CMJ_chr3_010970.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_010970.1 vs. ExPASy TrEMBL
Match: A0A2H5PMB3|A0A2H5PMB3_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_149630 PE=4 SV=1) HSP 1 Score: 358.221 bits (918), Expect = 4.986e-125 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 Query: 1 MGRNSQLHVVLAAKLSLDRKTMYMKLISADFVPVLFLHFWWVYGVDTPLMNLTAKTCFIALIMTVLFEIMYDHHQEPPKSLIMSSLAFRICAVCPNVALYVAPLALFLKPSDDEGLFYLMISVLLGFSYFQISFIQPLLLDCDADTLKFIRSQHLVFMETNIAAATTVKEPPNK 174 MGRNSQLHVVLAAKLSLDRKTMYMKLISADFVPVLFLHFWWVYGVDTPLMNLTAKTCFIALIMTVLFEIMYDHHQEPPKSLIMSSLAFRICAVCPNVALYVAPLALFLKPSDDEGLFYLMISVLLGFSYFQISFIQPLLLDCDADTLKFIRSQHLVFMETNIAAATTVKEPPNK Sbjct: 1 MGRNSQLHVVLAAKLSLDRKTMYMKLISADFVPVLFLHFWWVYGVDTPLMNLTAKTCFIALIMTVLFEIMYDHHQEPPKSLIMSSLAFRICAVCPNVALYVAPLALFLKPSDDEGLFYLMISVLLGFSYFQISFIQPLLLDCDADTLKFIRSQHLVFMETNIAAATTVKEPPNK 174
BLAST of CMJ_chr3_010970.1 vs. ExPASy TrEMBL
Match: A0A1S8AD28|A0A1S8AD28_CITLI (Uncharacterized protein OS=Citrus limon OX=2708 PE=4 SV=1) HSP 1 Score: 213.772 bits (543), Expect = 9.378e-69 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 Query: 70 MYDHHQEPPKSLIMSSLAFRICAVCPNVALYVAPLALFLKPSDDEGLFYLMISVLLGFSYFQISFIQPLLLDCDADTLKFIRSQHLVFMETNIAAATTVKEPP 172 MYDHHQEPPKSLIMSSLAFRICAVCPNVALYVAPLALFLKPSDDEGLFYLMISVLLGFSYFQISFIQPLLLDCDADTLKFIRSQHLVFMETNIAAATTVKEPP Sbjct: 1 MYDHHQEPPKSLIMSSLAFRICAVCPNVALYVAPLALFLKPSDDEGLFYLMISVLLGFSYFQISFIQPLLLDCDADTLKFIRSQHLVFMETNIAAATTVKEPP 103
BLAST of CMJ_chr3_010970.1 vs. ExPASy TrEMBL
Match: A0A067DTR5|A0A067DTR5_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g046736mg PE=4 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 4.904e-60 Identity = 119/207 (57.49%), Postives = 133/207 (64.25%), Query Frame = 0 Query: 1 MGRNSQLHVVLAAKLSLDRKTMYMKLISADFVPVLFLHFWW--VYGVDTPLMNLTAKTCFIALIMTVLFE------------------------------IMYDHHQEPPKSLIMSSLAFRICAVCPNVA-LYVAPLALFLKPSDDEGLFYLMISVLLGFSYFQISFIQPLLLDCDADTLKFIRSQHLVFMETNIAAATTVKEPPNK 174 MG NS+LHVVL LSLDRKTMYMKLI D+ PVL L WW +YGVD PL+ LTA+TC +ALI+TVLFE IMYDHHQ PPKS ++SS+ F A N A LY+APL LFL+P D + FYLM VL GFS QISFIQPLLL+CDADT KFIRSQ LVF ET AAATT KEPP Sbjct: 1 MGSNSELHVVLTTMLSLDRKTMYMKLILLDYFPVLLLFCWWFVMYGVDAPLITLTAETCSMALILTVLFEVRWRCLFKYFKKEKDLKNIIQFTETLQYCQIMYDHHQAPPKSFMLSSIVFLNFAGVLNAAVLYIAPLGLFLEP-DGDVFFYLMGFVLFGFSCLQISFIQPLLLNCDADTFKFIRSQALVFSETTTAAATTAKEPPES 206
BLAST of CMJ_chr3_010970.1 vs. ExPASy TrEMBL
Match: V4T3Y4|V4T3Y4_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002420mg PE=4 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 5.415e-60 Identity = 119/206 (57.77%), Postives = 133/206 (64.56%), Query Frame = 0 Query: 1 MGRNSQLHVVLAAKLSLDRKTMYMKLISADFVPVLFLHFWW--VYGVDTPLMNLTAKTCFIALIMTVLFE------------------------------IMYDHHQEPPKSLIMSSLAFRICAVCPNVA-LYVAPLALFLKPSDDEGLFYLMISVLLGFSYFQISFIQPLLLDCDADTLKFIRSQHLVFMETNIAAATTVKEPPN 173 MG NS+LHVVL LSLDRKTMYMKLI D+ PVL L WW +YGVD PL+ LTA+TC +ALI+TVLFE IMYDHHQ PPKS ++SS+ F A N A LY+APL LFL+P D + FYLM VL GFS QISFIQPLLL+CDADT KFIRSQ LVF ET AAATT KEPP Sbjct: 8 MGSNSELHVVLTTMLSLDRKTMYMKLILLDYFPVLLLFCWWFVMYGVDAPLITLTAETCSMALILTVLFEVRWRCLFKYFKKEKDLKNIIQFTETLQYCQIMYDHHQAPPKSFMLSSIVFLNFAGVLNAAVLYIAPLGLFLEP-DGDVFFYLMGFVLFGFSCLQISFIQPLLLNCDADTFKFIRSQALVFSETTTAAATTAKEPPE 212
BLAST of CMJ_chr3_010970.1 vs. ExPASy TrEMBL
Match: A0A067DIN3|A0A067DIN3_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044520mg PE=4 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 3.345e-55 Identity = 86/101 (85.15%), Postives = 91/101 (90.10%), Query Frame = 0 Query: 70 MYDHHQEPPKSLIMSSLAFRICAVCPNVALYVAPLALFLKPSDDEGLFYLMISVLLGFSYFQISFIQPLLLDCDADTLKFIRSQHLVFMETNIAAATTVKE 170 MYDHH+EPPKSLIMSSLAFRICA+CPN+ALYV PLALFL P +DEGLFYLMIS LLGFSYFQISFIQPLLLDCD TLKFIRSQ +VFMETN AATTVK Sbjct: 1 MYDHHEEPPKSLIMSSLAFRICAICPNMALYVVPLALFLTPFNDEGLFYLMISGLLGFSYFQISFIQPLLLDCDTATLKFIRSQPVVFMETNTDAATTVKR 101
BLAST of CMJ_chr3_010970.1 vs. ExPASy TrEMBL
Match: V4SZ48|V4SZ48_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002930mg PE=4 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 6.042e-55 Identity = 86/101 (85.15%), Postives = 91/101 (90.10%), Query Frame = 0 Query: 70 MYDHHQEPPKSLIMSSLAFRICAVCPNVALYVAPLALFLKPSDDEGLFYLMISVLLGFSYFQISFIQPLLLDCDADTLKFIRSQHLVFMETNIAAATTVKE 170 MYDHH+EPPKSLIMSSLAFRICA+CPN+ALYV PLALFL P +DEGLFYLMIS LLGFSYFQISFIQPLLLDCD TLKFIRSQ +VFMETN AATTVK Sbjct: 1 MYDHHEEPPKSLIMSSLAFRICAICPNMALYVVPLALFLTPFNDEGLFYLMISGLLGFSYFQISFIQPLLLDCDIATLKFIRSQPVVFMETNTDAATTVKR 101
BLAST of CMJ_chr3_010970.1 vs. ExPASy TrEMBL
Match: A0A2H5PMC3|A0A2H5PMC3_CITUN (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_149670 PE=4 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 7.144e-11 Identity = 50/105 (47.62%), Postives = 55/105 (52.38%), Query Frame = 0 Query: 68 EIMYDHHQEPPKSLIMSSLAFRICAVCPNVA-LYVAPLALFLKPSDDEGLFYLMISVLLGFSYFQISFIQPLLLDCDADTLKFIRSQHLVFMETNIAAATTVKEP 171 +IMYDHHQ PKS ++SSL F A N A LY+APL PLLL+CDADT KFIRSQ LVF ET AAATT KEP Sbjct: 22 QIMYDHHQATPKSFMLSSLVFLNFAGFLNAATLYIAPL--------------------------------PLLLNCDADTFKFIRSQPLVFSETTTAAATTAKEP 94 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_010970.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 7 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_010970.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_010970.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_010970.1_cmj_v1 ID=CMJ_chr3_010970.1_cmj_v1; Name=CMJ_chr3_010970.1; organism=Citrus maxima; type=mRNA; length=525bpback to top protein sequence of CMJ_chr3_010970.1_cmj_v1 >CMJ_chr3_010970.1_cmj_v1 ID=CMJ_chr3_010970.1_cmj_v1; Name=CMJ_chr3_010970.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=175bpback to top mRNA from alignment at chr3:28483373..28484437+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1065bp; location=Sequence derived from: chr3:28483373..28484437+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:28483373..28484437+ >CMJ_chr3_010970.1_cmj_v1 ID=CMJ_chr3_010970.1_cmj_v1; Name=CMJ_chr3_010970.1; organism=Citrus maxima; type=CDS; length=525bp; location=Sequence derived from: chr3:28483373..28484437+ (Citrus maximaback to top |