Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr3_012820.1.exon1 | CMJ_chr3_012820.1.exon1_cmj_v1 | Citrus maxima | exon |
| CMJ_chr3_012820.1.exon2 | CMJ_chr3_012820.1.exon2_cmj_v1 | Citrus maxima | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr3_012820.1.cds.1 | CMJ_chr3_012820.1.cds.1_cmj_v1 | Citrus maxima | CDS |
| CMJ_chr3_012820.1.cds.2 | CMJ_chr3_012820.1.cds.2_cmj_v1 | Citrus maxima | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr3_012820.1_cmj_v1 | CMJ_chr3_012820.1_cmj_v1 | Citrus maxima | polypeptide |
| CMJ_chr3_012820.1_cmj_v1 | CMJ_chr3_012820.1_cmj_v1-protein | Citrus maxima | polypeptide |
Homology
BLAST of CMJ_chr3_012820.1 vs. ExPASy TrEMBL
Match:
A0A2H5QH08|A0A2H5QH08_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_229360 PE=4 SV=1)
HSP 1 Score: 286.574 bits (732), Expect = 1.073e-96
Identity = 152/191 (79.58%), Postives = 152/191 (79.58%), Query Frame = 0
Query: 1 MDQREKQFQSLNICRRLYNLMKFLARHAHKSIISSSPMPRQIAQAPAGSNEASSKSTQMVQPMAQATPPHEGEQAKTSSNEQDIGGKGASEIERIGASTTVSPTQSEE-KKLEKEATLPPDASQSKAPKKM-------------------------------------VASDVDNNSDSQSESLLSRANAA 153
MDQREKQFQSLNICRRLYNLMKFLARHAHKSIISSS MPRQIAQAPAGSNEASSKSTQMVQPMAQATPPHEGEQAKTSSNEQDIGGKGASEIERIGASTTVSPTQSEE KKLEKEATLPPDASQSKAPKKM VASDVDNNSDSQSESLLSRANAA
Sbjct: 1 MDQREKQFQSLNICRRLYNLMKFLARHAHKSIISSSSMPRQIAQAPAGSNEASSKSTQMVQPMAQATPPHEGEQAKTSSNEQDIGGKGASEIERIGASTTVSPTQSEEKKKLEKEATLPPDASQSKAPKKMVSINENIETIKISKKKSKKKKEQEVPDDSKPLKSILKVASDVDNNSDSQSESLLSRANAA 191
BLAST of CMJ_chr3_012820.1 vs. ExPASy TrEMBL
Match:
A0A067DPS5|A0A067DPS5_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g043415mg PE=4 SV=1)
HSP 1 Score: 286.574 bits (732), Expect = 1.073e-96
Identity = 152/191 (79.58%), Postives = 152/191 (79.58%), Query Frame = 0
Query: 1 MDQREKQFQSLNICRRLYNLMKFLARHAHKSIISSSPMPRQIAQAPAGSNEASSKSTQMVQPMAQATPPHEGEQAKTSSNEQDIGGKGASEIERIGASTTVSPTQSEE-KKLEKEATLPPDASQSKAPKKM-------------------------------------VASDVDNNSDSQSESLLSRANAA 153
MDQREKQFQSLNICRRLYNLMKFLARHAHKSIISSS MPRQIAQAPAGSNEASSKSTQMVQPMAQATPPHEGEQAKTSSNEQDIGGKGASEIERIGASTTVSPTQSEE KKLEKEATLPPDASQSKAPKKM VASDVDNNSDSQSESLLSRANAA
Sbjct: 1 MDQREKQFQSLNICRRLYNLMKFLARHAHKSIISSSSMPRQIAQAPAGSNEASSKSTQMVQPMAQATPPHEGEQAKTSSNEQDIGGKGASEIERIGASTTVSPTQSEEKKKLEKEATLPPDASQSKAPKKMVSINENIETIKISKKKSKKKKEQEVPDDSKPLKSILKVASDVDNNSDSQSESLLSRANAA 191
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 134..153 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 71..85 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 35..153 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 35..64 |
Sequences
The
following sequences are available for this feature:
mRNA sequence
>CMJ_chr3_012820.1_cmj_v1 ID=CMJ_chr3_012820.1_cmj_v1; Name=CMJ_chr3_012820.1; organism=Citrus maxima; type=mRNA; length=462bp
ATGGATCAAAGGGAAAAGCAGTTCCAATCTCTTAACATTTGCCGTAGGCT
CTACAACCTCATGAAATTTTTAGCAAGGCACGCCCACAAGAGTATAATAT
CCAGCAGTCCTATGCCTCGCCAGATAGCTCAGGCACCAGCAGGATCCAAT
GAAGCCAGCTCTAAGAGTACCCAAATGGTGCAACCCATGGCTCAAGCAAC
ACCACCACATGAAGGTGAGCAAGCCAAGACCTCTAGCAATGAACAAGACA
TAGGCGGCAAGGGGGCATCCGAAATCGAACGCATTGGTGCTTCTACCACA
GTTTCTCCTACACAATCTGAAGAGAAGAAACTAGAAAAGGAAGCAACATT
GCCACCAGATGCTTCTCAATCAAAAGCTCCAAAGAAAATGGTGGCTTCAG
ATGTAGACAACAATTCAGACAGCCAAAGCGAAAGCCTTCTTAGTCGTGCA
AATGCTGCATGA
back to topprotein sequence of CMJ_chr3_012820.1_cmj_v1
>CMJ_chr3_012820.1_cmj_v1 ID=CMJ_chr3_012820.1_cmj_v1; Name=CMJ_chr3_012820.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=154bp
MDQREKQFQSLNICRRLYNLMKFLARHAHKSIISSSPMPRQIAQAPAGSN
EASSKSTQMVQPMAQATPPHEGEQAKTSSNEQDIGGKGASEIERIGASTT
VSPTQSEEKKLEKEATLPPDASQSKAPKKMVASDVDNNSDSQSESLLSRA
NAA*
back to topmRNA from alignment at chr3:31257867..31258439+
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=573bp; location=Sequence derived from: chr3:31257867..31258439+ (Citrus maxima
ATGGATCAAAGGGAAAAGCAGTTCCAATCTCTTAACATTTGCCGTAGGCT
CTACAACCTCATGAAATTTTTAGCAAGGCACGCCCACAAGAGTATAATAT
CCAGCAGTCCTATGCCTCGCCAGATAGCTCAGGCACCAGCAGGATCCAAT
GAAGCCAGCTCTAAGAGTACCCAAATGGTGCAACCCATGGCTCAAGCAAC
ACCACCACATGAAGGTGAGCAAGCCAAGACCTCTAGCAATGAACAAGACA
TAGGCGGCAAGGGGGCATCCGAAATCGAACGCATTGGTGCTTCTACCACA
GTTTCTCCTACACAATCTGAAGAGAAGAAACTAGAAAAGGAAGCAACATT
GCCACCAGATGCTTCTCAATCAAAAGCTCCAAAGAAAATGGTTAGCATAA
ATGAAAATATAGAGACAATCAAGATAAGCAAGAAGAAGAGCAAAAAGAAG
AAAGAGCAAGAAGTGCCGGATGATTCAAAACCTTTGAAATCAATTTTAAA
GGTGGCTTCAGATGTAGACAACAATTCAGACAGCCAAAGCGAAAGCCTTC
TTAGTCGTGCAAATGCTGCATGA
back to topCoding sequence (CDS) from alignment at chr3:31257867..31258439+
>CMJ_chr3_012820.1_cmj_v1 ID=CMJ_chr3_012820.1_cmj_v1; Name=CMJ_chr3_012820.1; organism=Citrus maxima; type=CDS; length=462bp; location=Sequence derived from: chr3:31257867..31258439+ (Citrus maxima
ATGGATCAAAGGGAAAAGCAGTTCCAATCTCTTAACATTTGCCGTAGGCT
CTACAACCTCATGAAATTTTTAGCAAGGCACGCCCACAAGAGTATAATAT
CCAGCAGTCCTATGCCTCGCCAGATAGCTCAGGCACCAGCAGGATCCAAT
GAAGCCAGCTCTAAGAGTACCCAAATGGTGCAACCCATGGCTCAAGCAAC
ACCACCACATGAAGGTGAGCAAGCCAAGACCTCTAGCAATGAACAAGACA
TAGGCGGCAAGGGGGCATCCGAAATCGAACGCATTGGTGCTTCTACCACA
GTTTCTCCTACACAATCTGAAGAGAAGAAACTAGAAAAGGAAGCAACATT
GCCACCAGATGCTTCTCAATCAAAAGCTCCAAAGAAAATGGTGGCTTCAG
ATGTAGACAACAATTCAGACAGCCAAAGCGAAAGCCTTCTTAGTCGTGCA
AATGCTGCATGA
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