CMJ_chr3_015500.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_015500.1 vs. ExPASy TrEMBL
Match: V4TB41|V4TB41_CITCL (Tr-type G domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10000191mg PE=4 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 3.930e-43 Identity = 82/93 (88.17%), Postives = 83/93 (89.25%), Query Frame = 0 Query: 10 RVASIKNNDKPVDVAKKGQEVSIKVRDDLTFVIEGGNSEEMQKMCFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKVLKEIFKIP 102
RVASIKNNDKPVDVAKKGQEVSIK IEGGNSEEMQK FRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKVLK+IFKIP
Sbjct: 849 RVASIKNNDKPVDVAKKGQEVSIK--------IEGGNSEEMQKNFFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKVLKKIFKIP 933
BLAST of CMJ_chr3_015500.1 vs. ExPASy TrEMBL
Match: A0A2H5QET9|A0A2H5QET9_CITUN (Tr-type G domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_223320 PE=4 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 4.547e-39 Identity = 75/86 (87.21%), Postives = 76/86 (88.37%), Query Frame = 0 Query: 10 RVASIKNNDKPVDVAKKGQEVSIKVRDDLTFVIEGGNSEEMQKMCFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKVL 95
RVASIKNNDKPVDVAKKGQEVSIK IEGGNSEEMQK FRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVK+L
Sbjct: 557 RVASIKNNDKPVDVAKKGQEVSIK--------IEGGNSEEMQKNFFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKIL 634
BLAST of CMJ_chr3_015500.1 vs. ExPASy TrEMBL
Match: A0A2H5QEU3|A0A2H5QEU3_CITUN (Tr-type G domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_223320 PE=4 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 5.391e-39 Identity = 75/86 (87.21%), Postives = 76/86 (88.37%), Query Frame = 0 Query: 10 RVASIKNNDKPVDVAKKGQEVSIKVRDDLTFVIEGGNSEEMQKMCFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKVL 95
RVASIKNNDKPVDVAKKGQEVSIK IEGGNSEEMQK FRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVK+L
Sbjct: 591 RVASIKNNDKPVDVAKKGQEVSIK--------IEGGNSEEMQKNFFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKIL 668
BLAST of CMJ_chr3_015500.1 vs. ExPASy TrEMBL
Match: A0A6J1BMD8|A0A6J1BMD8_9ROSI (eukaryotic translation initiation factor 5B-like OS=Herrania umbratica OX=108875 GN=LOC110429134 PE=4 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.323e-27 Identity = 56/93 (60.22%), Postives = 71/93 (76.34%), Query Frame = 0 Query: 10 RVASIKNNDKPVDVAKKGQEVSIKVRDDLTFVIEGGNSEEMQKMCFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKVLKEIFKIP 102
R+AS++NN KPVDVAKKGQ+V+IK I G N EE QKM R+F + DELVSHISRRSID+LKA Y+DD++ ++W LV+ LK +FKIP
Sbjct: 51 RIASVENNHKPVDVAKKGQKVAIK--------IVGSNPEEQQKMYGRHFELDDELVSHISRRSIDVLKANYRDDLTLEEWRLVQRLKILFKIP 135
BLAST of CMJ_chr3_015500.1 vs. ExPASy TrEMBL
Match: A0A5C7HV93|A0A5C7HV93_9ROSI (Tr-type G domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_014789 PE=4 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 9.888e-27 Identity = 59/92 (64.13%), Postives = 71/92 (77.17%), Query Frame = 0 Query: 10 RVASIKNNDKPVDVAKKGQEVSIKVRDDLTFVIEGGNSEEMQKMCFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKVLKEIFKI 101
R+ASI+NN KPV++AKKGQ+VSIK I G N EE QKM R+F V DELVSHISRRSID+LKAYY+DD+SR++W LV LK +FKI
Sbjct: 889 RIASIENNRKPVEIAKKGQKVSIK--------IVGSNHEEQQKMFGRHFDVEDELVSHISRRSIDVLKAYYQDDLSREEWKLVVKLKNLFKI 972
BLAST of CMJ_chr3_015500.1 vs. ExPASy TrEMBL
Match: A0A2Z6LHH0|A0A2Z6LHH0_TRISU (Eukaryotic translation initiation factor 5B OS=Trifolium subterraneum OX=3900 GN=TSUD_43070 PE=4 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 5.771e-26 Identity = 55/92 (59.78%), Postives = 68/92 (73.91%), Query Frame = 0 Query: 10 RVASIKNNDKPVDVAKKGQEVSIKVRDDLTFVIEGGNSEEMQKMCFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKVLKEIFKI 101
R+ASI+NN KPVD AKKGQ+V+IK I G NSEE QKM R+F + DELVSHISRRSID+LK Y+DD+S ++W LV LK +F+I
Sbjct: 136 RIASIENNHKPVDYAKKGQKVAIK--------IVGSNSEEQQKMFGRHFEIDDELVSHISRRSIDILKTNYRDDLSMEEWKLVVKLKSLFRI 219
BLAST of CMJ_chr3_015500.1 vs. ExPASy TrEMBL
Match: A0A2I0JNC5|A0A2I0JNC5_PUNGR (Eukaryotic translation initiation factor 5B OS=Punica granatum OX=22663 GN=CRG98_022094 PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 3.306e-25 Identity = 55/92 (59.78%), Postives = 67/92 (72.83%), Query Frame = 0 Query: 10 RVASIKNNDKPVDVAKKGQEVSIKVRDDLTFVIEGGNSEEMQKMCFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKVLKEIFKI 101
R+ASI+NN KPVD AKKGQ+V+IK I G N EE QKM R+F + DELVSHISRRSID+LK Y+DD+S ++W LV LK +FKI
Sbjct: 136 RIASIENNKKPVDTAKKGQKVAIK--------IVGSNPEEQQKMYGRHFDLEDELVSHISRRSIDILKTNYRDDLSIEEWKLVVKLKSLFKI 219
BLAST of CMJ_chr3_015500.1 vs. ExPASy TrEMBL
Match: A0A061DJB3|A0A061DJB3_THECC (Eukaryotic translation initiation factor 5B OS=Theobroma cacao OX=3641 GN=TCM_001621 PE=4 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.709e-25 Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = 0 Query: 10 RVASIKNNDKPVDVAKKGQEVSIKVRDDLTFVIEGGNSEEMQKMCFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKVLKEIFKIP 102
R+ASI+NN KPVDVAKKGQ+V+IK I G N EE QKM R+F + DELVSHISRRSID+LKA Y+DD++ ++W LV+ LK +FKIP
Sbjct: 1347 RIASIENNHKPVDVAKKGQKVAIK--------IVGSNPEEQQKMYGRHFELDDELVSHISRRSIDVLKANYRDDLNLEEWRLVQRLKILFKIP 1431
BLAST of CMJ_chr3_015500.1 vs. ExPASy TrEMBL
Match: A0A6P6URZ7|A0A6P6URZ7_COFAR (Eukaryotic translation initiation factor 5B OS=Coffea arabica OX=13443 GN=LOC113712977 PE=4 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 8.584e-25 Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 0 Query: 10 RVASIKNNDKPVDVAKKGQEVSIKVRDDLTFVIEGGNSEEMQKMCFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKVLKEIFKIP 102
R+ASI+NN KPVD AKKGQ+V+IK I G N EE QKM R+F + DELVSHISRRSID+LKA Y++D+S ++W LV LK +FKIP
Sbjct: 1339 RIASIENNHKPVDYAKKGQKVAIK--------IVGSNPEEQQKMFGRHFEIEDELVSHISRRSIDILKANYREDLSLEEWKLVAKLKNLFKIP 1423
BLAST of CMJ_chr3_015500.1 vs. ExPASy TrEMBL
Match: A0A061DJI5|A0A061DJI5_THECC (Eukaryotic translation initiation factor 5B OS=Theobroma cacao OX=3641 GN=TCM_001621 PE=4 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 8.744e-25 Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = 0 Query: 10 RVASIKNNDKPVDVAKKGQEVSIKVRDDLTFVIEGGNSEEMQKMCFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKVLKEIFKIP 102
R+ASI+NN KPVDVAKKGQ+V+IK I G N EE QKM R+F + DELVSHISRRSID+LKA Y+DD++ ++W LV+ LK +FKIP
Sbjct: 1299 RIASIENNHKPVDVAKKGQKVAIK--------IVGSNPEEQQKMYGRHFELDDELVSHISRRSIDVLKANYRDDLNLEEWRLVQRLKILFKIP 1383
BLAST of CMJ_chr3_015500.1 vs. ExPASy Swiss-Prot
Match: IF2P_MOUSE (Eukaryotic translation initiation factor 5B OS=Mus musculus OX=10090 GN=Eif5b PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 3.105e-15 Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 0 Query: 11 VASIKNNDKPVDVAKKGQEVSIKVRDDLTFVIEGGNSEEMQKMCFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKVLKEIFKI 101
V SI+ N K VDVAKKGQEV +K+ I G E KM R+F D LVS ISR+SID LK +++D+M + DW L+ LK++F+I
Sbjct: 1134 VTSIEINHKQVDVAKKGQEVCVKIEP-----IPG----ESPKMFGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFEI 1215
BLAST of CMJ_chr3_015500.1 vs. ExPASy Swiss-Prot
Match: IF2P_RAT (Eukaryotic translation initiation factor 5B OS=Rattus norvegicus OX=10116 GN=Eif5b PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 3.228e-15 Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 0 Query: 11 VASIKNNDKPVDVAKKGQEVSIKVRDDLTFVIEGGNSEEMQKMCFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKVLKEIFKI 101
V SI+ N K VDVAKKGQEV +K+ I G E KM R+F D LVS ISR+SID LK +++D+M + DW L+ LK++F+I
Sbjct: 1134 VTSIEINHKQVDVAKKGQEVCVKIEP-----IPG----ESPKMFGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFEI 1215
BLAST of CMJ_chr3_015500.1 vs. ExPASy Swiss-Prot
Match: IF2P_PONAB (Eukaryotic translation initiation factor 5B OS=Pongo abelii OX=9601 GN=EIF5B PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 3.229e-15 Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 0 Query: 11 VASIKNNDKPVDVAKKGQEVSIKVRDDLTFVIEGGNSEEMQKMCFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKVLKEIFKI 101
V SI+ N K VDVAKKGQEV +K+ I G E KM R+F D LVS ISR+SID LK +++D+M + DW L+ LK++F+I
Sbjct: 1138 VTSIEINHKQVDVAKKGQEVCVKIE-----PIPG----ESPKMFGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFEI 1219
BLAST of CMJ_chr3_015500.1 vs. ExPASy Swiss-Prot
Match: IF2P_HUMAN (Eukaryotic translation initiation factor 5B OS=Homo sapiens OX=9606 GN=EIF5B PE=1 SV=4) HSP 1 Score: 72.7886 bits (177), Expect = 3.260e-15 Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 0 Query: 11 VASIKNNDKPVDVAKKGQEVSIKVRDDLTFVIEGGNSEEMQKMCFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKVLKEIFKI 101
V SI+ N K VDVAKKGQEV +K+ I G E KM R+F D LVS ISR+SID LK +++D+M + DW L+ LK++F+I
Sbjct: 1138 VTSIEINHKQVDVAKKGQEVCVKIEP-----IPG----ESPKMFGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFEI 1219
BLAST of CMJ_chr3_015500.1 vs. Araport11
Match: AT1G76810.1 (| eukaryotic translation initiation factor 2 (eIF-2) family protein | Chr1:28831366-28836310 REVERSE LENGTH=1294 | 201606) HSP 1 Score: 97.4413 bits (241), Expect = 7.459e-25 Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 0 Query: 10 RVASIKNNDKPVDVAKKGQEVSIKVRDDLTFVIEGGNSEEMQKMCFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKVLKEIFKI 101
R+ASI+NN KPVD AKKG +V+IK I G N+EE QKM R+F + DELVSHISRRSID+LK+ Y+D++S ++W LV LK IFKI
Sbjct: 1211 RIASIENNHKPVDYAKKGNKVAIK--------IVGSNAEE-QKMFGRHFDMEDELVSHISRRSIDILKSNYRDELSLEEWKLVVKLKNIFKI 1293
BLAST of CMJ_chr3_015500.1 vs. Araport11
Match: AT1G76820.1 (| eukaryotic translation initiation factor 2 (eIF-2) family protein | Chr1:28837796-28842343 FORWARD LENGTH=1166 | 201606) HSP 1 Score: 82.0333 bits (201), Expect = 2.134e-19 Identity = 54/93 (58.06%), Postives = 64/93 (68.82%), Query Frame = 0 Query: 10 RVASIKNNDKPVDVAKKGQEVSIKVRDDLTFVIEGGNSEEMQKMCFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKVLKEIFKIP 102
R+ASI+NN KPVD A+KG EV+IK I N EE QKM R+F + DELVSHISRRSID+LKA Y +MS + W L+ LK IFKIP
Sbjct: 1083 RIASIENNHKPVDYAEKGDEVAIK--------IVASNREE-QKMFGRHFDMEDELVSHISRRSIDILKADYMKEMSTEKWKLLLKLKRIFKIP 1166
BLAST of CMJ_chr3_015500.1 vs. Araport11
Match: AT1G21160.1 (| eukaryotic translation initiation factor 2 (eIF-2) family protein | Chr1:7408121-7412455 REVERSE LENGTH=1092 | 201606) HSP 1 Score: 77.7962 bits (190), Expect = 5.584e-18 Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 0 Query: 10 RVASIKNNDK-PVDVAKKGQEVSIKVRDDLTFVIEGGNSEEMQKMCFRNFGVGDELVSHISRRSIDLLKAYYKDDMSRKDWNLVKVLKEIFKI 101
RV+SIKNN+ PVD A+KGQEV+IK I N EE QKM R+FGV D L+SHIS RS+D+++ Y +++S + +LV LK IFKI
Sbjct: 1008 RVSSIKNNNNMPVDYARKGQEVAIK--------IIASNPEE-QKMFGRHFGVDDRLISHISSRSVDVIRTNYWNELSNDEKDLVLRLKRIFKI 1091
BLAST of CMJ_chr3_015500.1 vs. Araport11
Match: AT1G76720.1 (| eukaryotic translation initiation factor 2 (eIF-2) family protein | Chr1:28794144-28798780 REVERSE LENGTH=1191 | 201606) HSP 1 Score: 72.4034 bits (176), Expect = 4.250e-16 Identity = 43/71 (60.56%), Postives = 50/71 (70.42%), Query Frame = 0 Query: 10 RVASIKNNDKPVDVAKKGQEVSIKVRDDLTFVIEGGNSEEMQKMCFRNFGVGDELVSHISRRSIDLLKAYY 80
R+ASI+NN KPVD A+KG EV+IK I N EE QKM R+F + DELVSHISRRSID+LKA Y
Sbjct: 1125 RIASIENNHKPVDYAEKGDEVAIK--------IVASNREE-QKMFGRHFDMEDELVSHISRRSIDILKADY 1186
BLAST of CMJ_chr3_015500.1 vs. Araport11
Match: AT1G76720.2 (| eukaryotic translation initiation factor 2 (eIF-2) family protein | Chr1:28794144-28798810 REVERSE LENGTH=1224 | 201606) HSP 1 Score: 72.4034 bits (176), Expect = 4.296e-16 Identity = 43/71 (60.56%), Postives = 50/71 (70.42%), Query Frame = 0 Query: 10 RVASIKNNDKPVDVAKKGQEVSIKVRDDLTFVIEGGNSEEMQKMCFRNFGVGDELVSHISRRSIDLLKAYY 80
R+ASI+NN KPVD A+KG EV+IK I N EE QKM R+F + DELVSHISRRSID+LKA Y
Sbjct: 1158 RIASIENNHKPVDYAEKGDEVAIK--------IVASNREE-QKMFGRHFDMEDELVSHISRRSIDILKADY 1219 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_015500.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_015500.1 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 4 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_015500.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_015500.1_cmj_v1 ID=CMJ_chr3_015500.1_cmj_v1; Name=CMJ_chr3_015500.1; organism=Citrus maxima; type=mRNA; length=309bpback to top protein sequence of CMJ_chr3_015500.1_cmj_v1 >CMJ_chr3_015500.1_cmj_v1 ID=CMJ_chr3_015500.1_cmj_v1; Name=CMJ_chr3_015500.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=103bpback to top mRNA from alignment at chr3:33989720..33990289- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=570bp; location=Sequence derived from: chr3:33989720..33990289- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:33989720..33990289- >CMJ_chr3_015500.1_cmj_v1 ID=CMJ_chr3_015500.1_cmj_v1; Name=CMJ_chr3_015500.1; organism=Citrus maxima; type=CDS; length=309bp; location=Sequence derived from: chr3:33989720..33990289- (Citrus maximaback to top |