CMJ_chr3_012190.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_012190.1 vs. ExPASy TrEMBL
Match: A0A2H5MVY7|A0A2H5MVY7_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_273000 PE=4 SV=1) HSP 1 Score: 259.225 bits (661), Expect = 3.414e-86 Identity = 127/137 (92.70%), Postives = 131/137 (95.62%), Query Frame = 0 Query: 1 MPIWPTHNHELLPDMSSLLTMILITNLNSWMILFAEVLGSEYAAIATLAPTLVLVWGFSIRIESASSIFYWAQYAVALSHVCTQSRRAGVLLSLTINVHYFLLSIYIPLLLKFFRGAFRSADLGPAHLFLMENVVAM 137
MPIWPTHNHELLPDMSSLLTM+LITNLNSWMILFAEVLGSEYA IATLAPTLVLVWGFSIRIESASSIFYWAQY V LSH+CTQSRRAGVLLSL+INV+YFLLSIYIPLLL FFRGAFRSADLGPAH FLMEN VAM
Sbjct: 1 MPIWPTHNHELLPDMSSLLTMMLITNLNSWMILFAEVLGSEYAGIATLAPTLVLVWGFSIRIESASSIFYWAQYVVVLSHLCTQSRRAGVLLSLSINVYYFLLSIYIPLLLNFFRGAFRSADLGPAHRFLMENGVAM 137
BLAST of CMJ_chr3_012190.1 vs. ExPASy TrEMBL
Match: V4T9U6|V4T9U6_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002557mg PE=4 SV=1) HSP 1 Score: 259.225 bits (661), Expect = 3.894e-86 Identity = 127/137 (92.70%), Postives = 131/137 (95.62%), Query Frame = 0 Query: 1 MPIWPTHNHELLPDMSSLLTMILITNLNSWMILFAEVLGSEYAAIATLAPTLVLVWGFSIRIESASSIFYWAQYAVALSHVCTQSRRAGVLLSLTINVHYFLLSIYIPLLLKFFRGAFRSADLGPAHLFLMENVVAM 137
MPIWPTHNHELLPDMSSLLTM+LITNLNSWMILFAEVLGSEYA IATLAPTLVLVWGFSIRIESASSIFYWAQY VALSH+CTQSRRAGVLLSL+IN +YFLLSIYIPLLL FFRGAFRSADLGPAH FLMEN VAM
Sbjct: 1 MPIWPTHNHELLPDMSSLLTMMLITNLNSWMILFAEVLGSEYAGIATLAPTLVLVWGFSIRIESASSIFYWAQYVVALSHLCTQSRRAGVLLSLSINAYYFLLSIYIPLLLNFFRGAFRSADLGPAHRFLMENGVAM 137
BLAST of CMJ_chr3_012190.1 vs. ExPASy TrEMBL
Match: A0A2H5PP71|A0A2H5PP71_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_154300 PE=4 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 8.505e-84 Identity = 124/137 (90.51%), Postives = 130/137 (94.89%), Query Frame = 0 Query: 1 MPIWPTHNHELLPDMSSLLTMILITNLNSWMILFAEVLGSEYAAIATLAPTLVLVWGFSIRIESASSIFYWAQYAVALSHVCTQSRRAGVLLSLTINVHYFLLSIYIPLLLKFFRGAFRSADLGPAHLFLMENVVAM 137
MPIWPTHNHELLPDMSSLLTM+LITNLNSWMILFAEVLGSEYA IATLAPTLVLVWGFSIRI+SASSIFYWAQY VALSH+CTQS RAGVLLSL+INV+YF+LSIYIPLLL FFR AFRSADL PAH FLMENVVAM
Sbjct: 1 MPIWPTHNHELLPDMSSLLTMMLITNLNSWMILFAEVLGSEYAGIATLAPTLVLVWGFSIRIDSASSIFYWAQYVVALSHLCTQSTRAGVLLSLSINVYYFILSIYIPLLLNFFRDAFRSADLRPAHRFLMENVVAM 137
BLAST of CMJ_chr3_012190.1 vs. ExPASy TrEMBL
Match: A0A2H5PP45|A0A2H5PP45_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_154330 PE=4 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 1.668e-82 Identity = 123/137 (89.78%), Postives = 129/137 (94.16%), Query Frame = 0 Query: 1 MPIWPTHNHELLPDMSSLLTMILITNLNSWMILFAEVLGSEYAAIATLAPTLVLVWGFSIRIESASSIFYWAQYAVALSHVCTQSRRAGVLLSLTINVHYFLLSIYIPLLLKFFRGAFRSADLGPAHLFLMENVVAM 137
MPIWPTHNHELL +MSSLLTM+L+TNL+SWMILFAEVLGSEYAAIAT APTLVLVWGFSIRIESASSIF WAQY VALSHVCTQSRRAGVLLSL+INV+YFLLSIY P LL FFRGAFRSADLGPAH FLMENVVAM
Sbjct: 1 MPIWPTHNHELLTNMSSLLTMMLMTNLHSWMILFAEVLGSEYAAIATFAPTLVLVWGFSIRIESASSIFDWAQYVVALSHVCTQSRRAGVLLSLSINVYYFLLSIYTPFLLNFFRGAFRSADLGPAHRFLMENVVAM 137 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_012190.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 4 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_012190.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_012190.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_012190.1_cmj_v1 ID=CMJ_chr3_012190.1_cmj_v1; Name=CMJ_chr3_012190.1; organism=Citrus maxima; type=mRNA; length=414bpback to top protein sequence of CMJ_chr3_012190.1_cmj_v1 >CMJ_chr3_012190.1_cmj_v1 ID=CMJ_chr3_012190.1_cmj_v1; Name=CMJ_chr3_012190.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=138bpback to top mRNA from alignment at chr3:30346861..30347415- Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=555bp; location=Sequence derived from: chr3:30346861..30347415- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:30346861..30347415- >CMJ_chr3_012190.1_cmj_v1 ID=CMJ_chr3_012190.1_cmj_v1; Name=CMJ_chr3_012190.1; organism=Citrus maxima; type=CDS; length=414bp; location=Sequence derived from: chr3:30346861..30347415- (Citrus maximaback to top |