CMJ_chr3_011700.3 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr3_011700.3
Unique Name	CMJ_chr3_011700.3_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	411

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caucmjL119	Citrus australis genome v1.0 (UQ)	Citrus australis
cccmjL108	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cmjdvaR115	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
cmjdvbR109	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
clecmjL627	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecmjL661	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmjfhsR203	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmjzkR213	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
cmcmjL210	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmjcsnR264	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjcsnR272	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjminR0306	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjminR0366	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjeglR0427	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR0511	Citrus glauca CRC3463 genome v1	Citrus glauca
ccrcmjL223	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL565	Citrus australasica CRC3672 genome v1	Citrus australasica
cmjcsgR151	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
abhcmjL143	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
cizcmjL127	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cllcmjL155	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cllcmjL391	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cmjcmxR214	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmmR173	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
cmjcmmR178	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
caacmjL079	Citrus australasica cv. AZM genome v1.0	Citrus australasica
chhcmjL201	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
cmjmpkR152	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
clhcmjL414	Clausena lansium cv. HP genome v1.0	Clausena lansium
cmjmpjR204	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
aeacmjL359	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
cigcmjL234	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cigcmjL251	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cmhcmjL143	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmjlssR189	Luvunga scandens cv. SYT genome v1.0	Luvunga scandens
clxcmjL488	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
cmjcsjR269	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR292	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjneiR156	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cmjcraR257	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR272	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cchcmjL108	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
ciucmjL164	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL540	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgacmjL166	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL552	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgucmjL174	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL537	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cmjcumR196	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
cmjcrcR168	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcstR159	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr3_011700	CMJ_chr3_011700_cmj_v1	Citrus maxima	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_011700.3_cmj_v1	CMJ_chr3_011700.3_cmj_v1	Citrus maxima	polypeptide
CMJ_chr3_011700.3_cmj_v1	CMJ_chr3_011700.3_cmj_v1-protein	Citrus maxima	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_011700.3.exon4	CMJ_chr3_011700.3.exon4_cmj_v1	Citrus maxima	exon
CMJ_chr3_011700.3.exon3	CMJ_chr3_011700.3.exon3_cmj_v1	Citrus maxima	exon
CMJ_chr3_011700.3.exon2	CMJ_chr3_011700.3.exon2_cmj_v1	Citrus maxima	exon
CMJ_chr3_011700.3.exon1	CMJ_chr3_011700.3.exon1_cmj_v1	Citrus maxima	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_011700.3.utr3.2	CMJ_chr3_011700.3.utr3.2_cmj_v1	Citrus maxima	three_prime_UTR
CMJ_chr3_011700.3.utr3.1	CMJ_chr3_011700.3.utr3.1_cmj_v1	Citrus maxima	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_011700.3.cds.3	CMJ_chr3_011700.3.cds.3_cmj_v1	Citrus maxima	CDS
CMJ_chr3_011700.3.cds.2	CMJ_chr3_011700.3.cds.2_cmj_v1	Citrus maxima	CDS
CMJ_chr3_011700.3.cds.1	CMJ_chr3_011700.3.cds.1_cmj_v1	Citrus maxima	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_011700.3.utr5.1	CMJ_chr3_011700.3.utr5.1_cmj_v1	Citrus maxima	five_prime_UTR

Homology

[Close]

BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match: A0A2H5PPA4|A0A2H5PPA4_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_154820 PE=4 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 8.033e-91
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0

Query:    1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQG 133
            MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQG
Sbjct:    1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQG 133

[Close]

BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match: V4SZJ1|V4SZJ1_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002536mg PE=4 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 2.485e-90
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0

Query:    1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQG 133
            MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMP+RQGGLPAADTRETDINADSYDQG
Sbjct:    1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINADSYDQG 133

[Close]

BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match: A0A067DE25|A0A067DE25_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028991mg PE=4 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 9.679e-90
Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 0

Query:    1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQG 133
            MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMP+RQGGLPAADTRETDINA+SYDQG
Sbjct:    1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINANSYDQG 133

[Close]

BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match: V4SF52|V4SF52_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002536mg PE=4 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 7.745e-87
Identity = 131/142 (92.25%), Postives = 132/142 (92.96%), Query Frame = 0

Query:    1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPIL---------TNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQG 133
            MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPI          TNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMP+RQGGLPAADTRETDINADSYDQG
Sbjct:    1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPIFNLVLQCIYRTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINADSYDQG 142

[Close]

BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match: A0A067DQ03|A0A067DQ03_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028991mg PE=4 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 2.475e-86
Identity = 130/142 (91.55%), Postives = 132/142 (92.96%), Query Frame = 0

Query:    1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPIL---------TNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQG 133
            MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPI          TNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMP+RQGGLPAADTRETDINA+SYDQG
Sbjct:    1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPIFNLVLQCIYRTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINANSYDQG 142

[Close]

BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match: A0A5D2U252|A0A5D2U252_GOSMU (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D08G257200v1 PE=4 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 6.741e-42
Identity = 77/134 (57.46%), Postives = 96/134 (71.64%), Query Frame = 0

Query:    4 KQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQE-QQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQGTTL 136
            KQ L+ DAW+REA+EA KLVE+I+ RV NK+   Q   +   DI ARSKLL+VG+K+DRLESLLRNPPSKPILTNED++ RWKMLSD+QLR KALA+RLYA+  P   R G     +  + +     Y QG +L
Sbjct:    3 KQALMADAWIREAEEALKLVEDIENRVNNKNPSLQHHGNCVIDIAARSKLLDVGIKIDRLESLLRNPPSKPILTNEDIDYRWKMLSDMQLRTKALALRLYAL--PTSSRPGNSTHGNHNDMNKIITDYIQGRSL 134

[Close]

BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match: A0A6J1A8X1|A0A6J1A8X1_9ROSI (uncharacterized protein LOC110415866 isoform X2 OS=Herrania umbratica OX=108875 GN=LOC110415866 PE=4 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.537e-42
Identity = 78/133 (58.65%), Postives = 97/133 (72.93%), Query Frame = 0

Query:    4 KQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQE-QQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQGTT 135
            KQ L+ DAW+REAQEA KLVE+I+ RVKNK+   + Q++   DI ARSKLLE G+KLDRLESLLRNPPSKPILTNEDL+ RW MLS++QLR KALA+ LYA+  P   R G L   + +  + N +  +Q  T
Sbjct:    3 KQALMGDAWIREAQEASKLVEDIETRVKNKNPSLKHQENRLVDITARSKLLEAGIKLDRLESLLRNPPSKPILTNEDLDYRWNMLSEMQLRTKALALSLYAL--PTSSRPGCLTPGNAKAINTNVNDCEQDQT 133

[Close]

BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match: A0A061F374|A0A061F374_THECC (Syntaxin of plants 52, putative isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_026395 PE=4 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.066e-41
Identity = 79/133 (59.40%), Postives = 96/133 (72.18%), Query Frame = 0

Query:    4 KQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQE-QQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQGTT 135
            KQ L+ DAW+REAQEA KLVE+I+ RVKNK+   + Q++   DI ARSKLLE G+KLDRLESLLRNPPSKPILTNEDL+ RWKMLS++QLR KALA+ LYA+  P   R G L   +    + N    +Q  T
Sbjct:    3 KQALMGDAWIREAQEASKLVEDIETRVKNKNPSLKHQENRLVDITARSKLLEAGIKLDRLESLLRNPPSKPILTNEDLDYRWKMLSELQLRTKALALSLYAL--PTSSRPGCLTPENAEAINTNVSDCEQDQT 133

[Close]

BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match: A0A7J9L5Y6|A0A7J9L5Y6_GOSSC (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_022175 PE=4 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 4.773e-41
Identity = 71/103 (68.93%), Postives = 86/103 (83.50%), Query Frame = 0

Query:    4 KQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQE-QQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMP 105
            KQ L+ DAW+REA+EA KLVE+I+ RV NK+   Q   +   DI ARSKLL+VG+K+DRLESLLRNPPSKPILTNED++ RWKMLSD+QLR KALA+RLYA+P
Sbjct:    3 KQALMADAWIREAEEASKLVEDIENRVNNKNPSLQHHGNCVIDIAARSKLLDVGIKIDRLESLLRNPPSKPILTNEDIDYRWKMLSDMQLRTKALALRLYALP 105

[Close]

BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match: A0A1U8IQC5|A0A1U8IQC5_GOSHI (uncharacterized protein LOC107899148 OS=Gossypium hirsutum OX=3635 GN=LOC107899148 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.001e-40
Identity = 71/103 (68.93%), Postives = 86/103 (83.50%), Query Frame = 0

Query:    4 KQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQE-QQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMP 105
            KQ L+ DAW+REA+EA KLVE+I+ RV NK+   Q   +   DI ARSKLL+VG+K+DRLESLLRNPPSKPILTNED++ RWKMLSD+QLR KALA+RLYA+P
Sbjct:    3 KQALMADAWIREAEEALKLVEDIENRVNNKNPSLQHHGNCVIDIAARSKLLDVGIKIDRLESLLRNPPSKPILTNEDIDYRWKMLSDMQLRTKALALRLYALP 105

The following BLAST results are available for this feature:

BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL

BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 10

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A2H5PPA4\|A0A2H5PPA4_CITUN	8.033e-91	100.00	Uncharacterized protein OS=Citrus unshiu OX=55188 ...	[more]
V4SZJ1\|V4SZJ1_CITCL	2.485e-90	99.25	Uncharacterized protein OS=Citrus clementina OX=85...	[more]
A0A067DE25\|A0A067DE25_CITSI	9.679e-90	98.50	Uncharacterized protein OS=Citrus sinensis OX=2711...	[more]
V4SF52\|V4SF52_CITCL	7.745e-87	92.25	Uncharacterized protein OS=Citrus clementina OX=85...	[more]
A0A067DQ03\|A0A067DQ03_CITSI	2.475e-86	91.55	Uncharacterized protein OS=Citrus sinensis OX=2711...	[more]
A0A5D2U252\|A0A5D2U252_GOSMU	6.741e-42	57.46	Uncharacterized protein OS=Gossypium mustelinum OX...	[more]
A0A6J1A8X1\|A0A6J1A8X1_9ROSI	9.537e-42	58.65	uncharacterized protein LOC110415866 isoform X2 OS...	[more]
A0A061F374\|A0A061F374_THECC	2.066e-41	59.40	Syntaxin of plants 52, putative isoform 2 OS=Theob...	[more]
A0A7J9L5Y6\|A0A7J9L5Y6_GOSSC	4.773e-41	68.93	Uncharacterized protein OS=Gossypium schwendimanii...	[more]
A0A1U8IQC5\|A0A1U8IQC5_GOSHI	1.001e-40	68.93	uncharacterized protein LOC107899148 OS=Gossypium ...	[more]

BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..136

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:29838512..29842433-
coding sequence from alignment at chr3:29838512..29842433-

mRNA sequence

>CMJ_chr3_011700.3_cmj_v1 ID=CMJ_chr3_011700.3_cmj_v1; Name=CMJ_chr3_011700.3; organism=Citrus maxima; type=mRNA; length=411bp
ATGGCCAATAAGCAGTATCTAGTTGTAGATGCATGGTTAAGAGAAGCTCA
AGAGGCTGAAAAGTTGGTGGAAGAGATAGATGGCAGAGTCAAGAACAAAA
GCCAAGAACAGCAGCAACAAAGTCTCAGCGATGACATAATTGCTAGATCT
AAGCTTTTGGAAGTTGGAGTAAAGCTTGATCGCCTTGAATCACTTCTTCG
TAACCCACCTTCAAAACCCATCTTAACGAATGAAGATTTGGAATCGCGAT
GGAAAATGCTGTCGGATATCCAGCTGAGAATGAAAGCACTTGCCGTCAGA
CTCTATGCAATGCCATATCCGATGCCAAAGAGGCAAGGAGGGTTACCTGC
TGCAGATACCAGGGAAACAGATATAAATGCTGACAGCTATGACCAAGGTA
CCACTCTATAG

protein sequence of CMJ_chr3_011700.3_cmj_v1

>CMJ_chr3_011700.3_cmj_v1 ID=CMJ_chr3_011700.3_cmj_v1; Name=CMJ_chr3_011700.3_cmj_v1; organism=Citrus maxima; type=polypeptide; length=137bp
MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARS
KLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVR
LYAMPYPMPKRQGGLPAADTRETDINADSYDQGTTL*

mRNA from alignment at chr3:29838512..29842433-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=3922bp; location=Sequence derived from: chr3:29838512..29842433- (Citrus maxima
CGATTACAAATTCTTAGCAAATTTTAAGTTGAATTTGCTTCTCATGTGCA
AAATGACTCCATCCCACACGATGAAGGCTAAAGAACAAAATGAAAAAATC
ATTTTCATTGCCGAATCTATTAGCAGCTGGAAATTAGTTATGGTAACTGC
ACATTAAAATATCATACCACAAATATGTCTTGAGGATTTTACAGCTTAAG
AAACTCCTTAATATGTATGCATGTGTGTGTGTGTGTATATACATATAAAT
CGAAATAATTAATAATTAGTTACTGGACATTAATTTATGTAGCAAGCACA
ACAGAGACAGAGATTCATGCAACAACTGTTGTTTGTTTGTTTGCGCTTTG
TTCATTTATCTTACAAGTACAGAGTCAGACAGTGAGTTCTGTTTTGTGAT
GGCCAATAAGCAGTATCTAGTTGTAGATGCATGGTTAAGAGAAGCTCAAG
AGGCTGAAAAGTTGGTGGAAGAGATAGATGGCAGAGTCAAGAACAAAAGC
CAAGAACAGCAGCAACAAAGTCTCAGCGATGACATAATTGCTAGATCTAA
GCTTTTGGAAGTTGGAGTAAAGCTTGATCGCCTTGAATCACTTCTTCGTA
ACCCACCTTCAAAACCCATCTTGTATGTTCCTTATTTTGATTGATTTTGT
TTTTTTTTTTGTTTCACTTGGTGAGTGTTAAAATTAATTTGTTTGTTTTA
GTTTCTATTAGTCTCTGCATCATGGTTTTGGTGCTGAATTTTTGTTAGAT
TAGACAGAGATTGTTTATTATGATAATTGATTCTGAACAGAAAGGGGATT
CTTGATTTCGTTTTGTATGAATCCCGATCTTGTGTTGAAGTTCATCTGTT
TATGGACCAGAATGCATTGCATTTAGATGGTGTTTGCAATTGCATAGTGA
TATTGCTTGGATAGTAATCTGGTGTTGCAGTGCATTTACAGAACGAATGA
AGATTTGGAATCGCGATGGAAAATGCTGTCGGATATCCAGCTGAGAATGA
AAGCACTTGCCGTCAGACTCTATGCAATGCCATATCCGATGCCAAAGAGG
TTTGGAACTTGTTGGCATGTTCTTATTCATCATATGCTTCTTGAAAACTA
GCTGAGCCAAGTACTGTGTTATGGCTGATATATGCTTCTTGTAAGGTGTA
TCATCTAACCGCGGAAATTTTGTTTTTGTCCATTCTACGTAGCTTTTATG
ACAGTACGAAATTGGCATGAAAGAAACCAAAATTTTTACTGCCTTATGTA
TGGGATGCAAATGGTGAAAATATGATACAACTTTTGACAGAAGCTTAAAT
CTAGTCCTGAATTTCTACCTTCTATATTACTGCTATATATTACAAATCCT
CGCTTGGTTTTTCACCATTTTGCGGTTATCATCAAGAATCAAAGCCAGGA
CTTCGACGCGAAAGTGTCATTCTATTATGATTAGGCTGGCATTTCACCAT
GGTTGGTGTAATTAGTATTCATGCTGTGTGATTGGATGTGAAAGATCTTA
GCATTTGCATCTCTACTCTTTTTAGGCAAGGAGGGTTACCTGCTGCAGAT
ACCAGGGAAACAGATATAAATGCTGACAGCTATGACCAAGGTACCACTCT
ATAGTCACAACAGTTACGGATACAAATATTCTATCAAATGAATTGCAGCC
TATGTGAGAAAAATACATAGAGCATCAAGAGGGTTACTTTTCTGGAAAGA
ACATAAGGCATGTAGAAGGGGCTTAGATCCTGTAATCATTCCCTTCATAA
GTACACAATGCCCATTAATTCACTTCTGTGTTGCTAAAGAAAAGAGAAAG
ACTTGAAATTCTTATAAAGTGGTAAAGAGCTTGCTGTGTTGTGCTGCAGG
TCAAATAAGGGCCTCATTCGCCAAAGATGAGTCAGAGCTGCTGCAACCTC
TTGTGGTAAGTCTCTGAAGCTAAGCTGCTTAAGTTGTTGAATGTAAAATT
GTTACTGTAAGTCATCCGACCATCCCAAATGATGTTTCTGCCCCATGCAA
TCAGAAGATGCTACCCAAAGCCATATGCAGGCATTGAGTTTAGATATAAC
TGAACTATTTTATCACTCAAGCATATTCCTGACTTCCATCTTTTTGACCT
TATTTGATTGAATGAGCAGGCCATACGACGAAGTTCTTTCATTTCAATGA
CTTTGCTATGGAAGATTTGCTGGACCATTGGCATAATTCTTGGAGCCGCT
GCATTTCTGTTTATCTTGTTTATCCTCTGTGCAGTCATATAAATGCATAC
TCAGCCTATTATTATTACATGTTTAATTCCCATTGTAAAGTTCCATTATT
GAATCCTAGTCTACTATAAATACCCTGCCATGTGTTTTGAGCCAATTTTG
TGGAGAGTGATTTTGTAAAGATTGTTTACTGAATTTTGGGGTCCTTTTTC
TGCTGGGAAAGATTCACCATTGTCAAAAAAAATGGCACCTTACATTTCTT
TTTCAAAGTGACTCTGAAACACAAGTGGGATGAGTTGTACCGGTTTAACA
AACTCTATCAGATTAATGTAATTTCTGGTAAGAGCTACAATAGCTTTTTA
GTTTTTACCTCAAATGTAACTCTACGTATTGAATAACCTTTACACTGAGG
CTGTAGCTCATCATTATCAATCAGATTTCTTGTTGCCTTATTTTATGCAA
CTTTTCATCTCATAGTCTGGCATGAACTTCACATTTCCCCACCGACGAAA
ATAAATCCCATTCTGTTTAGATCATAGAACAGAGATGGACCACAAATATA
AAACAAACAACAATCATGGTACTGTCAATCAAATGATACAATAATCTGAA
ATTGTAGCTTGATGTACAAAGGCAGCAGAAAATGTAGGAGAGCAATAAAT
ACTTAGAAGAGTACATACAAGTATTGTTACTGTCTGAAGAGGGTTCCCTC
TTACACTTGTAAAAGGACAGAAAATAACATGACACCATAAACTAAAATAG
TTTAAACAACCTTTCGGCTGCAAATAATTGAAATGCTGCTACAAATAGTA
ATCTGTAATTCACCACTGTCTAAGCAAAGCAACAACAGCAACAGTTATTC
TCCCTGCTCTCTATATTCTTGTTCTTTCACCTACCATGAAGCACTTTCTT
CCCTAATATTTCAAATGGGGTTGCTGCAATCCCTCTTCTCTCCATTGAAG
AAGCTTTGGTTTCGCCTGCATTCGACTCAGAGAAAGAGTACTTAATTGCG
CCCTACAACTTATGATTGATTTCAACTGTCTTCCTGTTTTGATTGTTCAA
AATGTATTTGTTGATGCATTGCATGACATATATACAAAATGCATCATCAT
TTGCAGCTTGTGCATATTTCACCAATGTGTTTTAGTTTCAGCTTGTGAAA
TCTTTGCCTTCTTTCTCTTTTCGGCCAAATTTTTGATCATCTGTTTTGCG
ATTTTTCAGATAAAGGGATATACATTTTGTATGATGATGTGAAATCTTGC
CAATGTGAAGATGTGCATGTCCTCTGGTCAATCCTTGTTGAGTCGCAGAT
ACCCTCCATTGCATCACAAAACACTGAAGTCTAGCTTTGAAGATGAAAAT
TAAATTTTCTTGTTACATATGCACATATAATTAATAAATCATTATCTTTC
TTTCTTGTGAAATCTTAGCTACCATGTTAAGCACATTGATGTATTCTAGA
AGGTGTAATGTGTTGAAGTAAGTTGCTTTGTCTATTTTGTGGCAGTTGGG
ACTTGGGGTTGCCATTTTTTTTTTTTTTGAACTTTTCAATGCTGTGATGA
CTGAATAGACATATATATTGTGGAGGTTGATATAATTTGATCTGAAATTG
ATGGCAGAACTTACACATGTTCTTATTGTATCTTTCAAATAATTCTAGGA
TTCATTTCATTGATAGTGATGGTAAGTCAAATTTCAATTCTAGTTTAAGC
AATCAAACAGGAGATGAGAGGC

Coding sequence (CDS) from alignment at chr3:29838512..29842433-

>CMJ_chr3_011700.3_cmj_v1 ID=CMJ_chr3_011700.3_cmj_v1; Name=CMJ_chr3_011700.3; organism=Citrus maxima; type=CDS; length=411bp; location=Sequence derived from: chr3:29838512..29842433- (Citrus maxima
ATGGCCAATAAGCAGTATCTAGTTGTAGATGCATGGTTAAGAGAAGCTCA
AGAGGCTGAAAAGTTGGTGGAAGAGATAGATGGCAGAGTCAAGAACAAAA
GCCAAGAACAGCAGCAACAAAGTCTCAGCGATGACATAATTGCTAGATCT
AAGCTTTTGGAAGTTGGAGTAAAGCTTGATCGCCTTGAATCACTTCTTCG
TAACCCACCTTCAAAACCCATCTTAACGAATGAAGATTTGGAATCGCGAT
GGAAAATGCTGTCGGATATCCAGCTGAGAATGAAAGCACTTGCCGTCAGA
CTCTATGCAATGCCATATCCGATGCCAAAGAGGCAAGGAGGGTTACCTGC
TGCAGATACCAGGGAAACAGATATAAATGCTGACAGCTATGACCAAGGTA
CCACTCTATAG