Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CMJ_chr3_013960.1.exon1 CMJ_chr3_013960.1.exon1_cmj_v1 Citrus maxima exon
CMJ_chr3_013960.1.exon2 CMJ_chr3_013960.1.exon2_cmj_v1 Citrus maxima exon
CMJ_chr3_013960.1.exon3 CMJ_chr3_013960.1.exon3_cmj_v1 Citrus maxima exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CMJ_chr3_013960.1.cds.1 CMJ_chr3_013960.1.cds.1_cmj_v1 Citrus maxima CDS
CMJ_chr3_013960.1.cds.2 CMJ_chr3_013960.1.cds.2_cmj_v1 Citrus maxima CDS
CMJ_chr3_013960.1.cds.3 CMJ_chr3_013960.1.cds.3_cmj_v1 Citrus maxima CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
CMJ_chr3_013960.1_cmj_v1 CMJ_chr3_013960.1_cmj_v1 Citrus maxima polypeptide
CMJ_chr3_013960.1_cmj_v1 CMJ_chr3_013960.1_cmj_v1-protein Citrus maxima polypeptide
Homology
BLAST of CMJ_chr3_013960.1 vs. ExPASy TrEMBL
Match:
V4T5G9|V4T5G9_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003931mg PE=4 SV=1)
HSP 1 Score: 157.918 bits (398), Expect = 4.064e-45
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0
Query: 89 LELNRRLVAMSRPWAFNSFSYPRSPEEILRISYGTGNEHVPGRFFPQGGKWKNCKTSKEENLMLQLLCRKEV 160
LELNRRLVAMSRPWAFNSFSYPRSPEEILRISYGTGNEHVPGRFFPQGGKWKNCKTSKEENLMLQLLCRKEV
Sbjct: 174 LELNRRLVAMSRPWAFNSFSYPRSPEEILRISYGTGNEHVPGRFFPQGGKWKNCKTSKEENLMLQLLCRKEV 245
BLAST of CMJ_chr3_013960.1 vs. ExPASy TrEMBL
Match:
A0A067EQV5|A0A067EQV5_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044495mg PE=4 SV=1)
HSP 1 Score: 156.377 bits (394), Expect = 3.436e-44
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0
Query: 89 LELNRRLVAMSRPWAFNSFSYPRSPEEILRISYGTGNEHVPGRFFPQGGKWKNCKTSKEENLMLQLLCRKEV 160
LELNRRLVAMSRPWAFNSFSYPRSPEEILRISYGTGNEHVPGRFFPQGGKWKNCKTSKEENLMLQLLCRKEV
Sbjct: 205 LELNRRLVAMSRPWAFNSFSYPRSPEEILRISYGTGNEHVPGRFFPQGGKWKNCKTSKEENLMLQLLCRKEV 276
BLAST of CMJ_chr3_013960.1 vs. ExPASy TrEMBL
Match:
A0A6N2BDJ6|A0A6N2BDJ6_SOLCI (Uncharacterized protein OS=Solanum chilense OX=4083 GN=EJD97_013525 PE=4 SV=1)
HSP 1 Score: 78.1814 bits (191), Expect = 7.678e-15
Identity = 49/106 (46.23%), Postives = 62/106 (58.49%), Query Frame = 0
Query: 48 GLEANLDNLTRAIITEFGYQEVGHLSLRQGSYHLNLAKTEYLELNRRLVAMSRPWA------FNSFSYPRSPEEILRISYGTGNEHVPGRFFPQGGKWKNCKTSKE 147
G +ANLD LT II EF QEVGHL + G + K E + + L A +R + F S SY R+P EILRI YG+G+EHVPG F+P+G N K +KE
Sbjct: 78 GRKANLDQLTSNIIMEFANQEVGHLRNKLGKCGI---KDEGIYIQPPLGAENRTSSNVLSADFGSLSYERTPAEILRIVYGSGDEHVPGGFYPKGA---NGKIAKE 177
BLAST of CMJ_chr3_013960.1 vs. ExPASy TrEMBL
Match:
A0A3Q7EPQ9|A0A3Q7EPQ9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)
HSP 1 Score: 77.0258 bits (188), Expect = 1.392e-14
Identity = 46/100 (46.00%), Postives = 58/100 (58.00%), Query Frame = 0
Query: 50 EANLDNLTRAIITEFGYQEVGHLSLRQGSYHLNLAKTEYLELNRRLVAMSRPWA------FNSFSYPRSPEEILRISYGTGNEHVPGRFFPQGGKWKNCK 143
+ANLD LT II EF QEVGHL + G + K E + + L A +R + F S SY R+P EILRI YG+G+EHVPG F+P+G K K
Sbjct: 70 KANLDQLTTNIIMEFANQEVGHLRNKLGKCGI---KDEGIYIQPPLGAENRTSSNILSADFGSLSYKRTPAEILRIVYGSGDEHVPGGFYPKGANGKIAK 166
The following BLAST results are available for this feature:
BLAST of CMJ_chr3_013960.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL )
Total hits: 4
50 100 150 200 250 300 350 400 450 Expect = 4.06e-45 / Id = 100.00 Expect = 3.44e-44 / Id = 100.00 Expect = 7.68e-15 / Id = 46.23 Expect = 1.39e-14 / Id = 46.00 Sequence V4T5G9|V4T5G9_CITCL A0A067EQV5|A0A067EQV5_CITSI A0A6N2BDJ6|A0A6N2BDJ6_SOLCI A0A3Q7EPQ9|A0A3Q7EPQ9_SOLLC
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>CMJ_chr3_013960.1_cmj_v1 ID=CMJ_chr3_013960.1_cmj_v1; Name=CMJ_chr3_013960.1; organism=Citrus maxima; type=mRNA; length=483bp ATGCAGAGACGACGTGGACAACCTGCAATTCGCTCAAAGCTTGGAGCATT TAGAAGCAGAGCTCTTTCTGGGGGGAGGATTAGGTTATGGCCTCGACAAG GTTGCTCCATACTTAAGTCTTTGGTGGCCCTCCTCCAATTGGGGTTAGAA GCTAATCTTGATAATCTTACTAGAGCCATCATCACCGAATTTGGATACCA AGAAGTTGGACATCTCAGCTTGCGGCAGGGCTCTTATCACCTGAATCTGG CCAAGACAGAATACTTGGAGCTGAATCGCAGATTGGTAGCAATGTCTCGT CCCTGGGCTTTTAACTCCTTTTCCTATCCAAGATCTCCGGAGGAGATCCT CAGGATCTCTTATGGAACCGGCAATGAGCACGTCCCCGGCAGATTCTTTC CGCAGGGTGGCAAATGGAAGAATTGCAAGACTTCTAAAGAAGAAAATTTA ATGCTTCAGCTTCTCTGTAGAAAAGAAGTTTGA back to top protein sequence of CMJ_chr3_013960.1_cmj_v1
>CMJ_chr3_013960.1_cmj_v1 ID=CMJ_chr3_013960.1_cmj_v1; Name=CMJ_chr3_013960.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=161bp MQRRRGQPAIRSKLGAFRSRALSGGRIRLWPRQGCSILKSLVALLQLGLE ANLDNLTRAIITEFGYQEVGHLSLRQGSYHLNLAKTEYLELNRRLVAMSR PWAFNSFSYPRSPEEILRISYGTGNEHVPGRFFPQGGKWKNCKTSKEENL MLQLLCRKEV* back to top mRNA from alignment at chr3:33090713..33091846+
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=1134bp; location=Sequence derived from: chr3:33090713..33091846+ (Citrus maximaATGCAGAGACGACGTGGACAACCTGCAATTCGCTCAAAGCTTGGAGCATT
TAGAAGCAGAGCTCTTTCTGGGGGGAGGATTAGGTTATGGCCTCGACAAG
GTTGCTCCATACTTAAGTCTTTGGTGGCCCTCCTCCAATTGGGGTTAGAA
GCTAATCTTGATAATCTTACTAGAGCCATCATCACCGAATTTGGATACCA
AGAAGTTGGACATCTCAG GTAAAGTGTGATTACTAAAATAATTATCATAA
TTCAACTATATGGCAATGCTTAGGTGCGGACACGCCCTTTTACAATGCCA
TAAGGTGTGTGCATCTTCGCGAAATTTCTTGCCTTCCGCACCTATTATGA
CTCGGTACTATGTATGTTACAAGCACTAATGTCAATTTTACTACCTTTTA
GCGTGTTCTATGTGATCTGGGGCACTGAAGACTAGTGTTGGAGGGATTCA
AAGGCCATTGATGGATCTGAGTGCAAAATCCTTTTCGCAAAATTAATTGA
TGAAGCATTTGGTTTCCCCCTGGATCCTCCATTCTACCCTTACCGCGACA
GCCTAAGTTATATGGTGGGTTCATAGATGGTGCCGTACGTGGGACTCAAT
GGCTACACTGGTTCTAATCCTTTCCTTTGCGGCTACCTAGCAAAAAGGGT
GGGCACATATCTCACACCTAAGAAAATCTAGTTCATCGAAACTGACATTA
TAACATTACTTTTGGTGCAGCTTGCGGCAGGGCTCTTATCACCTGAATCT
GGCCAAGACAGAATA GTAAGAGAATATCTGTTCGGGAGAGCTGATCAAAT
TGTGAAGCCATACAATTACACAGTTGCACGCGTTTCACAACACGGATTTC
AAATCTAAGAAACCGACTAGGAATGTGCGGGATTAAAGATGAAGGGCTTT
TTGTCCCTCCGCAGCTTGGAGCTGAATCGCAGATTGGTAGCAATGTCTCG
TCCCTGGGCTTTTAACTCCTTTTCCTATCCAAGATCTCCGGAGGAGATCC
TCAGGATCTCTTATGGAACCGGCAATGAGCACGTCCCCGGCAGATTCTTT
CCGCAGGGTGGCAAATGGAAGAATTGCAAGACTTCTAAAGAAGAAAATTT
AATGCTTCAGCTTCTCTGTAGAAAAGAAGTTTGA back to top Coding sequence (CDS) from alignment at chr3:33090713..33091846+
>CMJ_chr3_013960.1_cmj_v1 ID=CMJ_chr3_013960.1_cmj_v1; Name=CMJ_chr3_013960.1; organism=Citrus maxima; type=CDS; length=483bp; location=Sequence derived from: chr3:33090713..33091846+ (Citrus maxima ATGCAGAGACGACGTGGACAACCTGCAATTCGCTCAAAGCTTGGAGCATT TAGAAGCAGAGCTCTTTCTGGGGGGAGGATTAGGTTATGGCCTCGACAAG GTTGCTCCATACTTAAGTCTTTGGTGGCCCTCCTCCAATTGGGGTTAGAA GCTAATCTTGATAATCTTACTAGAGCCATCATCACCGAATTTGGATACCA AGAAGTTGGACATCTCAGCTTGCGGCAGGGCTCTTATCACCTGAATCTGG CCAAGACAGAATACTTGGAGCTGAATCGCAGATTGGTAGCAATGTCTCGT CCCTGGGCTTTTAACTCCTTTTCCTATCCAAGATCTCCGGAGGAGATCCT CAGGATCTCTTATGGAACCGGCAATGAGCACGTCCCCGGCAGATTCTTTC CGCAGGGTGGCAAATGGAAGAATTGCAAGACTTCTAAAGAAGAAAATTTA ATGCTTCAGCTTCTCTGTAGAAAAGAAGTTTGA back to top