CMJ_chr3_014960.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_014960.1 vs. ExPASy TrEMBL
Match: A0A2H5PPU5|A0A2H5PPU5_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_156300 PE=4 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.768e-49 Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0 Query: 1 MCDRKASYGCCSRSNVPSSCSSTPKKETATAPKKEECEHNVKASQVAPALTAHASSAPKTEV-EEEEAAAVSVVKQEESVKVNVGK 85
MCDRKASYGCCSRSNVPSSCSSTPKKETATAPKKEECEHNVKASQVAPALTAHASSAPKTEV EEEEAAAVSVVKQEESVKVNVGK
Sbjct: 1 MCDRKASYGCCSRSNVPSSCSSTPKKETATAPKKEECEHNVKASQVAPALTAHASSAPKTEVEEEEEAAAVSVVKQEESVKVNVGK 86
BLAST of CMJ_chr3_014960.1 vs. ExPASy TrEMBL
Match: V4TAZ2|V4TAZ2_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002986mg PE=4 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.768e-49 Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0 Query: 1 MCDRKASYGCCSRSNVPSSCSSTPKKETATAPKKEECEHNVKASQVAPALTAHASSAPKTEV-EEEEAAAVSVVKQEESVKVNVGK 85
MCDRKASYGCCSRSNVPSSCSSTPKKETATAPKKEECEHNVKASQVAPALTAHASSAPKTEV EEEEAAAVSVVKQEESVKVNVGK
Sbjct: 1 MCDRKASYGCCSRSNVPSSCSSTPKKETATAPKKEECEHNVKASQVAPALTAHASSAPKTEVEEEEEAAAVSVVKQEESVKVNVGK 86
BLAST of CMJ_chr3_014960.1 vs. ExPASy TrEMBL
Match: A0A067GSR6|A0A067GSR6_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g045698mg PE=4 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.768e-49 Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0 Query: 1 MCDRKASYGCCSRSNVPSSCSSTPKKETATAPKKEECEHNVKASQVAPALTAHASSAPKTEV-EEEEAAAVSVVKQEESVKVNVGK 85
MCDRKASYGCCSRSNVPSSCSSTPKKETATAPKKEECEHNVKASQVAPALTAHASSAPKTEV EEEEAAAVSVVKQEESVKVNVGK
Sbjct: 1 MCDRKASYGCCSRSNVPSSCSSTPKKETATAPKKEECEHNVKASQVAPALTAHASSAPKTEVEEEEEAAAVSVVKQEESVKVNVGK 86 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_014960.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 3 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_014960.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_014960.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_014960.1_cmj_v1 ID=CMJ_chr3_014960.1_cmj_v1; Name=CMJ_chr3_014960.1; organism=Citrus maxima; type=mRNA; length=258bpback to top protein sequence of CMJ_chr3_014960.1_cmj_v1 >CMJ_chr3_014960.1_cmj_v1 ID=CMJ_chr3_014960.1_cmj_v1; Name=CMJ_chr3_014960.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=86bpback to top mRNA from alignment at chr3:33695717..33696158- Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=442bp; location=Sequence derived from: chr3:33695717..33696158- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:33695717..33696158- >CMJ_chr3_014960.1_cmj_v1 ID=CMJ_chr3_014960.1_cmj_v1; Name=CMJ_chr3_014960.1; organism=Citrus maxima; type=CDS; length=258bp; location=Sequence derived from: chr3:33695717..33696158- (Citrus maximaback to top |