CMJ_chr3_013540.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_013540.1 vs. ExPASy TrEMBL
Match: A0A2H5Q6B7|A0A2H5Q6B7_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_199490 PE=4 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 5.936e-65 Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 0 Query: 1 MVARTPPKQRKVLAPLNPVLLRETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSV 102
MVARTPPKQRKVLAPLNPVLLRETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMS+
Sbjct: 1 MVARTPPKQRKVLAPLNPVLLRETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSL 102
BLAST of CMJ_chr3_013540.1 vs. ExPASy TrEMBL
Match: A0A067EMM2|A0A067EMM2_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g016763mg PE=4 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 6.473e-65 Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 0 Query: 1 MVARTPPKQRKVLAPLNPVLLRETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSV 102
MVARTPPKQRKVLAPLNPVLLRETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMS+
Sbjct: 1 MVARTPPKQRKVLAPLNPVLLRETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSL 102
BLAST of CMJ_chr3_013540.1 vs. ExPASy TrEMBL
Match: A0A6J5VC11|A0A6J5VC11_PRUAR (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS41082 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 2.214e-56 Identity = 89/123 (72.36%), Postives = 102/123 (82.93%), Query Frame = 0 Query: 1 MVARTPPKQRKVLAPLNPVLLRETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSVTSNASKRNSGRNSTSNSICKE 123
MVARTPPKQRK++APLNPVLLRETVKKVD+CMARLQELQYTV+GGTK+ISGVSLSPRSTRGYLRTSLRCKQE+ RIK + PRKSP GKFPA AGGEW+ MS+ + G ++ +E
Sbjct: 1 MVARTPPKQRKMVAPLNPVLLRETVKKVDRCMARLQELQYTVSGGTKVISGVSLSPRSTRGYLRTSLRCKQETARIKGSAPRKSPVGKFPANAGGEWQRMSLPAMLVGETVGEILQASQFARE 123
BLAST of CMJ_chr3_013540.1 vs. ExPASy TrEMBL
Match: A0A6P5Z693|A0A6P5Z693_DURZI (microtubule-binding protein TANGLED isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111297904 PE=4 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 3.234e-55 Identity = 91/103 (88.35%), Postives = 97/103 (94.17%), Query Frame = 0 Query: 1 MVARTPPKQRK-VLAPLNPVLLRETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSV 102
MVARTPPKQRK V+APLNPVLLRETVKKV+KCMARLQELQYTV GGTK+ISGV+LSPRSTRGYLRTSLRCKQESLR+KNATPRKSP GKFPA AG EWR MS+
Sbjct: 1 MVARTPPKQRKIVVAPLNPVLLRETVKKVEKCMARLQELQYTVAGGTKVISGVNLSPRSTRGYLRTSLRCKQESLRMKNATPRKSPVGKFPATAGDEWRRMSL 103
BLAST of CMJ_chr3_013540.1 vs. ExPASy TrEMBL
Match: A0A061FA17|A0A061FA17_THECC (Cyclin family isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_026562 PE=4 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 5.072e-55 Identity = 91/103 (88.35%), Postives = 97/103 (94.17%), Query Frame = 0 Query: 1 MVARTPPKQRKVL-APLNPVLLRETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSV 102
MVARTPPKQRK++ APLNPVLLRETVKKV++CMARLQELQYTV GGTK+ISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKS GKFPA AGGEWR MS+
Sbjct: 1 MVARTPPKQRKIMVAPLNPVLLRETVKKVEQCMARLQELQYTVAGGTKVISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSLVGKFPASAGGEWRRMSL 103
BLAST of CMJ_chr3_013540.1 vs. ExPASy TrEMBL
Match: A0A0D2PHN9|A0A0D2PHN9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G241800 PE=4 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.235e-54 Identity = 89/103 (86.41%), Postives = 97/103 (94.17%), Query Frame = 0 Query: 1 MVARTPPKQRK-VLAPLNPVLLRETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSV 102
MVARTPPKQRK V+APLNPVLLRETVKKV+KCMARLQELQ TV GG+K+ISGVSLSPRSTRGY+RTSLRCKQESLR+KN+TPRKSP GKFPA AGGEWR MS+
Sbjct: 1 MVARTPPKQRKFVVAPLNPVLLRETVKKVEKCMARLQELQLTVAGGSKVISGVSLSPRSTRGYMRTSLRCKQESLRMKNSTPRKSPVGKFPATAGGEWRRMSL 103
BLAST of CMJ_chr3_013540.1 vs. ExPASy TrEMBL
Match: A0A5D2TZW9|A0A5D2TZW9_GOSMU (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D08G252500v1 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.322e-54 Identity = 89/103 (86.41%), Postives = 97/103 (94.17%), Query Frame = 0 Query: 1 MVARTPPKQRK-VLAPLNPVLLRETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSV 102
MVARTPPKQRK V+APLNPVLLRETVKKV+KCMARLQELQ TV GG+K+ISGVSLSPRSTRGY+RTSLRCKQESLR+KN+TPRKSP GKFPA AGGEWR MS+
Sbjct: 1 MVARTPPKQRKFVVAPLNPVLLRETVKKVEKCMARLQELQLTVAGGSKVISGVSLSPRSTRGYMRTSLRCKQESLRMKNSTPRKSPVGKFPATAGGEWRRMSL 103
BLAST of CMJ_chr3_013540.1 vs. ExPASy TrEMBL
Match: A0A6P3ZNK0|A0A6P3ZNK0_ZIZJJ (microtubule-binding protein TANGLED OS=Ziziphus jujuba OX=326968 GN=LOC107412001 PE=4 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 1.650e-54 Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 0 Query: 1 MVARTPPKQRKVLAPLNPVLLRETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSV 102
MVARTPPK +K++APLNPVLLRETVKKVD+CMARLQELQYTV GGTK++SGVSLSPRSTRGYLRTSLRCKQES+R+KNA PRKSP GKFPA GGEWR MS+
Sbjct: 1 MVARTPPKHKKMVAPLNPVLLRETVKKVDRCMARLQELQYTVAGGTKVVSGVSLSPRSTRGYLRTSLRCKQESIRLKNAAPRKSPVGKFPADTGGEWRRMSL 102
BLAST of CMJ_chr3_013540.1 vs. ExPASy TrEMBL
Match: A0A1R3JWV5|A0A1R3JWV5_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_13475 PE=4 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 1.970e-54 Identity = 89/103 (86.41%), Postives = 97/103 (94.17%), Query Frame = 0 Query: 1 MVARTPPKQRK-VLAPLNPVLLRETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSV 102
MVARTPPKQRK V+APLNP LLRETVKKV+KCMARLQELQYTV GGTK++SGVSLSPRSTRGYL+TSLRCKQESLRIKNATPRKSP GKFP+ AGGEW+ MS+
Sbjct: 1 MVARTPPKQRKIVVAPLNPALLRETVKKVEKCMARLQELQYTVAGGTKVVSGVSLSPRSTRGYLKTSLRCKQESLRIKNATPRKSPVGKFPSTAGGEWKRMSL 103
BLAST of CMJ_chr3_013540.1 vs. ExPASy TrEMBL
Match: A0A1R3GWX0|A0A1R3GWX0_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_22780 PE=4 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 2.562e-54 Identity = 89/103 (86.41%), Postives = 97/103 (94.17%), Query Frame = 0 Query: 1 MVARTPPKQRK-VLAPLNPVLLRETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSV 102
MVARTPPKQRK V+APLNP LLRETVKKV+KCMARLQELQYTV GGTK++SGVSLSPRSTRGYL+TSLRCKQESLRIKNATPRKSP GKFP+ AGGEW+ MS+
Sbjct: 1 MVARTPPKQRKIVVAPLNPALLRETVKKVEKCMARLQELQYTVAGGTKVVSGVSLSPRSTRGYLKTSLRCKQESLRIKNATPRKSPVGKFPSTAGGEWKRMSL 103
BLAST of CMJ_chr3_013540.1 vs. ExPASy Swiss-Prot
Match: TANB_ARATH (Probable microtubule-binding protein TANGLED OS=Arabidopsis thaliana OX=3702 GN=TAN PE=1 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.538e-45 Identity = 76/105 (72.38%), Postives = 89/105 (84.76%), Query Frame = 0 Query: 1 MVARTPPKQRKV---LAPLNPVLLRETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSV 102
MVARTP KQRKV + PLN LL+ET+ KVDKCM RLQELQYT+ GGTK++SGV+LSPRSTR YL+TSLRCKQE+LRIKNAT +KSP GKFPA + G+WR MS+
Sbjct: 1 MVARTPQKQRKVAMVVPPLNSDLLKETINKVDKCMERLQELQYTIAGGTKVVSGVNLSPRSTRIYLKTSLRCKQETLRIKNATNKKSPVGKFPASSPGDWRKMSL 105
BLAST of CMJ_chr3_013540.1 vs. ExPASy Swiss-Prot
Match: TANA_ARATH (Microtubule-binding protein TANGLED OS=Arabidopsis thaliana OX=3702 GN=TAN PE=1 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 3.110e-45 Identity = 76/105 (72.38%), Postives = 89/105 (84.76%), Query Frame = 0 Query: 1 MVARTPPKQRKV---LAPLNPVLLRETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSV 102
MVARTP KQRKV + PLN LL+ET+ KVDKCM RLQELQYT+ GGTK++SGV+LSPRSTR YL+TSLRCKQE+LRIKNAT +KSP GKFPA + G+WR MS+
Sbjct: 1 MVARTPQKQRKVAMVVPPLNSDLLKETINKVDKCMERLQELQYTIAGGTKVVSGVNLSPRSTRIYLKTSLRCKQETLRIKNATNKKSPVGKFPASSPGDWRKMSL 105
BLAST of CMJ_chr3_013540.1 vs. ExPASy Swiss-Prot
Match: TAN1_MAIZE (Microtubule-binding protein TANGLED1 OS=Zea mays OX=4577 GN=TAN1 PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 3.407e-26 Identity = 46/57 (80.70%), Postives = 54/57 (94.74%), Query Frame = 0 Query: 22 RETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQESLRIKN 78
RET+KKVD+CMARLQELQYTV GG K++SGVSLSPRSTRGYLRTSLRCKQE++R++
Sbjct: 30 RETLKKVDRCMARLQELQYTVAGGAKVVSGVSLSPRSTRGYLRTSLRCKQETVRMRG 86
BLAST of CMJ_chr3_013540.1 vs. Araport11
Match: AT3G05330.1 (| cyclin family | Chr3:1519162-1521159 REVERSE LENGTH=444 | 201606) HSP 1 Score: 155.992 bits (393), Expect = 1.574e-46 Identity = 76/105 (72.38%), Postives = 89/105 (84.76%), Query Frame = 0 Query: 1 MVARTPPKQRKV---LAPLNPVLLRETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSV 102
MVARTP KQRKV + PLN LL+ET+ KVDKCM RLQELQYT+ GGTK++SGV+LSPRSTR YL+TSLRCKQE+LRIKNAT +KSP GKFPA + G+WR MS+
Sbjct: 1 MVARTPQKQRKVAMVVPPLNSDLLKETINKVDKCMERLQELQYTIAGGTKVVSGVNLSPRSTRIYLKTSLRCKQETLRIKNATNKKSPVGKFPASSPGDWRKMSL 105 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_013540.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_013540.1 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 3 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_013540.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_013540.1_cmj_v1 ID=CMJ_chr3_013540.1_cmj_v1; Name=CMJ_chr3_013540.1; organism=Citrus maxima; type=mRNA; length=375bpback to top protein sequence of CMJ_chr3_013540.1_cmj_v1 >CMJ_chr3_013540.1_cmj_v1 ID=CMJ_chr3_013540.1_cmj_v1; Name=CMJ_chr3_013540.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=125bpback to top mRNA from alignment at chr3:32442375..32443469- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1095bp; location=Sequence derived from: chr3:32442375..32443469- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:32442375..32443469- >CMJ_chr3_013540.1_cmj_v1 ID=CMJ_chr3_013540.1_cmj_v1; Name=CMJ_chr3_013540.1; organism=Citrus maxima; type=CDS; length=375bp; location=Sequence derived from: chr3:32442375..32443469- (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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