CMJ_chr3_017170.2
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_017170.2 vs. ExPASy TrEMBL
Match: A0A2H5NP67|A0A2H5NP67_CITUN (TPR_REGION domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_059720 PE=4 SV=1) HSP 1 Score: 424.476 bits (1090), Expect = 4.933e-150 Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0 Query: 1 MWGDILLQAVLILTGVFMLLALYEIPQKFISKLRFRNRGSIQAKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLGS 212
MWGDILLQAVLILTGVFMLLALYEIPQKFISKLRFRNRGSIQAKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLGS
Sbjct: 1 MWGDILLQAVLILTGVFMLLALYEIPQKFISKLRFRNRGSIQAKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLGS 212
BLAST of CMJ_chr3_017170.2 vs. ExPASy TrEMBL
Match: V4T1N6|V4T1N6_CITCL (TPR_REGION domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10002461mg PE=4 SV=1) HSP 1 Score: 421.394 bits (1082), Expect = 8.741e-149 Identity = 211/212 (99.53%), Postives = 211/212 (99.53%), Query Frame = 0 Query: 1 MWGDILLQAVLILTGVFMLLALYEIPQKFISKLRFRNRGSIQAKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLGS 212
MWGDILLQAVLILTGVFMLLALYEIPQKFISKLRFRNRGSIQAKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL S
Sbjct: 1 MWGDILLQAVLILTGVFMLLALYEIPQKFISKLRFRNRGSIQAKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLVS 212
BLAST of CMJ_chr3_017170.2 vs. ExPASy TrEMBL
Match: A0A067H0K8|A0A067H0K8_CITSI (TPR_REGION domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g039398mg PE=4 SV=1) HSP 1 Score: 336.65 bits (862), Expect = 7.127e-116 Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0 Query: 41 IQAKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLGS 212
IQAKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL S
Sbjct: 1 IQAKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLVS 172
BLAST of CMJ_chr3_017170.2 vs. ExPASy TrEMBL
Match: A0A7J9I729|A0A7J9I729_9ROSI (TPR_REGION domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_022164 PE=4 SV=1) HSP 1 Score: 295.049 bits (754), Expect = 7.633e-99 Identity = 152/212 (71.70%), Postives = 184/212 (86.79%), Query Frame = 0 Query: 1 MWGDILLQAVLILTGVFMLLALYEIPQKFISKLRFRNRGSIQAKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLGS 212
MW D+LLQA +IL +FM LA+++IP+K +K+R+RNR QAKRHFV+GAQLLAQARSSKS+SS +SLAKQAEAEADKAIS D KDAAA+ILKALALDLQGFKTSAL+S D+ALS A K+LT+KE+GDALFKRAE+KMSMNRR GRVDSAIDDLT+A+++ DN KA CLLGECYE+KKM+ EAK+A+E ALK+EP+ A+ A+DRLGS
Sbjct: 1 MWTDLLLQAAIILVTIFMFLAMHDIPKKIFTKIRYRNRADFQAKRHFVLGAQLLAQARSSKSRSSTASLAKQAEAEADKAISLDRKDAAAYILKALALDLQGFKTSALDSLDIALSPIAAKSLTDKERGDALFKRAELKMSMNRRGGRVDSAIDDLTKALELSGDNAKAFCLLGECYEMKKMKSEAKSAFEKALKVEPTSNVARTAIDRLGS 212
BLAST of CMJ_chr3_017170.2 vs. ExPASy TrEMBL
Match: A0A7J8MMS1|A0A7J8MMS1_9ROSI (TPR_REGION domain-containing protein OS=Gossypium lobatum OX=34289 GN=Golob_010888 PE=4 SV=1) HSP 1 Score: 295.049 bits (754), Expect = 9.927e-99 Identity = 152/212 (71.70%), Postives = 184/212 (86.79%), Query Frame = 0 Query: 1 MWGDILLQAVLILTGVFMLLALYEIPQKFISKLRFRNRGSIQAKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLGS 212
MW D+LLQA +IL +FM LA+++IP+K +K+R+RNR QAKRHFV+GAQLLAQARSSKS+SS +SLAKQAEAEADKAIS D KDAAA+ILKALALDLQGFKTSAL+S D+ALS A K+LT+KE+GDALFKRAE+KMSMNRR GRVDSAIDDLT+A+++ DN KA CLLGECYE+KKM+ EAK+A+E ALK+EP+ A+ A+DRLGS
Sbjct: 1 MWTDLLLQAAIILVTIFMFLAMHDIPKKIFTKIRYRNRADFQAKRHFVLGAQLLAQARSSKSRSSTASLAKQAEAEADKAISLDRKDAAAYILKALALDLQGFKTSALDSLDVALSPIAAKSLTDKERGDALFKRAELKMSMNRRGGRVDSAIDDLTKALELSGDNAKAFCLLGECYEMKKMKSEAKSAFEKALKVEPTSNVARTAIDRLGS 212
BLAST of CMJ_chr3_017170.2 vs. ExPASy TrEMBL
Match: A0A0D2S6I8|A0A0D2S6I8_GOSRA (TPR_REGION domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_009G228900 PE=4 SV=1) HSP 1 Score: 295.049 bits (754), Expect = 9.927e-99 Identity = 152/212 (71.70%), Postives = 184/212 (86.79%), Query Frame = 0 Query: 1 MWGDILLQAVLILTGVFMLLALYEIPQKFISKLRFRNRGSIQAKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLGS 212
MW D+LLQA +IL +FM LA+++IP+K +K+R+RNR QAKRHFV+GAQLLAQARSSKS+SS +SLAKQAEAEADKAIS D KDAAA+ILKALALDLQGFKTSAL+S D+ALS A K+LT+KE+GDALFKRAE+KMSMNRR GRVDSAIDDLT+A+++ DN KA CLLGECYE+KKM+ EAK+A+E ALK+EP+ A+ A+DRLGS
Sbjct: 1 MWTDLLLQAAIILVTIFMFLAMHDIPKKIFTKIRYRNRADFQAKRHFVLGAQLLAQARSSKSRSSTASLAKQAEAEADKAISLDRKDAAAYILKALALDLQGFKTSALDSLDVALSPIAAKSLTDKERGDALFKRAELKMSMNRRGGRVDSAIDDLTKALELSGDNAKAFCLLGECYEMKKMKSEAKSAFEKALKVEPTSNVARTAIDRLGS 212
BLAST of CMJ_chr3_017170.2 vs. ExPASy TrEMBL
Match: A0A7J8XWS8|A0A7J8XWS8_GOSAI (TPR_REGION domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_009406 PE=4 SV=1) HSP 1 Score: 293.508 bits (750), Expect = 3.536e-98 Identity = 151/212 (71.23%), Postives = 183/212 (86.32%), Query Frame = 0 Query: 1 MWGDILLQAVLILTGVFMLLALYEIPQKFISKLRFRNRGSIQAKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLGS 212
MW D+LLQA +IL +FM LA+++IP+K +K+R+RNR QAKRHFV+GAQLLAQARSSKS+SS +SLAKQAEAEADKAIS D KDAAA+ILKALALDLQGFKTSAL+S D+ALS A K+LT+KE+GDALFKRAE+KMSMNRR GRVDS IDDLT+A+++ DN KA CLLGECYE+KKM+ EAK+A+E ALK+EP+ A+ A+DRLGS
Sbjct: 1 MWTDLLLQAAIILVTIFMFLAMHDIPKKIFTKIRYRNRADFQAKRHFVLGAQLLAQARSSKSRSSTASLAKQAEAEADKAISLDRKDAAAYILKALALDLQGFKTSALDSLDVALSPIAAKSLTDKERGDALFKRAELKMSMNRRGGRVDSTIDDLTKALELSGDNAKAFCLLGECYEMKKMKSEAKSAFEKALKVEPTSNVARTAIDRLGS 212
BLAST of CMJ_chr3_017170.2 vs. ExPASy TrEMBL
Match: A0A7J8Q2Y4|A0A7J8Q2Y4_GOSRA (TPR_REGION domain-containing protein (Fragment) OS=Gossypium raimondii OX=29730 GN=Gorai_012508 PE=4 SV=1) HSP 1 Score: 293.123 bits (749), Expect = 4.642e-98 Identity = 151/211 (71.56%), Postives = 183/211 (86.73%), Query Frame = 0 Query: 1 MWGDILLQAVLILTGVFMLLALYEIPQKFISKLRFRNRGSIQAKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLG 211
MW D+LLQA +IL +FM LA+++IP+K +K+R+RNR QAKRHFV+GAQLLAQARSSKS+SS +SLAKQAEAEADKAIS D KDAAA+ILKALALDLQGFKTSAL+S D+ALS A K+LT+KE+GDALFKRAE+KMSMNRR GRVDSAIDDLT+A+++ DN KA CLLGECYE+KKM+ EAK+A+E ALK+EP+ A+ A+DRLG
Sbjct: 1 MWTDLLLQAAIILVTIFMFLAMHDIPKKIFTKIRYRNRADFQAKRHFVLGAQLLAQARSSKSRSSTASLAKQAEAEADKAISLDRKDAAAYILKALALDLQGFKTSALDSLDVALSPIAAKSLTDKERGDALFKRAELKMSMNRRGGRVDSAIDDLTKALELSGDNAKAFCLLGECYEMKKMKSEAKSAFEKALKVEPTSNVARTAIDRLG 211
BLAST of CMJ_chr3_017170.2 vs. ExPASy TrEMBL
Match: A0A1U8PF48|A0A1U8PF48_GOSHI (uncharacterized protein LOC107957828 OS=Gossypium hirsutum OX=3635 GN=LOC107957828 PE=4 SV=1) HSP 1 Score: 291.967 bits (746), Expect = 1.405e-97 Identity = 152/212 (71.70%), Postives = 183/212 (86.32%), Query Frame = 0 Query: 1 MWGDILLQAVLILTGVFMLLALYEIPQKFISKLRFRNRGSIQAKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLGS 212
MW D+LLQA +IL +FM LA+++IP+K +K+R+RNR QAKRHFV+GAQLLAQARSSKS+SS +SLAKQAEAEADKAIS D KDAAA+ILKALALDLQGFKTSAL+S D+ALS A K+LT+KE+GDALFKRAE+KMSMNRR GRVDSAIDDLT+A+++ DN KA CLLGECYE+KKM+ EAK+A+E ALK+EP+ A A+DRLGS
Sbjct: 1 MWTDLLLQAAIILVTIFMFLAMHDIPKKIFTKIRYRNRADFQAKRHFVLGAQLLAQARSSKSRSSTASLAKQAEAEADKAISLDRKDAAAYILKALALDLQGFKTSALDSLDVALSPIAAKSLTDKERGDALFKRAELKMSMNRRGGRVDSAIDDLTKALELIGDNAKAFCLLGECYEMKKMKSEAKSAFEKALKVEPTSIVACTAIDRLGS 212
BLAST of CMJ_chr3_017170.2 vs. ExPASy TrEMBL
Match: A0A6P4LR92|A0A6P4LR92_GOSAR (uncharacterized protein LOC108451821 OS=Gossypium arboreum OX=29729 GN=LOC108451821 PE=4 SV=1) HSP 1 Score: 291.967 bits (746), Expect = 1.405e-97 Identity = 152/212 (71.70%), Postives = 183/212 (86.32%), Query Frame = 0 Query: 1 MWGDILLQAVLILTGVFMLLALYEIPQKFISKLRFRNRGSIQAKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLGS 212
MW D+LLQA +IL +FM LA+++IP+K +K+R+RNR QAKRHFV+GAQLLAQARSSKS+SS +SLAKQAEAEADKAIS D KDAAA+ILKALALDLQGFKTSAL+S D+ALS A K+LT+KE+GDALFKRAE+KMSMNRR GRVDSAIDDLT+A+++ DN KA CLLGECYE+KKM+ EAK+A+E ALK+EP+ A A+DRLGS
Sbjct: 1 MWTDLLLQAAIILVTIFMFLAMHDIPKKIFTKIRYRNRADFQAKRHFVLGAQLLAQARSSKSRSSTASLAKQAEAEADKAISLDRKDAAAYILKALALDLQGFKTSALDSLDVALSPIAAKSLTDKERGDALFKRAELKMSMNRRGGRVDSAIDDLTKALELIGDNAKAFCLLGECYEMKKMKSEAKSAFEKALKVEPTSIVACTAIDRLGS 212
BLAST of CMJ_chr3_017170.2 vs. Araport11
Match: AT5G65520.1 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr5:26189876-26190496 REVERSE LENGTH=206 | 201606) HSP 1 Score: 170.244 bits (430), Expect = 3.523e-53 Identity = 91/197 (46.19%), Postives = 138/197 (70.05%), Query Frame = 0 Query: 5 ILLQAVLILTGVFMLLALYEIPQKFISKLRFRNRGSIQAKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ--DDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 199
I+ A+L+LT V M A+ + Q+ ++K R ++R ++Q +R + ++LLA+AR++ KS + SLAK A EAD I+ DAA HI++ALALDL G TSAL+SFD+AL+ P +K+L+ E+ DAL KRAE+K+++NRR R+DSA++DL EAV++ D + LLGECYE K ++++A+ A+ ALK +PS
Sbjct: 7 IIQGAILVLTLV-MFWAIKYLSQRGLTKFRTKHRATLQTQRQLIQASRLLARARTTPKKSQSQSLAKTALTEADNVIAISPDDAAGHIVRALALDLLGHHTSALKSFDMALTYPRLKSLSVGERADALVKRAEMKLAVNRRR-RIDSAVEDLEEAVRLAAGTDTARLFRLLGECYEFKGLKEKAQWAFNEALKAQPS 201 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_017170.2 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_017170.2 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_017170.2 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_017170.2_cmj_v1 ID=CMJ_chr3_017170.2_cmj_v1; Name=CMJ_chr3_017170.2; organism=Citrus maxima; type=mRNA; length=639bpback to top protein sequence of CMJ_chr3_017170.2_cmj_v1 >CMJ_chr3_017170.2_cmj_v1 ID=CMJ_chr3_017170.2_cmj_v1; Name=CMJ_chr3_017170.2_cmj_v1; organism=Citrus maxima; type=polypeptide; length=213bpback to top mRNA from alignment at chr3:35106442..35108770+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2329bp; location=Sequence derived from: chr3:35106442..35108770+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:35106442..35108770+ >CMJ_chr3_017170.2_cmj_v1 ID=CMJ_chr3_017170.2_cmj_v1; Name=CMJ_chr3_017170.2; organism=Citrus maxima; type=CDS; length=639bp; location=Sequence derived from: chr3:35106442..35108770+ (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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