CMJ_chr3_011530.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_011530.1 vs. ExPASy TrEMBL
Match: A0A2H5NX24|A0A2H5NX24_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_083680 PE=4 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 4.252e-77 Identity = 137/226 (60.62%), Postives = 152/226 (67.26%), Query Frame = 0 Query: 1 MQSLLAKQPQDVELRTTQERNPEDLTFNDVFRSFTEKDRNQLDDITENMESEIAGLEKTLSETGDKGPKATISERYPYSDEALAHFILRLKKSLRSKTTNVKFWDRDDVLVNVKS---KRI----------VLANY-----------------------------------GTDTKIYR-KKKLYELETEKDKLSEKIDQLQKDIEQLTANTEELNLESREIKSSA 177
MQSLL KQPQDVELRT QERNPEDLTF+DVF SFTEKDRNQLDDITEN+ESEIAG++KTLSETGD+G K TISE YPYSD+ LA FILRL+ SLRSK +V+FWD DDVLVNV R+ +L Y TD + + KKKLYELE EKDKLSE IDQL+KDIEQLTAN E+LNLESREIK SA
Sbjct: 36 MQSLLEKQPQDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVNVMVWGRHRVTEKLAPMLKDLLIKYRDIDVDCSLNENCSMYFFAMLCGLMQSLCKTKIMDATDFLVVKWKKKLYELEMEKDKLSENIDQLKKDIEQLTANIEDLNLESREIKPSA 261
BLAST of CMJ_chr3_011530.1 vs. ExPASy TrEMBL
Match: A0A067D8P8|A0A067D8P8_CITSI (Phorbol-ester/DAG-type domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g043301mg PE=4 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 4.210e-59 Identity = 92/113 (81.42%), Postives = 101/113 (89.38%), Query Frame = 0 Query: 1 MQSLLAKQPQDVELRTTQERNPEDLTFNDVFRSFTEKDRNQLDDITENMESEIAGLEKTLSETGDKGPKATISERYPYSDEALAHFILRLKKSLRSKTTNVKFWDRDDVLVNV 113
MQSLL KQPQDVELRT QERNPEDLTF+DVF SFTEKDRNQLDDITEN+ESEIAG++KTLSETGD+G K TISE YPYSD+ LA FILRL+ SLRSK +V+FWD DDVLVNV
Sbjct: 131 MQSLLEKQPQDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVNV 243
BLAST of CMJ_chr3_011530.1 vs. ExPASy TrEMBL
Match: A0A2H5NX41|A0A2H5NX41_CITUN (C1_2 domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_083700 PE=4 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 3.854e-56 Identity = 125/255 (49.02%), Postives = 147/255 (57.65%), Query Frame = 0 Query: 1 MQSLLAKQPQDVELRTTQERNPEDLTFNDVFRSFTEKDRNQLDDITENMESEIAGLEKTLSETGDKGPKATISERYPYSDEALAHFILRLKKSLRSKTTNVKFWDRDDVLVNVK--SKRIVLANYG--------------------------------------TDTKIYRKKKL--------YELETE---KDKLSE---KIDQLQKDIEQ-------LTANTEELNLESREIKSSAQDFEISSFSSEDNRLSE 194
MQSL K+P DVELRT +ERN EDLTF+DVF SF +KD NQLDDITENMESEIAG+ KTLSETGD+G K TISE YPYSDEALA FILRL+ + K V+FWD DDVLVNV+ + V+A + TKI K Y +T+ D+L E K D+L + I+Q LTAN EELNLESREIKS AQ EI + S +DNRLS+
Sbjct: 110 MQSLQEKEPHDVELRTIKERNLEDLTFHDVFSSFIKKDSNQLDDITENMESEIAGITKTLSETGDQGSKVTISESYPYSDEALALFILRLQNGIPRKIETVEFWDMDDVLVNVEVWGRYRVIAKFAPMLKDLLTKYSDIDGDCSLNENCSMYFFAMLCGVMQDLCRTKIMNAKDFLKRIVLANYGTDTKIYRNDRLYELETKKDKLSEKIDQLKKEIEQLTANIEELNLESREIKSLAQGSEILNLSLDDNRLSD 364
BLAST of CMJ_chr3_011530.1 vs. ExPASy TrEMBL
Match: V4V309|V4V309_CITCL (Phorbol-ester/DAG-type domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10003276mg PE=4 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 1.925e-50 Identity = 88/122 (72.13%), Postives = 100/122 (81.97%), Query Frame = 0 Query: 1 MQSLLAKQPQDVELRTTQERNPEDLTFNDVFRSFTEKDRNQLDDITENMESEIAGLEKTLSETGDKGPKATISERYPYSDEALAHFILRLKKSLRSKTTNVKFWDRDDVLVNVK---SKRIV 119
MQSL K+P DVELRT +ERNPEDLTF+DVF SFT+KDRNQLDDITENMESEIAG+ KTLSETGD+G K TISE YPYSDEALA FILRL+ + K V+FWD DDVLVNV+ S R++
Sbjct: 356 MQSLQEKEPYDVELRTIKERNPEDLTFHDVFSSFTKKDRNQLDDITENMESEIAGITKTLSETGDQGSKVTISESYPYSDEALALFILRLENGIPRKIETVEFWDMDDVLVNVEVWGSYRVI 477 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_011530.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 4 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_011530.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_011530.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_011530.1_cmj_v1 ID=CMJ_chr3_011530.1_cmj_v1; Name=CMJ_chr3_011530.1; organism=Citrus maxima; type=mRNA; length=597bpback to top protein sequence of CMJ_chr3_011530.1_cmj_v1 >CMJ_chr3_011530.1_cmj_v1 ID=CMJ_chr3_011530.1_cmj_v1; Name=CMJ_chr3_011530.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=199bpback to top mRNA from alignment at chr3:29328844..29329698+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=855bp; location=Sequence derived from: chr3:29328844..29329698+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:29328844..29329698+ >CMJ_chr3_011530.1_cmj_v1 ID=CMJ_chr3_011530.1_cmj_v1; Name=CMJ_chr3_011530.1; organism=Citrus maxima; type=CDS; length=597bp; location=Sequence derived from: chr3:29328844..29329698+ (Citrus maximaback to top |