CMJ_chr3_015190.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Match: A0A067H1T4|A0A067H1T4_CITSI (FBA_1 domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g048458mg PE=4 SV=1) HSP 1 Score: 322.783 bits (826), Expect = 3.813e-107 Identity = 164/240 (68.33%), Postives = 183/240 (76.25%), Query Frame = 0 Query: 9 FVWKKEMKGSFATFAIIGFGYGHRTGDFKILLTVHAREVASEQLHREHNEIQVHSLKN-----IQPNIPCMPCLSSNSTVHLSGAQRWLAVRKERNGTDKKII--------------------------REISVGVLEKSIALFVSSHSEDSRTGLGICNVYVMMENIGSVEHWINLLTVDLRAQFAWQYLGFRANGEVMLINDDGDLVLCDHKTQEIVQFGSSNWVANAVTYTESLVSP 217 F+W+KEMKGSFATFAI GFGY HRT DFKILL VHAREVASEQ RE ++IQV+SLKN IQPN+PC+PCLSSNSTVHL+GA W+A+RKE +GT+K II RE S+G+LEKSIALFVS H+ED+ GLGIC+VYVM ENI VEHWINL TVDLRAQFAWQYLGF AN EVML NDDG+LVL DHKTQE+VQ SSNWVANAV YTESLVSP Sbjct: 148 FIWEKEMKGSFATFAITGFGYDHRTSDFKILLIVHAREVASEQFRREFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENI-EVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDGELVLYDHKTQEVVQCESSNWVANAVIYTESLVSP 386
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Match: A0A2H5PPR7|A0A2H5PPR7_CITUN (F-box domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_156100 PE=4 SV=1) HSP 1 Score: 321.627 bits (823), Expect = 1.086e-106 Identity = 163/240 (67.92%), Postives = 183/240 (76.25%), Query Frame = 0 Query: 9 FVWKKEMKGSFATFAIIGFGYGHRTGDFKILLTVHAREVASEQLHREHNEIQVHSLKN-----IQPNIPCMPCLSSNSTVHLSGAQRWLAVRKERNGTDKKII--------------------------REISVGVLEKSIALFVSSHSEDSRTGLGICNVYVMMENIGSVEHWINLLTVDLRAQFAWQYLGFRANGEVMLINDDGDLVLCDHKTQEIVQFGSSNWVANAVTYTESLVSP 217 F+W+KEMKGSFATFAI GFGY HRT DFKILL VHAREVASEQ RE ++IQV+SLKN IQPN+PC+PCLSSNSTVHL+GA W+A+RKE +GT+K II RE S+G+LEKSIALFVS H+ED+ GLGIC+VYVM ENI VEHWINL TVDLRAQFAWQYLGF AN EVML NDDG+LVL DHKTQE+VQ SSNWVANAV YT+SLVSP Sbjct: 148 FIWEKEMKGSFATFAITGFGYDHRTSDFKILLIVHAREVASEQFRREFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENI-EVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDGELVLYDHKTQEVVQCESSNWVANAVIYTQSLVSP 386
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Match: A0A2H5PPR6|A0A2H5PPR6_CITUN (F-box domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_156110 PE=4 SV=1) HSP 1 Score: 291.197 bits (744), Expect = 1.211e-94 Identity = 147/220 (66.82%), Postives = 166/220 (75.45%), Query Frame = 0 Query: 9 FVWKKEMKGSFATFAIIGFGYGHRTGDFKILLTVHAREVASEQLHREHNEIQVHSLKN-----IQPNIPCMPCLSSNSTVHLSGAQRWLAVRKERNGTDKKII--------------------------REISVGVLEKSIALFVSSHSEDSRTGLGICNVYVMMENIGSVEHWINLLTVDLRAQFAWQYLGFRANGEVMLINDDGDLVLCDHKTQEIVQ 197 F+W+KEMKGSFATFAI GFGY HRT DFKILL VHAREVASEQ RE ++IQV+SLKN IQPN+PC+PCLSSNSTVHL+GA W+A+RKE +GT+K II RE S+G+LEKSIALFVS H+ED+ GLGIC+VYVM ENI VEHWINL TVDLRAQFAWQYLGF AN EVML NDDG+LVL DHKTQE+VQ Sbjct: 148 FIWEKEMKGSFATFAITGFGYDHRTSDFKILLIVHAREVASEQFRREFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENI-EVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDGELVLYDHKTQEVVQ 366
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Match: V4T0Z6|V4T0Z6_CITCL (FBA_1 domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v100035151mg PE=4 SV=1) HSP 1 Score: 244.202 bits (622), Expect = 6.370e-77 Identity = 130/209 (62.20%), Postives = 147/209 (70.33%), Query Frame = 0 Query: 9 FVWKKEMKGSFATFAIIGFGYGHRTGDFKILLTVHAREVASEQLHREHNEIQVHSLKN-----IQPNIPCMPCLSSNSTVHLSGAQRWLAVRKERNGTDKKII--------------------------REISVGVLEKSIALFVSSHSEDSRTGLGICNVYVMMENIGSVEHWINLLTVDLRAQFAWQYLGFRANGEVMLINDDGDLV 186 F W+KE S AT FGY HRT DFKILL VHAREVASEQ RE ++IQV+SLKN IQPN+PC+PCLSSNSTVHL+GA W+A+RKE +GT+K II RE S+G+LEKSIALFVS H+ED+ GLGIC+VYVM ENI VEHWINL TVDLRAQFAWQYLGF AN EVML NDDG+LV Sbjct: 126 FDWEKEQYRSSAT---ARFGYDHRTSDFKILLIVHAREVASEQFRREFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENI-EVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDGELV 330
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Match: A0A2H5MXK5|A0A2H5MXK5_CITUN (FBA_1 domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_283900 PE=4 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 1.196e-47 Identity = 100/184 (54.35%), Postives = 112/184 (60.87%), Query Frame = 0 Query: 15 MKGSFATFAIIGFGYGHRTGDFKILLTVHAREVASEQLHREHNEIQVHSLKN-----IQPNIPCMPCLSSNSTVHLSGAQRWLAVRKERNGTDKKIIREISVG--VLEKSIALFVSSHSEDSRTGLGICNVYVMMENIGSVEHWINLLTVDLRAQFAWQYLGFRANGEVMLINDDGDLVLCDHK 191 MKGSF TFAI GFGY HRT KILL RE+NEIQV+SL N +Q NIP +P LSSNSTVHL+GA WLAVR+E +GTDK II G A ++ +R GLG CNV VM ENIG VEHWINL TVDLRAQF AN EVM ND G+LVL D + Sbjct: 1 MKGSFTTFAIPGFGYDHRTSALKILLNCP----------REYNEIQVYSLTNNCWRRVQHNIPSIPFLSSNSTVHLNGAVHWLAVRRESDGTDKHIIMSFDFGDETFRDREATDNLQSTDYNRAGLGSCNVCVMEENIG-VEHWINLFTVDLRAQFG-------ANDEVMQRNDAGELVLYDKQ 166
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Match: A0A067GPL8|A0A067GPL8_CITSI (FBA_1 domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g046250mg PE=4 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 3.453e-46 Identity = 99/182 (54.40%), Postives = 110/182 (60.44%), Query Frame = 0 Query: 15 MKGSFATFAIIGFGYGHRTGDFKILLTVHAREVASEQLHREHNEIQVHSLKN-----IQPNIPCMPCLSSNSTVHLSGAQRWLAVRKERNGTDKKIIREISVG--VLEKSIALFVSSHSEDSRTGLGICNVYVMMENIGSVEHWINLLTVDLRAQFAWQYLGFRANGEVMLINDDGDLVLCD 189 MK SF TFAI GFGY HRT KILL RE+NEIQV+SL N +Q NIP +P LSSNSTVHL+GA WLAVR+E +GTDK II G A ++ +R GLG CNV VM ENIG VEHWINL TVDLRAQF AN EVM ND G+LVL D Sbjct: 1 MKVSFTTFAIPGFGYDHRTSALKILLNCP----------REYNEIQVYSLTNNCWRRVQHNIPSIPFLSSNSTVHLNGAVHWLAVRRESDGTDKHIIMSFDFGDETFRDREATDNLQSTDYNRAGLGSCNVCVMEENIG-VEHWINLFTVDLRAQFG-------ANDEVMQRNDAGELVLYD 164 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 6 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_015190.1_cmj_v1 ID=CMJ_chr3_015190.1_cmj_v1; Name=CMJ_chr3_015190.1; organism=Citrus maxima; type=mRNA; length=654bpback to top protein sequence of CMJ_chr3_015190.1_cmj_v1 >CMJ_chr3_015190.1_cmj_v1 ID=CMJ_chr3_015190.1_cmj_v1; Name=CMJ_chr3_015190.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=218bpback to top mRNA from alignment at chr3:33848577..33849985- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1409bp; location=Sequence derived from: chr3:33848577..33849985- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:33848577..33849985- >CMJ_chr3_015190.1_cmj_v1 ID=CMJ_chr3_015190.1_cmj_v1; Name=CMJ_chr3_015190.1; organism=Citrus maxima; type=CDS; length=654bp; location=Sequence derived from: chr3:33848577..33849985- (Citrus maximaback to top |