+PELAGRISMVNSPREVIGSVLKYMGASYNSN+IDSQVAGGKI+VQQNLALLAN +AFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW Sbjct: 237 VYLRRNDAGEIDPRGKIWAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDSQVAGGKISVQQNLALLAN-----------RAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW 385
BLAST of CMJ_chr3_010810.1 vs. ExPASy TrEMBL
Match: A0A2H5Q748|A0A2H5Q748_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_202050 PE=4 SV=1) HSP 1 Score: 285.419 bits (729), Expect = 6.239e-91 Identity = 152/213 (71.36%), Postives = 156/213 (73.24%), Query Frame = 0 Query: 1 VYLRRNDAGEIDPRGKIWAAPYRWGTTVIAHKKSKFRKHNLAPIE---------------------------------------------DWKDLWQPELAGRISMVNSPREVIGSVLKYMGASYNSNDIDSQVAGGKIAVQQNLALLANQ--------VRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW 160 VYL RNDAGEIDPRGKIWAAPYRWGT VIA+KKSKFRKHNLAPIE DWKDLW+PELAGRISMVNSPREVIGSVLKYMGASYNSN+ID QVAGGKI+VQQNLALLANQ VRLFDSTHYLKAFGI DVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW Sbjct: 237 VYLCRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIETAFLFNIFDDNIFRSISLTGSYEGGGIFRFLRPHSRHHPGSKEGADWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQMLISLSIPVRLFDSTHYLKAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW 449
BLAST of CMJ_chr3_010810.1 vs. ExPASy TrEMBL
Match: A0A1R3J952|A0A1R3J952_COCAP (Bacterial periplasmic spermidine/putrescine-binding protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_07140 PE=4 SV=1) HSP 1 Score: 283.108 bits (723), Expect = 1.273e-90 Identity = 131/160 (81.88%), Postives = 147/160 (91.88%), Query Frame = 0 Query: 1 VYLRRNDAGEIDPRGKIWAAPYRWGTTVIAHKKSKFRKHNLAPIEDWKDLWQPELAGRISMVNSPREVIGSVLKYMGASYNSNDIDSQVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW 160 VYLRRN G+IDP+G+IWAAPYRWGT VIA+KK+KF+KHNL PI+DW DLW+PELAGRI+MVNSPREVIG+VLKYMGASYN+ D+D QVAGG+ AVQQNL LLA QVRLFDS HYL+AF +GDVWVAVGWSSDVLP VKRMSNVAV+VPKSGASLWADLW Sbjct: 238 VYLRRNLNGDIDPQGQIWAAPYRWGTIVIAYKKTKFQKHNLPPIQDWADLWRPELAGRIAMVNSPREVIGAVLKYMGASYNTTDLDLQVAGGRDAVQQNLTLLARQVRLFDSMHYLRAFSVGDVWVAVGWSSDVLPVVKRMSNVAVIVPKSGASLWADLW 397
BLAST of CMJ_chr3_010810.1 vs. ExPASy TrEMBL
Match: W9SCC2|W9SCC2_9ROSA (Putrescine-binding periplasmic protein OS=Morus notabilis OX=981085 GN=L484_022737 PE=4 SV=1) HSP 1 Score: 281.567 bits (719), Expect = 1.601e-89 Identity = 134/160 (83.75%), Postives = 147/160 (91.88%), Query Frame = 0 Query: 1 VYLRRNDAGEIDPRGKIWAAPYRWGTTVIAHKKSKFRKHNLAPIEDWKDLWQPELAGRISMVNSPREVIGSVLKYMGASYNSNDIDSQVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW 160 VYLRRN G+IDP GKIWAAPYRWG VIA+KKSKF+KHNLAPI+DWKDLW+PELAG+ISMV SPREV+G+VLKYMGASYN +DIDSQV GG+ AVQ+NL LLANQVRLFD+THYLKAFG+GDVWVAVGWSSDVLP KR SNVAVVVPKSGASLWADLW Sbjct: 288 VYLRRNREGDIDPDGKIWAAPYRWGCMVIAYKKSKFQKHNLAPIQDWKDLWRPELAGKISMVGSPREVVGAVLKYMGASYNISDIDSQVDGGRDAVQRNLNLLANQVRLFDNTHYLKAFGVGDVWVAVGWSSDVLPIAKRTSNVAVVVPKSGASLWADLW 447
BLAST of CMJ_chr3_010810.1 vs. ExPASy TrEMBL
Match: A0A1R3JFX8|A0A1R3JFX8_9ROSI (Bacterial periplasmic spermidine/putrescine-binding protein OS=Corchorus olitorius OX=93759 GN=COLO4_16712 PE=4 SV=1) HSP 1 Score: 277.33 bits (708), Expect = 1.999e-89 Identity = 130/160 (81.25%), Postives = 146/160 (91.25%), Query Frame = 0 Query: 1 VYLRRNDAGEIDPRGKIWAAPYRWGTTVIAHKKSKFRKHNLAPIEDWKDLWQPELAGRISMVNSPREVIGSVLKYMGASYNSNDIDSQVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW 160 VYLRRN G+IDP+G+IWAAPYRWGT VIA+KK+KF+KHNL PI+DW DLW+PELAGRI+MVNSPREVIG+VLKYMGASYN+ D+D QVAGG AVQQNL LLA QVRLFDS +YL+AF +GDVWVAVGWSSDVLP VKRMSNVAV+VPKSGASLWADLW Sbjct: 159 VYLRRNLNGDIDPQGQIWAAPYRWGTIVIAYKKTKFQKHNLPPIQDWADLWRPELAGRIAMVNSPREVIGAVLKYMGASYNTTDLDLQVAGGSDAVQQNLTLLARQVRLFDSMNYLRAFSVGDVWVAVGWSSDVLPVVKRMSNVAVIVPKSGASLWADLW 318
BLAST of CMJ_chr3_010810.1 vs. ExPASy Swiss-Prot
Match: POTF_ECOLI (Putrescine-binding periplasmic protein PotF OS=Escherichia coli (strain K12) OX=83333 GN=potF PE=1 SV=3) HSP 1 Score: 73.9442 bits (180), Expect = 6.262e-15 Identity = 52/162 (32.10%), Postives = 77/162 (47.53%), Query Frame = 0 Query: 12 DPRGKIWAAPYRWGTTVIAHKKSKFRK--HNLAPIEDWKDLWQPELAGR-----ISMVNSPREVIGSVLKYMGASYNSNDIDSQVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMS------NVAVVVPKSGASLWADLW 160 DP K +A PY W TT I + K + AP++ W + +PE + +S +++P EV +VL Y+G NS D A L L N +R F S+ Y+ GD+ VA+GW+ DV A R NV+ +PK GA + D++ Sbjct: 124 DPDNK-FAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGP---ATDLLLKLRPN-IRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVF 280
BLAST of CMJ_chr3_010810.1 vs. ExPASy Swiss-Prot
Match: SPUE_PSEAE (Spermidine-binding periplasmic protein SpuE OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=spuE PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.921e-13 Identity = 46/162 (28.40%), Postives = 78/162 (48.15%), Query Frame = 0 Query: 10 EIDPRGKIWAAPYRWGTTVIAHKKSKFRK-HNLAPIEDWKDLWQPELAGR-----ISMVNSPREVIGSVLKYMGASYNSNDIDSQVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMS------NVAVVVPKSGASLWADL 159 E+ G +A PY WGT I + +K ++ PI+ W L++PE + ++ ++S E++ + L Y+G N++D ++ L + V F S+ Y+ G++ VA G+S DV A R ++ V+PK GA+LW DL Sbjct: 118 EVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEV-----LTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDL 274
BLAST of CMJ_chr3_010810.1 vs. ExPASy Swiss-Prot
Match: POTD1_HAEIN (Spermidine/putrescine-binding periplasmic protein 1 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=potD-B PE=3 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 5.992e-10 Identity = 46/157 (29.30%), Postives = 71/157 (45.22%), Query Frame = 0 Query: 10 EIDP--------RGKIWAAPYRWGTTVIAHKKSKFRKHNLAPIEDWKDLWQPELAGRISMVNSPREVIGSVLKYMGASYNSNDIDSQVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWAD 158 E+DP +G ++ P G IA + ++ W DLW+PE A ++ +++ REV L +G N+ D A K A ++ L L N V F+S + +F G+V V W+ V A K + + +V PK G LW D Sbjct: 121 ELDPDWLNKPYDKGNKYSLPQLLGAPGIAFNTNTYKGEQFT---SWADLWKPEFANKVQLLDDAREVFNIALLKIGQDPNTQD----PAIIKQAYEELLKLRPN-VLSFNSDNPANSFISGEVEVGQLWNGSVRIAKKEKAPLNMVFPKEGPVLWVD 269
BLAST of CMJ_chr3_010810.1 vs. Araport11
Match: AT1G31410.1 (| putrescine-binding periplasmic protein-like protein | Chr1:11247094-11249345 REVERSE LENGTH=524 | 201606) HSP 1 Score: 257.684 bits (657), Expect = 1.749e-84 Identity = 117/160 (73.12%), Postives = 138/160 (86.25%), Query Frame = 0 Query: 1 VYLRRNDAGEIDPRGKIWAAPYRWGTTVIAHKKSKFRKHNLAPIEDWKDLWQPELAGRISMVNSPREVIGSVLKYMGASYNSNDIDSQVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLW 160 +YLRRN AGE P G+ WA PYRWGT VIA+KKSKF+ + LAPIEDW DLW+PELAGRI+MVNSPREV+G+VLKYM ASYN+ D+DSQV GG++AV++NLA L Q+RLFDS +YLKAF +GDVWV VGWSSDV+P KRMSNV V+VPKSGA+LWADLW Sbjct: 218 IYLRRNYAGEKAPDGETWAVPYRWGTMVIAYKKSKFQNYKLAPIEDWADLWRPELAGRIAMVNSPREVVGAVLKYMRASYNTTDLDSQVPGGRLAVEKNLASLMKQIRLFDSNNYLKAFNVGDVWVTVGWSSDVIPVAKRMSNVTVIVPKSGATLWADLW 377 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_010810.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_010810.1 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 3 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_010810.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_010810.1_cmj_v1 ID=CMJ_chr3_010810.1_cmj_v1; Name=CMJ_chr3_010810.1; organism=Citrus maxima; type=mRNA; length=480bpback to top protein sequence of CMJ_chr3_010810.1_cmj_v1 >CMJ_chr3_010810.1_cmj_v1 ID=CMJ_chr3_010810.1_cmj_v1; Name=CMJ_chr3_010810.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=160bpback to top mRNA from alignment at chr3:27925529..27928491+ Legend: mRNAexonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2963bp; location=Sequence derived from: chr3:27925529..27928491+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:27925529..27928491+ >CMJ_chr3_010810.1_cmj_v1 ID=CMJ_chr3_010810.1_cmj_v1; Name=CMJ_chr3_010810.1; organism=Citrus maxima; type=CDS; length=480bp; location=Sequence derived from: chr3:27925529..27928491+ (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|