CMJ_chr3_015330.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr3_015330.1
Unique Name	CMJ_chr3_015330.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	348

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cccmjL105	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cmjcsR234	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
cccmjL369	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cmjfhsR203	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmjfhsR238	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmjzkR211	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
cmcmjL151	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmjcsnR260	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjcsnR261	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjcsnR264	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjcsnR272	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjeglR0429	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR0512	Citrus glauca CRC3463 genome v1	Citrus glauca
abhcmjL143	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
cllcmjL045	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cmjcmxR193	Citrus maxima cv. XGF genome v1.0	Citrus maxima
clhcmjL363	Clausena lansium cv. HP genome v1.0	Clausena lansium
aeacmjL359	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
clxcmjL019	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
clxcmjL488	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
cmjcumR236	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
cmjcumR242	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
cmjcrcR168	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcrcR192	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata

Orthologs


Gene/Transcript	Assembly	Species
HP032620.1	Clausena lansium cv. HP genome v1.0	Clausena lansium
Fh3g25650.1	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
gene-CUMW_223480-mRNA1	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
Ciclev10003072m	Citrus clementina genome v1.0 (JGI)	Citrus clementina
Abu3g_013530.1	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
eg_v1.0.alternate_g21744.t1	Citrus glauca CRC3463 genome v1	Citrus glauca
evm.model.ctg158.49	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
Pt5g012430.1	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
CP3g001450.t1	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
EVM_prediction_chr2.1_tiancheng.1416	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
LW138180.1	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
Aeg137320.1	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
orange1.1g035355m.v1.1	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Cg2g032720.1	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
XGF027380.1	Citrus maxima cv. XGF genome v1.0	Citrus maxima

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr3_015330	CMJ_chr3_015330_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_015330.1.exon2	CMJ_chr3_015330.1.exon2_cmj_v1	Citrus maxima	exon
CMJ_chr3_015330.1.exon1	CMJ_chr3_015330.1.exon1_cmj_v1	Citrus maxima	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_015330.1.cds.2	CMJ_chr3_015330.1.cds.2_cmj_v1	Citrus maxima	CDS
CMJ_chr3_015330.1.cds.1	CMJ_chr3_015330.1.cds.1_cmj_v1	Citrus maxima	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_015330.1_cmj_v1	CMJ_chr3_015330.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr3_015330.1_cmj_v1	CMJ_chr3_015330.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

[Close]

BLAST of CMJ_chr3_015330.1 vs. ExPASy TrEMBL
Match: A0A2H5QEW3|A0A2H5QEW3_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_223480 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.754e-21
Identity = 43/49 (87.76%), Postives = 44/49 (89.80%), Query Frame = 0

Query:   58 MAWGRWWSASALRWPQYYFAVMSSPSTWITRELSFVDDVVWSVVTAVES 106
            MAWGRWW ASALRWPQ+Y   MS PSTWITRELSFVDDVVWSVVTAVES
Sbjct:    1 MAWGRWWCASALRWPQHYLTAMSWPSTWITRELSFVDDVVWSVVTAVES 49

[Close]

BLAST of CMJ_chr3_015330.1 vs. ExPASy TrEMBL
Match: V4V4F7|V4V4F7_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003072mg PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.754e-21
Identity = 43/49 (87.76%), Postives = 44/49 (89.80%), Query Frame = 0

Query:   58 MAWGRWWSASALRWPQYYFAVMSSPSTWITRELSFVDDVVWSVVTAVES 106
            MAWGRWW ASALRWPQ+Y   MS PSTWITRELSFVDDVVWSVVTAVES
Sbjct:    1 MAWGRWWCASALRWPQHYLTAMSWPSTWITRELSFVDDVVWSVVTAVES 49

[Close]

BLAST of CMJ_chr3_015330.1 vs. ExPASy TrEMBL
Match: A0A067GPJ2|A0A067GPJ2_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035355mg PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.754e-21
Identity = 43/49 (87.76%), Postives = 44/49 (89.80%), Query Frame = 0

Query:   58 MAWGRWWSASALRWPQYYFAVMSSPSTWITRELSFVDDVVWSVVTAVES 106
            MAWGRWW ASALRWPQ+Y   MS PSTWITRELSFVDDVVWSVVTAVES
Sbjct:    1 MAWGRWWCASALRWPQHYLTAMSWPSTWITRELSFVDDVVWSVVTAVES 49

The following BLAST results are available for this feature:

BLAST of CMJ_chr3_015330.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr3_015330.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr3_015330.1 vs. ExPASy TrEMBL

BLAST of CMJ_chr3_015330.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A2H5QEW3\|A0A2H5QEW3_CITUN	4.754e-21	87.76	Uncharacterized protein OS=Citrus unshiu OX=55188 ...	[more]
V4V4F7\|V4V4F7_CITCL	4.754e-21	87.76	Uncharacterized protein OS=Citrus clementina OX=85...	[more]
A0A067GPJ2\|A0A067GPJ2_CITSI	4.754e-21	87.76	Uncharacterized protein OS=Citrus sinensis OX=2711...	[more]

BLAST of CMJ_chr3_015330.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_015330.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:33921483..33922082-
coding sequence from alignment at chr3:33921483..33922082-

mRNA sequence

>CMJ_chr3_015330.1_cmj_v1 ID=CMJ_chr3_015330.1_cmj_v1; Name=CMJ_chr3_015330.1; organism=Citrus maxima; type=mRNA; length=348bp
ATGCATGCCATTAACGTGCACTCTTACCACACCGTATACCTTCCCACCCA
CAATCACACCAATATAAAACCCCAACGCCAGTCCAGCACCCTTTGCCCAA
GAAAGAACATTTACGTTTTCAAAAAGGGAGATTCAGATTCGTATAGAATA
TTAAATACAATTTCATCGCGAATGGCGTGGGGAAGGTGGTGGTCCGCGTC
AGCACTACGGTGGCCGCAGTACTACTTCGCGGTAATGTCGTCGCCGTCGA
CGTGGATCACGCGCGAGCTGAGCTTCGTGGACGACGTCGTGTGGAGCGTG
GTGACGGCCGTGGAGTCGACTTGGTATCCAGGTCAGGTGGATGACTGA

protein sequence of CMJ_chr3_015330.1_cmj_v1

>CMJ_chr3_015330.1_cmj_v1 ID=CMJ_chr3_015330.1_cmj_v1; Name=CMJ_chr3_015330.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=116bp
MHAINVHSYHTVYLPTHNHTNIKPQRQSSTLCPRKNIYVFKKGDSDSYRI
LNTISSRMAWGRWWSASALRWPQYYFAVMSSPSTWITRELSFVDDVVWSV
VTAVESTWYPGQVDD*

mRNA from alignment at chr3:33921483..33922082-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=600bp; location=Sequence derived from: chr3:33921483..33922082- (Citrus maxima
ATGCATGCCATTAACGTGCACTCTTACCACACCGTATACCTTCCCACCCA
CAATCACACCAATATAAAACCCCAACGCCAGTCCAGCACCCTTTGCCCAA
GAAAGAACATTTACGTTTTCAAAAAGGGAGATTCAGATTCGTATAGAATA
TTAAATACAATTTCATCGCGAATGGCGTGGGGAAGGTGGTGGTCCGCGTC
AGCACTACGGTGGCCGCAGTACTACTTCGCGGTAATGTCGTCGCCGTCGA
CGTGGATCACGCGCGAGCTGAGCTTCGTGGACGACGTCGTGTGGAGCGTG
GTGACGGCCGTGGAGTCGGTGGCTCTTCTCTCCATGTTCTGCTTCTTCTT
TCTCTTCTGTGGCTGCACCGTTTAAAATCTTCGGACACTTTCGGACATTG
GTGACGTCACGCGGATCTTGTGTGTCGGATTCTGACGTCGTCAGTCTGTT
GAGTTGCTGGATCAGTCACGTGGCGGATATTTCTAGGTCGTTGGCTCGTT
TGTTTCTAGTTCGCCGTTGATTAGAACAGTACAGTACTGCATGTATCTTA
AGTTTTTAACTTTTTAGTAGACTTGGTATCCAGGTCAGGTGGATGACTGA

Coding sequence (CDS) from alignment at chr3:33921483..33922082-

>CMJ_chr3_015330.1_cmj_v1 ID=CMJ_chr3_015330.1_cmj_v1; Name=CMJ_chr3_015330.1; organism=Citrus maxima; type=CDS; length=348bp; location=Sequence derived from: chr3:33921483..33922082- (Citrus maxima
ATGCATGCCATTAACGTGCACTCTTACCACACCGTATACCTTCCCACCCA
CAATCACACCAATATAAAACCCCAACGCCAGTCCAGCACCCTTTGCCCAA
GAAAGAACATTTACGTTTTCAAAAAGGGAGATTCAGATTCGTATAGAATA
TTAAATACAATTTCATCGCGAATGGCGTGGGGAAGGTGGTGGTCCGCGTC
AGCACTACGGTGGCCGCAGTACTACTTCGCGGTAATGTCGTCGCCGTCGA
CGTGGATCACGCGCGAGCTGAGCTTCGTGGACGACGTCGTGTGGAGCGTG
GTGACGGCCGTGGAGTCGACTTGGTATCCAGGTCAGGTGGATGACTGA