CMJ_chr3_010940.1
|
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_010940.1 vs. ExPASy TrEMBL
Match: A0A2H5PMB1|A0A2H5PMB1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_149610 PE=4 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 1.508e-72 Identity = 116/128 (90.62%), Postives = 118/128 (92.19%), Query Frame = 0 Query: 1 MATQIATLSSRLIQHRKTKGSKKIWPTTSHQHSERWTHHNSDQINDDHVKGKKMKMKMKMKRKPKHWAQERSRLGFWYVTTSIRYILSKARAFYNEFCSEKYDDNPKVFEQVMIADPYFSIPVIPPPM 128
MATQIATLSSRLIQH KTKGSKKIWPTTSHQHSERWTHHNSDQINDDHVKGKKMK K K HWAQERSRLGFWYVTTSIRYIL KARAFYNEFCSEKYDDNPK+F+QVMIADPYFSIPVIPPPM
Sbjct: 1 MATQIATLSSRLIQHPKTKGSKKIWPTTSHQHSERWTHHNSDQINDDHVKGKKMKRKPK------HWAQERSRLGFWYVTTSIRYILRKARAFYNEFCSEKYDDNPKMFKQVMIADPYFSIPVIPPPM 122
BLAST of CMJ_chr3_010940.1 vs. ExPASy TrEMBL
Match: V4T963|V4T963_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002850mg PE=4 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 3.322e-72 Identity = 118/128 (92.19%), Postives = 119/128 (92.97%), Query Frame = 0 Query: 1 MATQIATLSSRLIQHRKTKGSKKIWPTTSHQHSERWTHHNSDQINDDHVKGKKMKMKMKMKRKPKHWAQERSRLGFWYVTTSIRYILSKARAFYNEFCSEKYDDNPKVFEQVMIADPYFSIPVIPPPM 128
MATQIATLSSRLIQH KTKGSKKIWPTTSHQHSERWTHHNSDQINDDHVK KMKMKRKPKHWAQERSRLGFWYVTTSIRY L KARAFYNEFCSEKYDDNPKVF+QVMIADPYFSIPVIPPPM
Sbjct: 1 MATQIATLSSRLIQHPKTKGSKKIWPTTSHQHSERWTHHNSDQINDDHVK----GKKMKMKRKPKHWAQERSRLGFWYVTTSIRYTLRKARAFYNEFCSEKYDDNPKVFKQVMIADPYFSIPVIPPPM 124
BLAST of CMJ_chr3_010940.1 vs. ExPASy TrEMBL
Match: A0A2H5PN05|A0A2H5PN05_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_149590 PE=4 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 8.534e-72 Identity = 120/128 (93.75%), Postives = 122/128 (95.31%), Query Frame = 0 Query: 1 MATQIATLSSRLIQHRKTKGSKKIWPTTSHQHSERWTHHNSDQINDDHVKGKKMKMKMKMKRKPKHWAQERSRLGFWYVTTSIRYILSKARAFYNEFCSEKYDDNPKVFEQVMIADPYFSIPVIPPPM 128
MATQIATLSSRLIQHRKTKGSKKIWPTTSHQHSERWTHHNSDQIND HVKGKKMKMKMK KPKHWAQERSRL FWYVTTSIRY+L KARAFYNEFCSEKYDDNPKVF+QVMIADPYFSIPVIPPPM
Sbjct: 1 MATQIATLSSRLIQHRKTKGSKKIWPTTSHQHSERWTHHNSDQINDAHVKGKKMKMKMKR--KPKHWAQERSRLRFWYVTTSIRYLLRKARAFYNEFCSEKYDDNPKVFKQVMIADPYFSIPVIPPPM 126
BLAST of CMJ_chr3_010940.1 vs. ExPASy TrEMBL
Match: A0A1Q3D8H6|A0A1Q3D8H6_CEPFO (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_32173 PE=4 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 8.782e-20 Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 0 Query: 58 MKMKRKPKHWAQERSRLGFWYVTTSIRYILSKARAFYNEFCSEKYDDNPKVFEQVMIADPYFSIPVIPPP 127
M K+KP HWA + RLG WY+T+SI YIL KA+AFYNE C + ++D + +QV + D YFS PV+PPP
Sbjct: 42 MPRKKKPGHWALQFPRLGIWYMTSSISYILRKAKAFYNECCCDAFEDPVLMGKQVTLVDSYFSTPVVPPP 111
BLAST of CMJ_chr3_010940.1 vs. ExPASy TrEMBL
Match: A0A4V6A833|A0A4V6A833_POPAL (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000176990 PE=4 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 9.129e-20 Identity = 57/149 (38.26%), Postives = 83/149 (55.70%), Query Frame = 0 Query: 1 MATQIATLSSRLIQHRKTKGSKKIWPTTSHQHSERWT-----------HHNSDQINDDHVK-------GKKMKMKMKMKRKPKHWAQERSR---LGFWYVTTSIRYILSKARAFYNEFCSEKY-DDNPKVFEQVMIADPYFSIPVIPPP 127
MATQ +L+S +Q RK G K+ T S H ER T ++ + ND ++ GK+M + K++++ + + R G WY+++SI YIL KARAFYNEFC + Y DD+ ++++ADPYFS PVIPPP
Sbjct: 1 MATQFDSLAS--LQLRK--GKKQF--TRSASHGERVTKSLPADRRSSSYYRQYKANDVRLENCSRAGDGKEMTKRNKLEKRERDRGRARELPRYFGLWYMSSSISYILRKARAFYNEFCCDNYFDDSSIRGHELVVADPYFSFPVIPPP 143
BLAST of CMJ_chr3_010940.1 vs. ExPASy TrEMBL
Match: B9H054|B9H054_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G105900 PE=4 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 2.967e-19 Identity = 58/149 (38.93%), Postives = 87/149 (58.39%), Query Frame = 0 Query: 1 MATQIATLSSRLIQHRKTKGSKKIWPTTSHQHSERWT-----------HHNSDQINDDHVK-------GKKM--KMKMKMKRKPKHWAQERSR-LGFWYVTTSIRYILSKARAFYNEFCSEKY-DDNPKVFEQVMIADPYFSIPVIPPP 127
MATQ +L+S +Q RK G K+ T S H ER T ++ + ND ++ GK+M + K++ +++ + WA+E R L WY+++SI YIL KAR+FYNEFC + Y DD+ + ++++A PYFS PVIPPP
Sbjct: 1 MATQSDSLAS--LQLRK--GKKQF--TRSASHGERVTKSLPADRRSSSYYRQYKANDVRLENGSRAGDGKEMTRRNKLQKRKRDRGWARELPRYLDLWYMSSSISYILRKARSFYNEFCCDNYFDDSSIMGHELVLAGPYFSFPVIPPP 143
BLAST of CMJ_chr3_010940.1 vs. ExPASy TrEMBL
Match: A0A7J7CMI0|A0A7J7CMI0_TRIWF (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW15G00740 PE=4 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 2.645e-18 Identity = 47/130 (36.15%), Postives = 72/130 (55.38%), Query Frame = 0 Query: 1 MATQIATLSSRLIQHRKTKGSKKIWP--TTSHQHSERWTHHNSDQINDDHVKGKKMKMKMKMKRKPKHWAQERSR-LGFWYVTTSIRYILSKARAFYNEFCSEKYDDNPKVFEQVMIADPYFSIPVIPPP 127
MATQ TL+S + I+ S+ + R + +++ N D + K+ K+K + W+ + R LG WY+T++I YIL KARAFYNEFC + +DD ++ + DPYF +PV+PPP
Sbjct: 14 MATQFVTLAS--FNQIAPSAERVIFDHRVNSNMKNRRKLENCAEEQNGDAERKKR-----KVKGDRRCWSGKLPRILGLWYMTSTISYILRKARAFYNEFCCDTFDDPFVGTNELTLVDPYFGLPVVPPP 136
BLAST of CMJ_chr3_010940.1 vs. ExPASy TrEMBL
Match: A0A2P6PBB6|A0A2P6PBB6_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0214861 PE=4 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 2.504e-16 Identity = 42/88 (47.73%), Postives = 48/88 (54.55%), Query Frame = 0 Query: 45 NDDHVKGKKMKMKMKMKRKPKHWAQERSRLGFWYVTTSIRYILSKARAFYNEFCSEKYDDNP-------KVFEQVMIADPYFSIPVIP 125
N DHVKGKK K K + QE L WYVTT I +IL KARAFYNEFC + D +VM+ DPYFSIP+ P
Sbjct: 63 NGDHVKGKKNKFA-----KGRSETQEHRGLSLWYVTTCISHILRKARAFYNEFCCDAITDGGDDTTRRQGYNHEVMLVDPYFSIPITP 145
BLAST of CMJ_chr3_010940.1 vs. ExPASy TrEMBL
Match: A0A5N5NB14|A0A5N5NB14_9ROSI (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_004386 PE=4 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 8.517e-16 Identity = 56/152 (36.84%), Postives = 79/152 (51.97%), Query Frame = 0 Query: 1 MATQIATLSSRLIQHRKTKGSKKIWPTTSHQHSERWTHH-NSDQINDDHVKGKKMKMKMKMKRKPK---------------------HWAQERSR-LGFWYVTTSIRYILSKARAFYNEFCSEKY--DDNPKVFEQVMIADPYFSIPVIPPP 127
MATQ+ L+S +Q RK G K++ S H ER SD+ + + + K KM+ P+ W +E R LG W++++SI YIL K+RAFYNEFC + Y D + + ++M+ADPYFS PVIPPP
Sbjct: 60 MATQLDGLAS--LQLRK--GKKQL--ARSASHGERVIESLPSDRQSSSYYRQHKTT-DFKMENGPRAGDGEEMTGRRKKLRKRKRDRGWKRELPRYLGLWFMSSSISYILRKSRAFYNEFCCDNYFDDSSSAMGHELMLADPYFSFPVIPPP 204
BLAST of CMJ_chr3_010940.1 vs. ExPASy TrEMBL
Match: A0A6N2K033|A0A6N2K033_SALVM (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS7865 PE=4 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.723e-15 Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 0 Query: 74 LGFWYVTTSIRYILSKARAFYNEFCSEKY--DDNPKVFEQVMIADPYFSIPVIPPP 127
LG W++++SI YIL K+RAFYNEFC + Y D + + ++M+ADPYFS PVIPPP
Sbjct: 90 LGLWFMSSSISYILRKSRAFYNEFCCDNYFDDSSSAMGHELMLADPYFSFPVIPPP 145
BLAST of CMJ_chr3_010940.1 vs. Araport11
Match: AT4G19430.1 (| hypothetical protein | Chr4:10598606-10599088 REVERSE LENGTH=160 | 201606) HSP 1 Score: 57.3806 bits (137), Expect = 4.154e-11 Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 0 Query: 76 FWYVTTSIRYILSKARAFYNEFCSEKYDDNPKVFEQVMIADPYFSIPVI 124
WY+ SI +IL KARAFYNEFC + Y ++ + + +PYFSIPVI
Sbjct: 115 LWYMKCSISHILRKARAFYNEFCCDTYAES----NTMAVVEPYFSIPVI 159 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_010940.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_010940.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_010940.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_010940.1_cmj_v1 ID=CMJ_chr3_010940.1_cmj_v1; Name=CMJ_chr3_010940.1; organism=Citrus maxima; type=mRNA; length=387bpback to top protein sequence of CMJ_chr3_010940.1_cmj_v1 >CMJ_chr3_010940.1_cmj_v1 ID=CMJ_chr3_010940.1_cmj_v1; Name=CMJ_chr3_010940.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=129bpback to top mRNA from alignment at chr3:28444979..28445365+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=387bp; location=Sequence derived from: chr3:28444979..28445365+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:28444979..28445365+ >CMJ_chr3_010940.1_cmj_v1 ID=CMJ_chr3_010940.1_cmj_v1; Name=CMJ_chr3_010940.1; organism=Citrus maxima; type=CDS; length=387bp; location=Sequence derived from: chr3:28444979..28445365+ (Citrus maximaback to top |