CMJ_chr3_015290.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_015290.1 vs. ExPASy TrEMBL
Match: A0A2H5PPT0|A0A2H5PPT0_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_156020 PE=4 SV=1) HSP 1 Score: 401.364 bits (1030), Expect = 2.376e-141 Identity = 196/198 (98.99%), Postives = 197/198 (99.49%), Query Frame = 0 Query: 1 MCIYELEIKDVKFKVSVIDDADVIDKKISELSGMLFKMRRVVGFDVKFNSQTRIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGVDKKIASIHGKTGYPRNCDTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGIDYNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLLN 198
MCIYELEIKDVKFKVSVIDDADVIDKKISELSGMLFKMRRVVGFDVKFNSQTRIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGVDKK ASIHGKTGYPRNCDTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGID+NSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLLN
Sbjct: 1 MCIYELEIKDVKFKVSVIDDADVIDKKISELSGMLFKMRRVVGFDVKFNSQTRIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGVDKKTASIHGKTGYPRNCDTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGIDHNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLLN 198
BLAST of CMJ_chr3_015290.1 vs. ExPASy TrEMBL
Match: A0A067DFA0|A0A067DFA0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039658mg PE=4 SV=1) HSP 1 Score: 401.364 bits (1030), Expect = 2.376e-141 Identity = 196/198 (98.99%), Postives = 197/198 (99.49%), Query Frame = 0 Query: 1 MCIYELEIKDVKFKVSVIDDADVIDKKISELSGMLFKMRRVVGFDVKFNSQTRIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGVDKKIASIHGKTGYPRNCDTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGIDYNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLLN 198
MCIYELEIKDVKFKVSVIDDADVIDKKISELSGMLFKMRRVVGFDVKFNSQTRIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGVDKK ASIHGKTGYPRNCDTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGID+NSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLLN
Sbjct: 1 MCIYELEIKDVKFKVSVIDDADVIDKKISELSGMLFKMRRVVGFDVKFNSQTRIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGVDKKTASIHGKTGYPRNCDTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGIDHNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLLN 198
BLAST of CMJ_chr3_015290.1 vs. ExPASy TrEMBL
Match: V4V4F2|V4V4F2_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003144mg PE=4 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 1.443e-46 Identity = 95/199 (47.74%), Postives = 132/199 (66.33%), Query Frame = 0 Query: 1 MCIYELEIKDVKFKVSVIDDADVIDKKISELSGMLFKMRRVVGFDVKFNSQ-TRIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGVDKKIASIHGKTGYPRNCDTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGIDYNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLLN 198
M YEL+I+ KV+V+D A +ID ++ L +L K +RVVG DVKFN + T+ AEMLIL A N CL IQLC L +IPES+ FLAD TICFVG ++ K+ + G+ C T ++LGH AARVLKKP I G+A+LA+EVGI +NSL++ P+W+A F+++Q+ AV EA Y++ D++LS L+
Sbjct: 1 MGKYELDIQGNNMKVTVVDHAALIDDNVAALKALL-KRQRVVGIDVKFNHRCTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKVDGL-GRCNL--RCKTAVELGHFAARVLKKPH-ISSFGLAKLAREVGI-HNSLASG--FNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSLD 191
BLAST of CMJ_chr3_015290.1 vs. ExPASy TrEMBL
Match: A0A067D370|A0A067D370_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g043928mg PE=4 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 1.443e-46 Identity = 95/199 (47.74%), Postives = 132/199 (66.33%), Query Frame = 0 Query: 1 MCIYELEIKDVKFKVSVIDDADVIDKKISELSGMLFKMRRVVGFDVKFNSQ-TRIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGVDKKIASIHGKTGYPRNCDTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGIDYNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLLN 198
M YEL+I+ KV+V+D A +ID ++ L +L K +RVVG DVKFN + T+ AEMLIL A N CL IQLC L +IPES+ FLAD TICFVG ++ K+ + G+ C T ++LGH AARVLKKP I G+A+LA+EVGI +NSL++ P+W+A F+++Q+ AV EA Y++ D++LS L+
Sbjct: 1 MGKYELDIQGNNMKVTVVDHAALIDDNVAALKALL-KRQRVVGIDVKFNHRCTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKVDGL-GRCNL--RCKTAVELGHFAARVLKKPH-ISSFGLAKLAREVGI-HNSLASG--FNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSLD 191
BLAST of CMJ_chr3_015290.1 vs. ExPASy TrEMBL
Match: A0A2H5PPQ5|A0A2H5PPQ5_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_156030 PE=4 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 6.686e-46 Identity = 95/199 (47.74%), Postives = 131/199 (65.83%), Query Frame = 0 Query: 1 MCIYELEIKDVKFKVSVIDDADVIDKKISELSGMLFKMRRVVGFDVKFNSQ-TRIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGVDKKIASIHGKTGYPRNCDTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGIDYNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLLN 198
M YEL+I+ KV+V+D A +ID I+ L +L K +RVVG DVKFN + T+ AEMLIL A N CL IQLC L +IPES+ FLAD TICF G ++ K+ + G+ C T ++LGHLAARVLKKP I G+A+LA+EVGI +NSL++ P+W+A F+++Q+ A EA Y++ D++LS L+
Sbjct: 1 MGKYELDIQGNNVKVTVVDHAALIDDNIAALKALL-KRQRVVGIDVKFNHRCTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFAGMEMNGKVDGL-GRCNL--RCKTAVELGHLAARVLKKPH-ISSFGLAKLAREVGI-HNSLASG--FNGYAPSWSARAFSNEQIKFASHEAFAYYVIGDRVLSSLD 191
BLAST of CMJ_chr3_015290.1 vs. ExPASy TrEMBL
Match: A0A7N2L461|A0A7N2L461_QUELO (3'-5' exonuclease domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 8.081e-43 Identity = 88/202 (43.56%), Postives = 121/202 (59.90%), Query Frame = 0 Query: 1 MCIYELEIKDVKFKVSVIDDADVIDKKISELSGMLFK--MRRVVGFDVKFNSQTRIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGVDKKIASIHGKTGYPR--NCDTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGIDYNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLLN 198
MC+YE+EI+ V K SV+D A ++D I EL K + +V FD+K A +LIL CL +QL L PES+ FL+D +CFVG GV K+ I +P+ C TG++LGHLAARVLKKP L G G+ ELA EVG+ Y +E ++VT +W A VF+ +QV +A+ +A Y++A+ LLSLL
Sbjct: 1 MCLYEIEIQGVYVKASVVDRAALVDAHIDELRSSFEKPLVAPIVAFDIKCKPNCNGAMLLILCIGTRCLIVQLYYLDSFPESIKKFLSDSNVCFVGVGVKDKVKKI---LQWPQMFGCKTGVELGHLAARVLKKPNLDG-CGLVELASEVGVYY-----EEPKSVTFSDWGARVFSHEQVKYAIHDAYASYLIANNLLSLLQ 193
BLAST of CMJ_chr3_015290.1 vs. ExPASy TrEMBL
Match: A0A2N9F917|A0A2N9F917_FAGSY (3'-5' exonuclease domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15288 PE=4 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 1.825e-41 Identity = 86/201 (42.79%), Postives = 123/201 (61.19%), Query Frame = 0 Query: 1 MCIYELEIKDVKFKVSVIDDADVIDKKISELSGMLFK--MRRVVGFDVKFNSQTRIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGVDKKIASIHGKTGYPR--NCDTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGIDYNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLL 197
+C+YE+EI+ V K SV+D A ++D I+EL K + +V FD+K A +LIL CL IQL L P+S+ FL+D+ +CFVG GV K+ I +P+ C TG++LGHLAARVLKKP L G+ ELA EVG+ Y +E ++VT +W A VF+++QV +A+ +A Y++A+ LLSLL
Sbjct: 10 ICMYEIEIQGVYVKASVVDRAVLVDAHIAELRSSFEKSLVAPIVAFDIKCMPNYNGAMLLILCVGTRCLVIQLYYLDSFPDSIKKFLSDKNVCFVGIGVKDKVKKI---LQWPQMFGCKTGVELGHLAARVLKKPNL-DECGLVELASEVGVYY-----EEPKSVTFSDWGARVFSNEQVKYAIHDAYASYLIANNLLSLL 201
BLAST of CMJ_chr3_015290.1 vs. ExPASy TrEMBL
Match: A0A5N6QVL0|A0A5N6QVL0_9ROSI (3'-5' exonuclease domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_006725 PE=4 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 3.977e-39 Identity = 89/203 (43.84%), Postives = 120/203 (59.11%), Query Frame = 0 Query: 1 MCIYELEIKDVKFKVSVIDDADVIDKKISELSGMLFKMRRV---VGFDVKFNSQTRIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGVDKKIASIHGKTGYPR--NCDTGIDLGHLAARVLKKPKLIG-LTGIAELAKEVGIDYNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLL 197
MC YE+EI+ V KVS++D A + D I+EL K+ V V FD+K + A +LIL A CL +QL + PESV FL D+ +CFVG GV +K++ + +P+ C TG++LGHLAARVLKKP L + ELA EVG+ Y K + A + +W A VF+ +QV HA+ +A Y VAD LLSLL
Sbjct: 1 MCRYEIEIQGVDVKVSIVDRAALADAHIAELRSSFEKLPSVAPLVAFDIKCIPRYNGAALLILCAGTCCLIVQLYYIDSFPESVKRFLNDQNVCFVGVGVKEKLSKLR---HWPQMCGCKTGVELGHLAARVLKKPNLDNDGCDLVELASEVGLFYG--EPKSVNAFS--DWIARVFSHEQVKHAIYDAYASYRVADSLLSLL 196
BLAST of CMJ_chr3_015290.1 vs. ExPASy TrEMBL
Match: A0A2N9HDY9|A0A2N9HDY9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37772 PE=4 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 9.699e-36 Identity = 78/199 (39.20%), Postives = 117/199 (58.79%), Query Frame = 0 Query: 4 YELEIKDVKFKVSVIDDADVIDKKISELSGMLFKM-RRVVGFDVKF----NSQTRIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGVDKKIASIHGKTGYPRNCDTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGIDYNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLL 197
YEL+++ K KVSV+D++ VID KI E L + RRVVG D+KF + A +L+L N CL IQL PE++ FL+D TICF+G GV S+ K C TG+++G+LAA++++KP I G+AELA EVG+D + P+WNA VF+D+++ +A+ A Y++ +KL ++
Sbjct: 16 YELDMQGAKVKVSVVDNSAVIDAKIEEFKSSLKTLQRRVVGLDIKFGKTISENKTTANILLLCVGNSCLIIQLLNFPVFPETLVEFLSDETICFLG-GVTYFQGSVFVK------CKTGVEIGYLAAKIMRKPD-IEKNGLAELAGEVGMDIKQ------PIGSCPDWNAKVFSDEEIRYAMHNAYTSYVIGNKLFGMV 200
BLAST of CMJ_chr3_015290.1 vs. ExPASy TrEMBL
Match: A0A2N9G3L4|A0A2N9G3L4_FAGSY (3'-5' exonuclease domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21653 PE=4 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.071e-32 Identity = 77/194 (39.69%), Postives = 115/194 (59.28%), Query Frame = 0 Query: 4 YELEIKDVKFKVSVIDDADVIDKKISELSGMLFKM---RRVVGFDVKFNSQTRIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGVDKKIASIHGKTGYPRNCDTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGIDYNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLL 194
+ +EI D K KVSV D++ V+ KI+EL L ++ R +VG D K N + ++ L+L N CL IQLCRL +P+++ FLAD TICFVG G+ + + + C GID+G+LAAR+ K+P + G G+ ELA EVG+ N + P+WN VF+D+Q+ +AV A Y++ ++LL
Sbjct: 19 FGIEIHDEKVKVSVADNSAVVVAKINELKCSLKRLEIHRHLVGIDFKSNQRGKV---LLLCVENHCLIIQLCRLDCVPKTLKRFLADETICFVGTGMSNIVQVLQYDDIH---CGAGIDVGYLAARIWKEPNIEGY-GLVELAGEVGM------NIKEPIGECPDWNDSVFSDEQMKYAVHNAYTSYVIGNELL 199 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_015290.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_015290.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_015290.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_015290.1_cmj_v1 ID=CMJ_chr3_015290.1_cmj_v1; Name=CMJ_chr3_015290.1; organism=Citrus maxima; type=mRNA; length=597bpback to top protein sequence of CMJ_chr3_015290.1_cmj_v1 >CMJ_chr3_015290.1_cmj_v1 ID=CMJ_chr3_015290.1_cmj_v1; Name=CMJ_chr3_015290.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=199bpback to top mRNA from alignment at chr3:33897883..33898479+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=597bp; location=Sequence derived from: chr3:33897883..33898479+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:33897883..33898479+ >CMJ_chr3_015290.1_cmj_v1 ID=CMJ_chr3_015290.1_cmj_v1; Name=CMJ_chr3_015290.1; organism=Citrus maxima; type=CDS; length=597bp; location=Sequence derived from: chr3:33897883..33898479+ (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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