CMJ_chr3_015000.2
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_015000.2 vs. ExPASy TrEMBL
Match: A0A067GSR2|A0A067GSR2_CITSI (PseudoU_synth_2 domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g018524mg PE=4 SV=1) HSP 1 Score: 717.613 bits (1851), Expect = 0.000e+0 Identity = 346/354 (97.74%), Postives = 349/354 (98.59%), Query Frame = 0 Query: 1 MLPLSSFHPTFTLTPKAVPRFRKTFFSLASMSNPTEPTSQNAPQTQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGAYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEDEENNIVVEKKAVLDADAKKNEILVRVFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFEHPITGCPVMVQAPLPLWATQAPQSSSK 354 MLPLSSFHPTFTLTPKAVPRFRKTFFSLASMSNPTEPTSQNAPQTQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQG YCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQE EENNIVVEKKAVLDADAKKNEILVR FPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSF+HP+TGCPVMVQAPLPLW T+A QSSSK Sbjct: 1 MLPLSSFHPTFTLTPKAVPRFRKTFFSLASMSNPTEPTSQNAPQTQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFDHPVTGCPVMVQAPLPLWGTEALQSSSK 354
BLAST of CMJ_chr3_015000.2 vs. ExPASy TrEMBL
Match: V4TAZ7|V4TAZ7_CITCL (PseudoU_synth_2 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10001637mg PE=4 SV=1) HSP 1 Score: 674.855 bits (1740), Expect = 0.000e+0 Identity = 335/354 (94.63%), Postives = 339/354 (95.76%), Query Frame = 0 Query: 1 MLPLSSFHPTFTLTPKAVPRFRKTFFSLASMSNPTEPTSQNAPQTQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGAYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEDEENNIVVEKKAVLDADAKKNEILVRVFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFEHPITGCPVMVQAPLPLWATQAPQSSSK 354 M LSSFHPTFT PK VPRFRKTFFSLASM NPTEPT +NAPQ QQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEW VAVNKPQG YCESVLASVPC LAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQE EENNIVVEKKAVLDADAKKNEILVR FPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSF+HP+TGCPVMVQAPLPLW T+A QSSSK Sbjct: 4 MPSLSSFHPTFTFAPKGVPRFRKTFFSLASMLNPTEPTCENAPQIQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWFVAVNKPQGVYCESVLASVPCFLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFDHPVTGCPVMVQAPLPLWGTEALQSSSK 357
BLAST of CMJ_chr3_015000.2 vs. ExPASy TrEMBL
Match: A0A6P9EWG5|A0A6P9EWG5_JUGRE (RNA pseudouridine synthase 1-like OS=Juglans regia OX=51240 GN=LOC109011020 PE=4 SV=1) HSP 1 Score: 504.982 bits (1299), Expect = 4.798e-177 Identity = 259/341 (75.95%), Postives = 292/341 (85.63%), Query Frame = 0 Query: 20 RFRKTFFSLA-------SMSN---PTEPTSQNAPQTQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGAYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEDEENNIVVEKKAVLDADAKKNEILVRVFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFEHPITGCPVMVQAPLPLWATQAPQ 350 RF K F L+ +MSN PT+PTS N QT QNYP PLSPPLP ISK +EL RA SASSKSSL+ LSR+ V+YEDEWL+AVNKP+G YCESVLASVP LL D+AES GRLSEGTK+ ELHLANRLDRDTSGVM+ITKSHKVASKLV+AFT+HKV+KTYIA C+GPAPKW++ITI SGHGRSKFG WRVYAASDVGR+LPGGSVVRDM TSFEVLS+NG+GSFKEPSE ++DEEN IVVE++AV+D+ KK+EILVR +PRSGRTHQIRLHCQYLGISIRGDVKYEGVYEW G+ YDGHELHAESLSFEHP+TG P+M QAPLPLW +QA Q Sbjct: 19 RFPKPLFPLSCVTTAAPAMSNQPDPTKPTSVNTLQTPQNYPVPLSPPLPPISKSVELRRAESASSKSSLFALSRTHVVYEDEWLIAVNKPKGIYCESVLASVPQLLC-DAAES-GGRLSEGTKIKSPELHLANRLDRDTSGVMLITKSHKVASKLVQAFTNHKVTKTYIAHCVGPAPKWEKITIKSGHGRSKFGVWRVYAASDVGRMLPGGSVVRDMETSFEVLSINGQGSFKEPSEFRKDEENTIVVEERAVIDSGIKKDEILVRAYPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWKGRTYDGHELHAESLSFEHPVTGLPIMFQAPLPLWPSQALQ 357
BLAST of CMJ_chr3_015000.2 vs. ExPASy TrEMBL
Match: A0A498IL31|A0A498IL31_MALDO (PseudoU_synth_2 domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_036512 PE=4 SV=1) HSP 1 Score: 501.901 bits (1291), Expect = 8.033e-176 Identity = 249/351 (70.94%), Postives = 284/351 (80.91%), Query Frame = 0 Query: 3 PLSSFHPTFTL-TPKAVPRFRKTFFSLASMSNPTEPTSQNAPQTQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGAYCESVLASVPCLLAGDSAESK-SGRLSEG-TKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEDEENNIVVEKKAVLDADAKKNEILVRVFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFEHPITGCPVMVQAPLPLWATQAPQ 350 PL S P L PKA + ++++ + P+SQ A QT NYP PLSPPLPAISK IEL RAMSASSKS L+ LSR+DV+YEDEWL+ VNKPQG YCESVL SVP LL DSAES LS T+ ELHLANRLDRDTSG+M+ITKSHKVA+KLVKAFTDHKVSKTYIA C+G APKW+RIT+ SGHGRSKFGAWRVYAASDVGR LPGGS+VRDM T+FE+LS+NG+GS++EPSE ++DE N +VVE+KAV+D DAKK+EILVR PRSGRTHQIRLHCQYLGISIRGDVKYEGVYEW G YDGHELHAESLS EHP+TG PVM +AP+P WA+QA Q Sbjct: 6 PLLSPQPAMVLYAPKAYVFLSRRRATMSAQHDAANPSSQAALQTPGNYPVPLSPPLPAISKHIELARAMSASSKSGLFSLSRNDVVYEDEWLIVVNKPQGVYCESVLESVPQLLC-DSAESAFEFNLSVAETRTKQPELHLANRLDRDTSGLMIITKSHKVAAKLVKAFTDHKVSKTYIARCVGSAPKWERITLKSGHGRSKFGAWRVYAASDVGRTLPGGSMVRDMETAFEILSINGQGSYREPSEFKKDEANVVVVEEKAVIDGDAKKDEILVRARPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWKGTTYDGHELHAESLSLEHPVTGLPVMFRAPVPSWASQALQ 355
BLAST of CMJ_chr3_015000.2 vs. ExPASy TrEMBL
Match: A0A5D2FQF4|A0A5D2FQF4_GOSDA (PseudoU_synth_2 domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_A08G241700v1 PE=4 SV=1) HSP 1 Score: 496.123 bits (1276), Expect = 1.037e-173 Identity = 246/356 (69.10%), Postives = 285/356 (80.06%), Query Frame = 0 Query: 2 LPLSSFHPT----FTLTPKAV---PRFRKTFFSLASMSNPTEPTSQNAPQTQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGAYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEDEENNIVVEKKAVLDADAKKNEILVRVFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFEHPITGCPVMVQAPLPLWATQAPQ 350 +P S H F +PK + PR R FF + MS+ + + QNYPT LSPPLP+ISKDIEL RAMSASSKSSL+ LSRSD+LYEDEWL+AVNKPQG YC+++LASVP L+ DSA S RL EG + + LELHLANRLDRDTSGVMVITKSHKVAS LVKAFT+HKV KTY+A CIG APK +RITI SGHGRSKFGAWRVYAA DVGR LPGGS+VRDM T+FEVLS+NG+ ++KE SE +DEE++IVVE+KA+ D DA K+EILVR FPRSGRTHQIRLHCQYLG IRGDVKYEGVYEW G+ YD HELHAESL+F+HPITG P+++QAPLPLWA+QA Q Sbjct: 1 MPFFSLHQAQQCFFLYSPKPLSKFPRARTLFFLCSKMSSNS--------NSLQNYPTSLSPPLPSISKDIELARAMSASSKSSLFGLSRSDILYEDEWLIAVNKPQGIYCDTILASVPRFLS-DSAPSD--RLCEGNQASTLELHLANRLDRDTSGVMVITKSHKVASVLVKAFTNHKVQKTYVAFCIGSAPKSERITIKSGHGRSKFGAWRVYAAGDVGRKLPGGSIVRDMETTFEVLSINGQQNYKEQSECVKDEEHSIVVEEKAITDVDANKDEILVRAFPRSGRTHQIRLHCQYLGFPIRGDVKYEGVYEWKGRTYDAHELHAESLTFQHPITGFPLLIQAPLPLWASQALQ 345
BLAST of CMJ_chr3_015000.2 vs. ExPASy TrEMBL
Match: A0A2P5VUQ1|A0A2P5VUQ1_GOSBA (PseudoU_synth_2 domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A08G218500v1 PE=4 SV=1) HSP 1 Score: 496.123 bits (1276), Expect = 1.037e-173 Identity = 246/356 (69.10%), Postives = 285/356 (80.06%), Query Frame = 0 Query: 2 LPLSSFHPT----FTLTPKAV---PRFRKTFFSLASMSNPTEPTSQNAPQTQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGAYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEDEENNIVVEKKAVLDADAKKNEILVRVFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFEHPITGCPVMVQAPLPLWATQAPQ 350 +P S H F +PK + PR R FF + MS+ + + QNYPT LSPPLP+ISKDIEL RAMSASSKSSL+ LSRSD+LYEDEWL+AVNKPQG YC+++LASVP L+ DSA S RL EG + + LELHLANRLDRDTSGVMVITKSHKVAS LVKAFT+HKV KTY+A CIG APK +RITI SGHGRSKFGAWRVYAA DVGR LPGGS+VRDM T+FEVLS+NG+ ++KE SE +DEE++IVVE+KA+ D DA K+EILVR FPRSGRTHQIRLHCQYLG IRGDVKYEGVYEW G+ YD HELHAESL+F+HPITG P+++QAPLPLWA+QA Q Sbjct: 1 MPFFSLHQAQQCFFLYSPKPLSKFPRARTLFFLCSKMSSNS--------NSLQNYPTSLSPPLPSISKDIELARAMSASSKSSLFGLSRSDILYEDEWLIAVNKPQGIYCDTILASVPRFLS-DSAPSD--RLCEGNQASTLELHLANRLDRDTSGVMVITKSHKVASVLVKAFTNHKVQKTYVAFCIGSAPKSERITIKSGHGRSKFGAWRVYAAGDVGRKLPGGSIVRDMETTFEVLSINGQQNYKEQSECVKDEEHSIVVEEKAITDVDANKDEILVRAFPRSGRTHQIRLHCQYLGFPIRGDVKYEGVYEWKGRTYDAHELHAESLTFQHPITGFPLLIQAPLPLWASQALQ 345
BLAST of CMJ_chr3_015000.2 vs. ExPASy TrEMBL
Match: A0A540LZ21|A0A540LZ21_MALBA (PseudoU_synth_2 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_022597 PE=4 SV=1) HSP 1 Score: 493.812 bits (1270), Expect = 3.059e-173 Identity = 239/323 (73.99%), Postives = 272/323 (84.21%), Query Frame = 0 Query: 28 LASMSNPTEPTSQNAPQTQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGAYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEDEENNIVVEKKAVLDADAKKNEILVRVFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFEHPITGCPVMVQAPLPLWATQAPQ 350 +++ + P+SQ+A QT NYP PLS PLPAISK IEL RAMSASSKS L+ LSR+DV+YEDEWL+ VNKPQG YCESVL SVP LL DSAES + T+ ELHLANRLDRDTSG+M+ITKSHKVA+KLVKAFTDHKVSKTYIA C+G APKW+RIT+ SGHGRSKFGAWRVYAASDVGR LPGGS+VRDM TSFE+LS+NG+GS++EPSE ++DE N VVE+KAV+D DAKK+EILVR PRSGRTHQIRLHCQYLGISIRGDVKYEGVYEW G YDGHELHAESLS EHP+TG PVM +AP+P WA+QA Q Sbjct: 1 MSAQHDAANPSSQDALQTPGNYPVPLSQPLPAISKHIELARAMSASSKSGLFSLSRNDVVYEDEWLIVVNKPQGVYCESVLESVPQLLC-DSAESVAE-----TRTKQPELHLANRLDRDTSGLMIITKSHKVAAKLVKAFTDHKVSKTYIARCVGSAPKWERITLKSGHGRSKFGAWRVYAASDVGRTLPGGSMVRDMETSFEILSINGQGSYREPSEFKKDEANVEVVEEKAVIDGDAKKDEILVRSRPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWKGTTYDGHELHAESLSLEHPVTGLPVMFRAPVPSWASQALQ 317
BLAST of CMJ_chr3_015000.2 vs. ExPASy TrEMBL
Match: A0A5N6QTD6|A0A5N6QTD6_9ROSI (PseudoU_synth_2 domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_006696 PE=4 SV=1) HSP 1 Score: 491.886 bits (1265), Expect = 5.090e-172 Identity = 248/329 (75.38%), Postives = 281/329 (85.41%), Query Frame = 0 Query: 25 FFSLASMSNP---TEPTSQNAPQTQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGAYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEDEENNIVVEKKAVLDADAKKNEILVRVFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFEHPITGCPVMVQAPLPLWATQAPQ 350 +F+ A+MSNP T+PTSQN Q QNYP PLSPPLP ISK+IEL RAMSASSKSSL+ L + VLY DEWL+AVNKPQG YCE+VL+SVP LL DSA+S EGTK ELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKV+KTYIALC+GPAP+W++I+I SGHGRSKFG WRVYAASDVGR LPGGS+V+DM TSFEVLS+NG GSFKE SE ++DEEN IV E+KAV ++D KK++IL+R +PRSGRTHQIRLHCQYLGISIRGDVKYEG+YEW G YDGHELHAESLSFEHP+TG P+M QAPLPLWA+QA Q Sbjct: 26 YFTTATMSNPADPTKPTSQNTLQNPQNYPVPLSPPLPPISKNIELARAMSASSKSSLFTLLPTHVLYHDEWLIAVNKPQGVYCENVLSSVPQLLC-DSADS------EGTKATFPELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVTKTYIALCVGPAPRWEKISIKSGHGRSKFGVWRVYAASDVGRTLPGGSLVKDMETSFEVLSINGRGSFKELSEFRKDEENTIVAEEKAVPESDVKKDKILIRAYPRSGRTHQIRLHCQYLGISIRGDVKYEGIYEWKGIIYDGHELHAESLSFEHPVTGLPIMFQAPLPLWASQALQ 347
BLAST of CMJ_chr3_015000.2 vs. ExPASy TrEMBL
Match: A0A251NY93|A0A251NY93_PRUPE (PseudoU_synth_2 domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_6G313700 PE=4 SV=1) HSP 1 Score: 486.108 bits (1250), Expect = 1.697e-169 Identity = 259/350 (74.00%), Postives = 288/350 (82.29%), Query Frame = 0 Query: 2 LPLSSFHP-TFTLTPKAVPRFRKTFFSLASMSNPTEPTSQNAPQTQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGAYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEDEENNIVVEKKAVLDADAKKNEILVRVFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFEHPITGCPVMVQAPLPLWATQAPQ 350 LPL S P T TPKA ++ +++ + P+SQNA QT QNYP PLSPPLP ISK IEL RAMSASSKSSL+ LSR DV++ED+WL+ VNKPQG YCESVL SVP LL DSAES +G T N LELHLANRLDRDTSG+MVITKSHKVASKLVKAFTDHK+SKTYIA CIG APKW+RIT+ SGHGRSKFGAWRVYAASDVGR LPGGS+VRDM TSFEVLS+NG+GS KEPSE ++DE N IVV++KAV+D D KK+EILVR PRSGRTHQIRLHCQYLGISIRGDVKYEGVYEW G+ YDGHELHAESLSFEHPITG PVM QAP+P WA+QA Q Sbjct: 22 LPLFSLQPATLFFTPKAFVFLSRSSITMSVQFDAINPSSQNALQTSQNYPVPLSPPLPPISKHIELARAMSASSKSSLFSLSRDDVVFEDQWLIVVNKPQGVYCESVLESVPQLLC-DSAESVAG-----TPANQLELHLANRLDRDTSGLMVITKSHKVASKLVKAFTDHKISKTYIARCIGSAPKWERITLKSGHGRSKFGAWRVYAASDVGRTLPGGSMVRDMETSFEVLSINGQGSLKEPSEFKKDEANTIVVQEKAVIDKDTKKDEILVRARPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWKGRTYDGHELHAESLSFEHPITGLPVMFQAPVPSWASQALQ 365
BLAST of CMJ_chr3_015000.2 vs. ExPASy TrEMBL
Match: A0A061F4Q6|A0A061F4Q6_THECC (Pseudouridine synthase family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_026756 PE=4 SV=1) HSP 1 Score: 484.182 bits (1245), Expect = 4.091e-169 Identity = 245/349 (70.20%), Postives = 284/349 (81.38%), Query Frame = 0 Query: 2 LPLSSFHPTFTLTPKAVPRFRKTFFSLASMSNPTEPTSQNAPQTQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGAYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEDEENNIVVEKKAVLDADAKKNEILVRVFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFEHPITGCPVMVQAPLPLWATQAPQ 350 LP SF F PK + +F KT L P P + QNYPTPLSPPLP+ISKDIEL RAM+ASSKSSL++LSRSD+LYEDEWL+AVNKPQG YC+SVLAS+P L+ + S RLS+G + + ELHLANRLDRDTSG+MVITKSHKVA+ LVKAFT+H V KTY+A CIG APK +RITI SGHGRSKFGAWRVYAA DVGR LPGGS+VRDM T+FEVLS+NG+ S+KEPSE +DEE +++VE+KAV+D DA+K+EILVR FPRSGRTHQIRLHCQYLGI IRGDVKYEGVYEW G+RYD HELHAESLSF+HP+TG PVM+QAPLPLWA+QA Q Sbjct: 6 LPQQSF---FLCCPKLLSKFPKTLLFLC-------PKMSTNPNSHQNYPTPLSPPLPSISKDIELARAMTASSKSSLFELSRSDILYEDEWLIAVNKPQGIYCDSVLASIPRFLSDSTV---SDRLSDGNQASPFELHLANRLDRDTSGIMVITKSHKVAAALVKAFTNHMVHKTYVAFCIGSAPKSERITIKSGHGRSKFGAWRVYAAGDVGRKLPGGSIVRDMGTTFEVLSINGQQSYKEPSESVKDEETSVIVEEKAVIDVDAQKDEILVRAFPRSGRTHQIRLHCQYLGIPIRGDVKYEGVYEWKGRRYDAHELHAESLSFQHPVTGFPVMIQAPLPLWASQALQ 341
BLAST of CMJ_chr3_015000.2 vs. ExPASy Swiss-Prot
Match: PUS1_ARATH (RNA pseudouridine synthase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g56345 PE=2 SV=1) HSP 1 Score: 365.925 bits (938), Expect = 2.151e-125 Identity = 196/334 (58.68%), Postives = 236/334 (70.66%), Query Frame = 0 Query: 23 KTFFSLASMSNP--TEP-------TSQNAPQTQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGAYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEDEENNIVVEKKAVLDADA--KKNEILVRVFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFEHPITGCPVMVQAPLPLWA 345 + FFS +N T+P + + NYP P+S P P ISKDIEL RAM ASSKSSL+ L+R D+LYEDE+L+AVNKP+G YCE+VL S P ++ S+E HLANRLDRDTSGVM+ITKSHKVA+KLVKAFT+HK+ K+YIALCIG +P W+R+T+ SGHGRSK GAWRVYAA DVGRVLPGGS VRDM T+FEV+SVN S K S ED + IV E + L ++VR FPRSGRTHQIRLHCQYLGI IRGDVKY GVYEWNG+ ++GHELHAE LS +HP+TG ++++APLP WA Sbjct: 5 RNFFSFTFSANSIITKPYFAIPIKAMEATSELNLNYPKPISAPPPPISKDIELRRAMEASSKSSLFNLTRDDILYEDEYLMAVNKPKGVYCEAVLRSAPQIVLDSSSE----------------YHLANRLDRDTSGVMIITKSHKVAAKLVKAFTEHKIRKSYIALCIGSSPNWRRVTVSSGHGRSKHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVN---SVKNESCELEDVNHVIVAEGERELSCGGDDDDVVVVVRAFPRSGRTHQIRLHCQYLGIPIRGDVKYHGVYEWNGRTFEGHELHAECLSLDHPVTGDSIVIRAPLPYWA 319
BLAST of CMJ_chr3_015000.2 vs. ExPASy Swiss-Prot
Match: PUS1_ORYSJ (RNA pseudouridine synthase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0560500 PE=2 SV=1) HSP 1 Score: 358.992 bits (920), Expect = 2.906e-122 Identity = 184/294 (62.59%), Postives = 219/294 (74.49%), Query Frame = 0 Query: 59 AISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGAYCESVLASVPCLLA--GDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEDEENNIVVEKKA---VLDADAKKNEILVRVFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFEHPITGCPVMVQAPLPLWATQ 347 A SKD+EL RAM+AS++S+ S + V++EDEWL V+KP G YC+++L+++PC A GD E TK NL HLANRLDRDTSG+MVITK +KVA KLVKAFT+HKV KTY+ALCIG P W++I I SGHGRSK GAWRVYA SDVGR LPGGSVVRDM T FEVL +NG+G F+EPS + DE +I V++KA D D K + ILVR +P+SGRTHQIRLHCQYLG IRGDVKY GV EWNG YDGH LHAESLSF HP+TG PV ++PLP WA + Sbjct: 61 AASKDVELRRAMTASARSA--AYSSAPVVFEDEWLAVVDKPAGVYCDALLSALPCSAATLGD----------EATKPNL---HLANRLDRDTSGLMVITKCNKVAGKLVKAFTEHKVKKTYLALCIGYPPAWEKIKICSGHGRSKHGAWRVYAMSDVGRSLPGGSVVRDMSTRFEVLGINGKGQFREPSNFEVDETESITVQEKAADLTSDGDEKNSIILVRAYPQSGRTHQIRLHCQYLGFPIRGDVKYSGVIEWNGVDYDGHALHAESLSFVHPVTGLPVTFRSPLPSWANE 339
BLAST of CMJ_chr3_015000.2 vs. ExPASy Swiss-Prot
Match: RLUC_YERPE (Ribosomal large subunit pseudouridine synthase C OS=Yersinia pestis OX=632 GN=rluC PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.093e-13 Identity = 71/261 (27.20%), Postives = 112/261 (42.91%), Query Frame = 0 Query: 86 VLYEDEWLVAVNKPQGAYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFE-VLSVNGEGSFKEPSELQEDEENNIVVEKKAVLDADAKKNEILVRVFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWN----GKRYDGHELHAESLSFEHPITGCPVMVQAPL 341 +L+ED++L+ +NKP G ++ G A R L L +RLDRDTSGV+++ K L + + K Y+AL G W+ + + ++++++ S E V+ V+ EG +PSE + E ++ LV+ P +GRTHQIR+H + G I D +Y G E++ G LHA +L FEHP TG + ++APL Sbjct: 95 ILFEDDYLLVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF----------LELVHRLDRDTSGVLLVAKKRSALRSLHEQLRLKSMQKDYLALV--------------------RGQWQSHCKA------IQAPLLKNIMQSGERVVKVSSEG---KPSETRFKIEERF-------------EHATLVKASPVTGRTHQIRVHALHAGHPIAFDDRY-GYREFDQQLQGTGLHRLFLHAAALRFEHPNTGETMRIEAPL 302
BLAST of CMJ_chr3_015000.2 vs. ExPASy Swiss-Prot
Match: RLUC_HAEIN (Ribosomal large subunit pseudouridine synthase C OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=rluC PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 9.541e-13 Identity = 72/263 (27.38%), Postives = 113/263 (42.97%), Query Frame = 0 Query: 84 SDVLYEDEWLVAVNKPQGAYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWK-RITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFE-VLSVNGEGSFKEPSELQEDEENNIVVEKKAVLDADAKKNEILVRVFPRSGRTHQIRLHCQYLGISIRGDVKY---EGVYEWNGKRYDGHELHAESLSFEHPITGCPVMVQAPL 341 + +L+ED+ L+ +NKP G ++ A R L L +RLDRDTSG+++I K L + V K Y+AL G +W+ I +I S++++ ++S E ++ V+ +G +PSE + +E++ + N LV+ P +GRTHQIR+H QY G I D KY + + N + LHA S+ FEHP G + A L Sbjct: 98 NQILFEDDCLIILNKPSGIAVHGGSGLNFGVIEALRALRPEARF----------LELVHRLDRDTSGILLIAKKRSALRNLHEQLRVKTVQKDYLALVRG---QWQSHIKVIQA------------------------SLLKNELSSGERIVRVSEQG---KPSETR------FSIEERYI-------NATLVKASPVTGRTHQIRVHTQYAGHPIALDDKYGDKDFDKQMNELGLNRLFLHAFSIRFEHPKNGETLRFNASL 307
BLAST of CMJ_chr3_015000.2 vs. Araport11
Match: AT1G56345.1 (| Pseudouridine synthase family protein | Chr1:21093409-21094454 REVERSE LENGTH=322 | 201606) HSP 1 Score: 365.925 bits (938), Expect = 2.201e-126 Identity = 196/334 (58.68%), Postives = 236/334 (70.66%), Query Frame = 0 Query: 23 KTFFSLASMSNP--TEP-------TSQNAPQTQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGAYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEDEENNIVVEKKAVLDADA--KKNEILVRVFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFEHPITGCPVMVQAPLPLWA 345 + FFS +N T+P + + NYP P+S P P ISKDIEL RAM ASSKSSL+ L+R D+LYEDE+L+AVNKP+G YCE+VL S P ++ S+E HLANRLDRDTSGVM+ITKSHKVA+KLVKAFT+HK+ K+YIALCIG +P W+R+T+ SGHGRSK GAWRVYAA DVGRVLPGGS VRDM T+FEV+SVN S K S ED + IV E + L ++VR FPRSGRTHQIRLHCQYLGI IRGDVKY GVYEWNG+ ++GHELHAE LS +HP+TG ++++APLP WA Sbjct: 5 RNFFSFTFSANSIITKPYFAIPIKAMEATSELNLNYPKPISAPPPPISKDIELRRAMEASSKSSLFNLTRDDILYEDEYLMAVNKPKGVYCEAVLRSAPQIVLDSSSE----------------YHLANRLDRDTSGVMIITKSHKVAAKLVKAFTEHKIRKSYIALCIGSSPNWRRVTVSSGHGRSKHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVN---SVKNESCELEDVNHVIVAEGERELSCGGDDDDVVVVVRAFPRSGRTHQIRLHCQYLGIPIRGDVKYHGVYEWNGRTFEGHELHAECLSLDHPVTGDSIVIRAPLPYWA 319
BLAST of CMJ_chr3_015000.2 vs. Araport11
Match: AT1G56345.2 (| Pseudouridine synthase family protein | Chr1:21093477-21094454 REVERSE LENGTH=158 | 201606) HSP 1 Score: 89.7373 bits (221), Expect = 2.308e-21 Identity = 60/131 (45.80%), Postives = 79/131 (60.31%), Query Frame = 0 Query: 23 KTFFSLASMSNP--TEP-------TSQNAPQTQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGAYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRL 144 + FFS +N T+P + + NYP P+S P P ISKDIEL RAM ASSKSSL+ L+R D+LYEDE+L+AVNKP+G YCE+VL S P ++ G E GR+ G +++L L L Sbjct: 5 RNFFSFTFSANSIITKPYFAIPIKAMEATSELNLNYPKPISAPPPPISKDIELRRAMEASSKSSLFNLTRDDILYEDEYLMAVNKPKGVYCEAVLRSAPQIVLGRFREV-GGRIRLGYIVSILGFLLEEML 134 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_015000.2 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_015000.2 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 4 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_015000.2 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_015000.2_cmj_v1 ID=CMJ_chr3_015000.2_cmj_v1; Name=CMJ_chr3_015000.2; organism=Citrus maxima; type=mRNA; length=1065bpback to top protein sequence of CMJ_chr3_015000.2_cmj_v1 >CMJ_chr3_015000.2_cmj_v1 ID=CMJ_chr3_015000.2_cmj_v1; Name=CMJ_chr3_015000.2_cmj_v1; organism=Citrus maxima; type=polypeptide; length=355bpback to top mRNA from alignment at chr3:33707129..33710094- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2966bp; location=Sequence derived from: chr3:33707129..33710094- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:33707129..33710094- >CMJ_chr3_015000.2_cmj_v1 ID=CMJ_chr3_015000.2_cmj_v1; Name=CMJ_chr3_015000.2; organism=Citrus maxima; type=CDS; length=1065bp; location=Sequence derived from: chr3:33707129..33710094- (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|