CMJ_chr3_017270.2
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of CMJ_chr3_017270.2 vs. ExPASy TrEMBL
Match: A0A2H5NMS1|A0A2H5NMS1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_059830 PE=4 SV=1) HSP 1 Score: 346.28 bits (887), Expect = 1.820e-120 Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0 Query: 1 MALAFTNLSWWLRSGKHQEPKISNGSSLNSSSDSGLWESENLKFPLVGRANVASSSRKVKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSVGWLEPHGPGFQSDDDADNSFAVLVPCYGHVQDDLVEGTTKNFLGAIVNIPDNYSDESKKYMEQWLSSLQN 169 MALAFTNLSWWLRSGKHQEPKISNGSSLNSSSDSGLWESENLKFPLVGRANVASSSRKVKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSVGWLEPHGPGFQSDDDADNSFAVLVPCYGHVQDDLVEGTTKNFLGAIVNIPDNYSDESKKYMEQWLSSLQN Sbjct: 1 MALAFTNLSWWLRSGKHQEPKISNGSSLNSSSDSGLWESENLKFPLVGRANVASSSRKVKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSVGWLEPHGPGFQSDDDADNSFAVLVPCYGHVQDDLVEGTTKNFLGAIVNIPDNYSDESKKYMEQWLSSLQN 169
BLAST of CMJ_chr3_017270.2 vs. ExPASy TrEMBL
Match: V4V532|V4V532_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002684mg PE=4 SV=1) HSP 1 Score: 342.043 bits (876), Expect = 1.033e-118 Identity = 167/169 (98.82%), Postives = 168/169 (99.41%), Query Frame = 0 Query: 1 MALAFTNLSWWLRSGKHQEPKISNGSSLNSSSDSGLWESENLKFPLVGRANVASSSRKVKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSVGWLEPHGPGFQSDDDADNSFAVLVPCYGHVQDDLVEGTTKNFLGAIVNIPDNYSDESKKYMEQWLSSLQN 169 MALAFTNLSWWLRSGKHQEPKISNGSSLNSSSDSGLWE +NLKFPLVGRANVASSSRKVKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSVGWLEPHGPGFQSDDDADNSFAVLVPCYGHVQDDLVEGTTKNFLGAIVNIPDNYSDESKKYMEQWLSSLQN Sbjct: 1 MALAFTNLSWWLRSGKHQEPKISNGSSLNSSSDSGLWELDNLKFPLVGRANVASSSRKVKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSVGWLEPHGPGFQSDDDADNSFAVLVPCYGHVQDDLVEGTTKNFLGAIVNIPDNYSDESKKYMEQWLSSLQN 169
BLAST of CMJ_chr3_017270.2 vs. ExPASy TrEMBL
Match: A0A6P5XSK5|A0A6P5XSK5_DURZI (uncharacterized protein LOC111285455 OS=Durio zibethinus OX=66656 GN=LOC111285455 PE=4 SV=1) HSP 1 Score: 291.197 bits (744), Expect = 1.540e-98 Identity = 139/169 (82.25%), Postives = 154/169 (91.12%), Query Frame = 0 Query: 1 MALAFTNLSWWLRSGKHQEPKISNGSSLNSSSDSGLWESENLKFPLVGRANVASSSRKVKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSVGWLEPHGPGFQSDDDADNSFAVLVPCYGHVQDDLVEGTTKNFLGAIVNIPDNYSDESKKYMEQWLSSLQN 169 MA+AFT LSWWL SGKHQEP+I+NG+SL+SS DSGLWES+NLKFPLV RAN+ASSSR+ KRKW SREERKIDREYDVVLVPSDGGCVSGSESD SDYS+GWLEPHGPGFQSDDD+D SFAVLVPCYGH QDD+VE + N LGAIVNIP+NYS ESKKY+EQWLSSL+ Sbjct: 1 MAVAFTYLSWWLWSGKHQEPRIANGASLSSSPDSGLWESDNLKFPLVKRANMASSSRRAKRKWHSREERKIDREYDVVLVPSDGGCVSGSESDCSDYSIGWLEPHGPGFQSDDDSDKSFAVLVPCYGHSQDDMVEDSKNNVLGAIVNIPNNYSTESKKYVEQWLSSLRT 169
BLAST of CMJ_chr3_017270.2 vs. ExPASy TrEMBL
Match: A0A2P5F1E4|A0A2P5F1E4_TREOI (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_126460 PE=4 SV=1) HSP 1 Score: 281.567 bits (719), Expect = 7.727e-95 Identity = 138/170 (81.18%), Postives = 150/170 (88.24%), Query Frame = 0 Query: 1 MALAFTNLSWWLRSGKHQEPKISNGSSLNSSSDSGLWESENLKFPLVGRANVASSSRKVKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSVGWLEPHGPGFQSDDDADNSFAVLVPCYGHVQDDLVEGTTKNFLGAIVNIPDNYSDESKKYMEQWLSSLQNI 170 MA+AFTNLSWWL SGKHQEP++SNGSSLNS+ DSG WES+ LKFPLV RANVASSSR+VKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSD+SVGWLEPHGP FQSDDD+DNSFAVLVPCYG +++VE T N L A+ IPD YS ESKK MEQWLSSLQN Sbjct: 1 MAVAFTNLSWWLWSGKHQEPRLSNGSSLNSAPDSGTWESDTLKFPLVQRANVASSSRRVKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDWSVGWLEPHGPAFQSDDDSDNSFAVLVPCYGRGLEEMVEDTKNNILNAVGIIPDVYSAESKKNMEQWLSSLQNC 170
BLAST of CMJ_chr3_017270.2 vs. ExPASy TrEMBL
Match: B9RJX7|B9RJX7_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1039590 PE=4 SV=1) HSP 1 Score: 280.796 bits (717), Expect = 1.508e-94 Identity = 135/169 (79.88%), Postives = 148/169 (87.57%), Query Frame = 0 Query: 1 MALAFTNLSWWLRSGKHQEPKISNGSSLNSSSDSGLWESENLKFPLVGRANVASSSRKVKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSVGWLEPHGPGFQSDDDADNSFAVLVPCYGHVQDDLVEGTTKNFLGAIVNIPDNYSDESKKYMEQWLSSLQN 169 MA+AFTNLSWWL SGKHQ+P+I N SSLNS DS LWES+NLKFPLV RANVASSSR+VKRKW SREERKIDREYDVVLVPSDGGCVSGSESDDSDYS+GWLEPHG GFQSDDD D+SFAVLVPCYG QD + E + N GAIVNI D +S+ESK+YME+WLSSLQN Sbjct: 1 MAVAFTNLSWWLWSGKHQDPRIPNASSLNSRPDSDLWESDNLKFPLVRRANVASSSRRVKRKWHSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSIGWLEPHGAGFQSDDDMDSSFAVLVPCYGRAQDKVFEDSKNNMFGAIVNIQDGFSNESKRYMEEWLSSLQN 169
BLAST of CMJ_chr3_017270.2 vs. ExPASy TrEMBL
Match: A0A6P6B7D4|A0A6P6B7D4_DURZI (uncharacterized protein LOC111315530 isoform X1 OS=Durio zibethinus OX=66656 GN=LOC111315530 PE=4 SV=1) HSP 1 Score: 278.485 bits (711), Expect = 1.460e-93 Identity = 133/168 (79.17%), Postives = 149/168 (88.69%), Query Frame = 0 Query: 1 MALAFTNLSWWLRSGKHQEPKISNGSSLNSSSDSGLWESENLKFPLVGRANVASSSRKVKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSVGWLEPHGPGFQSDDDADNSFAVLVPCYGHVQDDLVEGTTKNFLGAIVNIPDNYSDESKKYMEQWLSSLQ 168 MA+AFT LSWWL SGKHQ+P+I+NGSSLNS DS LWES+NL FPLV AN+ASSSR+VKRKW SREERKIDREYDVVLV SDGGCVSGSESD SDYS+GWLEPHGPGFQS+DD+DNSFAVLVPCYGH QD+++E + N L AIVNI DN+S ESKKY+EQWLSSLQ Sbjct: 1 MAVAFTQLSWWLWSGKHQDPRIANGSSLNSLPDSSLWESDNLNFPLVKTANMASSSRRVKRKWHSREERKIDREYDVVLVSSDGGCVSGSESDGSDYSIGWLEPHGPGFQSEDDSDNSFAVLVPCYGHSQDNMMEDSKNNILAAIVNISDNFSAESKKYVEQWLSSLQ 168
BLAST of CMJ_chr3_017270.2 vs. ExPASy TrEMBL
Match: A0A6J1AF15|A0A6J1AF15_9ROSI (uncharacterized protein LOC110417387 isoform X1 OS=Herrania umbratica OX=108875 GN=LOC110417387 PE=4 SV=1) HSP 1 Score: 276.944 bits (707), Expect = 5.875e-93 Identity = 143/169 (84.62%), Postives = 155/169 (91.72%), Query Frame = 0 Query: 1 MALAFTNLSWWLRSGKHQEPKISNGSSLNSSSDSGLWESENLKFPLVGRANVASSSRKVKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSVGWLEPHGPGFQSDDDADNSFAVLVPCYGHVQDDLVEGTTKNFLGAIVNIPDNYSDESKKYMEQWLSSLQN 169 MA+AFT+LSWWL SGKHQEP+I+NGSSL+SS DSGLWES+NLKFPLV RAN+ASSSR+VKRKW SREERKIDREYDVVLVPSDGGCVSGSESD SDYS+GWLEPHGPGFQSDDD+DNSFAVLVPCYGH QD LVE + LGAIVNIPDNYS ESKKY+EQWLSSLQ Sbjct: 1 MAVAFTHLSWWLWSGKHQEPRIANGSSLSSSPDSGLWESDNLKFPLVKRANMASSSRRVKRKWHSREERKIDREYDVVLVPSDGGCVSGSESDGSDYSIGWLEPHGPGFQSDDDSDNSFAVLVPCYGHSQDKLVEDSKHKILGAIVNIPDNYSAESKKYVEQWLSSLQT 169
BLAST of CMJ_chr3_017270.2 vs. ExPASy TrEMBL
Match: A0A061FDP6|A0A061FDP6_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_034514 PE=4 SV=1) HSP 1 Score: 276.944 bits (707), Expect = 5.875e-93 Identity = 143/169 (84.62%), Postives = 155/169 (91.72%), Query Frame = 0 Query: 1 MALAFTNLSWWLRSGKHQEPKISNGSSLNSSSDSGLWESENLKFPLVGRANVASSSRKVKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSVGWLEPHGPGFQSDDDADNSFAVLVPCYGHVQDDLVEGTTKNFLGAIVNIPDNYSDESKKYMEQWLSSLQN 169 MA+AFT+LSWWL SGKHQEP+I+NGSSL+SS DSGLWES+NLKFPLV RAN+ASSSR+VKRKW SREERKIDREYDVVLVPSDGGCVSGSESD SDYS+GWLEPHGPGFQSDDD+DNSFAVLVPCYGH QD LVE + LGAIVNIPDNYS ESKKY+EQWLSSLQ Sbjct: 1 MAVAFTHLSWWLWSGKHQEPRIANGSSLSSSPDSGLWESDNLKFPLVKRANMASSSRRVKRKWHSREERKIDREYDVVLVPSDGGCVSGSESDGSDYSIGWLEPHGPGFQSDDDSDNSFAVLVPCYGHSQDKLVEDSKHKILGAIVNIPDNYSAESKKYVEQWLSSLQT 169
BLAST of CMJ_chr3_017270.2 vs. ExPASy TrEMBL
Match: A0A2P5BLU5|A0A2P5BLU5_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_228150 PE=4 SV=1) HSP 1 Score: 275.404 bits (703), Expect = 2.050e-92 Identity = 135/170 (79.41%), Postives = 149/170 (87.65%), Query Frame = 0 Query: 1 MALAFTNLSWWLRSGKHQEPKISNGSSLNSSSDSGLWESENLKFPLVGRANVASSSRKVKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSVGWLEPHGPGFQSDDDADNSFAVLVPCYGHVQDDLVEGTTKNFLGAIVNIPDNYSDESKKYMEQWLSSLQNI 170 MA+AFTNLSWWL SGKHQEP++SNGSSL+S+ DSG WES+ LKFPLV RANVASSSR+VKRKW SREERKIDREYDVVLVPSDGGCVSGSESDDSD+SVGWLEPHGPGFQSDDD+DNSFAVLVPCYG +++V T N L A+ IPD YS ESKK +EQWLSSLQN Sbjct: 1 MAVAFTNLSWWLWSGKHQEPRLSNGSSLSSAPDSGTWESDTLKFPLVQRANVASSSRRVKRKWHSREERKIDREYDVVLVPSDGGCVSGSESDDSDWSVGWLEPHGPGFQSDDDSDNSFAVLVPCYGRGLEEMVADTKNNILNAVGIIPDVYSAESKKNLEQWLSSLQNC 170
BLAST of CMJ_chr3_017270.2 vs. ExPASy TrEMBL
Match: A0A5D2DQ14|A0A5D2DQ14_GOSDA (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D01G148900v1 PE=4 SV=1) HSP 1 Score: 275.404 bits (703), Expect = 2.073e-92 Identity = 133/168 (79.17%), Postives = 148/168 (88.10%), Query Frame = 0 Query: 1 MALAFTNLSWWLRSGKHQEPKISNGSSLNSSSDSGLWESENLKFPLVGRANVASSSRKVKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSVGWLEPHGPGFQSDDDADNSFAVLVPCYGHVQDDLVEGTTKNFLGAIVNIPDNYSDESKKYMEQWLSSLQ 168 MALAFT+LSWWL SGKHQEP+ NGSSL+SS D+GLWES+NLKFP + RAN+ASSSR+VKRK SREERKIDREYDVVLVPSDGGCVSGSESD SDYS+GWLEPHGPGF SDD +DNSFAVLVPCY H +D++V + LGAIVNIPDNYS ESKKY+EQWLSSLQ Sbjct: 1 MALAFTHLSWWLWSGKHQEPRTPNGSSLSSSPDTGLWESDNLKFPRIKRANMASSSRRVKRKRHSREERKIDREYDVVLVPSDGGCVSGSESDGSDYSIGWLEPHGPGFHSDDGSDNSFAVLVPCYEHSEDNMVVDSKNKILGAIVNIPDNYSAESKKYVEQWLSSLQ 168
BLAST of CMJ_chr3_017270.2 vs. Araport11
Match: AT4G38060.4 (| hypothetical protein | Chr4:17873709-17874379 REVERSE LENGTH=136 | 201606) HSP 1 Score: 83.1889 bits (204), Expect = 1.109e-20 Identity = 58/138 (42.03%), Postives = 71/138 (51.45%), Query Frame = 0 Query: 38 ESENLKFPL-VGRANVASSSRKVKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSVGWLEPHGPGFQSDDDA-DNSFAVLVPCYGHVQDDLVEGTTKN---FLGAIVNIPDNYSDESKKYMEQWLSSLQNI 170 E+E LKFP + R N KRK E V +V DG ++SVGW EPHGP FQSDD+ D F VLVPCY V VEG++ N L A+ N+P+ + K YMEQWLSSLQ + Sbjct: 21 ETEALKFPTKIARVN--------KRKELELESFGSSGSESVDVVAGDG----------PEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCYRAV----VEGSSNNNNQLLSAVKNLPNGLPPDGKNYMEQWLSSLQKL 136
BLAST of CMJ_chr3_017270.2 vs. Araport11
Match: AT4G38060.3 (| hypothetical protein | Chr4:17873709-17874379 REVERSE LENGTH=136 | 201606) HSP 1 Score: 83.1889 bits (204), Expect = 1.109e-20 Identity = 58/138 (42.03%), Postives = 71/138 (51.45%), Query Frame = 0 Query: 38 ESENLKFPL-VGRANVASSSRKVKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSVGWLEPHGPGFQSDDDA-DNSFAVLVPCYGHVQDDLVEGTTKN---FLGAIVNIPDNYSDESKKYMEQWLSSLQNI 170 E+E LKFP + R N KRK E V +V DG ++SVGW EPHGP FQSDD+ D F VLVPCY V VEG++ N L A+ N+P+ + K YMEQWLSSLQ + Sbjct: 21 ETEALKFPTKIARVN--------KRKELELESFGSSGSESVDVVAGDG----------PEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCYRAV----VEGSSNNNNQLLSAVKNLPNGLPPDGKNYMEQWLSSLQKL 136
BLAST of CMJ_chr3_017270.2 vs. Araport11
Match: AT4G38060.2 (| hypothetical protein | Chr4:17873709-17874379 REVERSE LENGTH=136 | 201606) HSP 1 Score: 83.1889 bits (204), Expect = 1.109e-20 Identity = 58/138 (42.03%), Postives = 71/138 (51.45%), Query Frame = 0 Query: 38 ESENLKFPL-VGRANVASSSRKVKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSVGWLEPHGPGFQSDDDA-DNSFAVLVPCYGHVQDDLVEGTTKN---FLGAIVNIPDNYSDESKKYMEQWLSSLQNI 170 E+E LKFP + R N KRK E V +V DG ++SVGW EPHGP FQSDD+ D F VLVPCY V VEG++ N L A+ N+P+ + K YMEQWLSSLQ + Sbjct: 21 ETEALKFPTKIARVN--------KRKELELESFGSSGSESVDVVAGDG----------PEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCYRAV----VEGSSNNNNQLLSAVKNLPNGLPPDGKNYMEQWLSSLQKL 136
BLAST of CMJ_chr3_017270.2 vs. Araport11
Match: AT5G65480.1 (| hypothetical protein | Chr5:26176827-26177434 FORWARD LENGTH=153 | 201606) HSP 1 Score: 64.6994 bits (156), Expect = 1.822e-13 Identity = 36/89 (40.45%), Postives = 49/89 (55.06%), Query Frame = 0 Query: 85 GCVSGSESDDSDYSVGWLEPHGPGFQSDDDADNSFAVLVPCYGHVQDDLVEGTTKNFLGAIVNIPDNYSDESK---KYMEQWLSSLQNI 170 G V E DD ++S+GW+EPHGPGF+++DD F VLVP Y V D G+ IP+ + + K MEQWLSS+ + Sbjct: 76 GNVVFPEPDDPEWSIGWVEPHGPGFKAEDDDCGGFVVLVPLYKKVMD-----------GSGNQIPNGFFSPAAPDGKNMEQWLSSMGKL 153
BLAST of CMJ_chr3_017270.2 vs. Araport11
Match: AT4G38060.1 (| hypothetical protein | Chr4:17874002-17874379 REVERSE LENGTH=125 | 201606) HSP 1 Score: 60.077 bits (144), Expect = 5.779e-12 Identity = 47/118 (39.83%), Postives = 58/118 (49.15%), Query Frame = 0 Query: 38 ESENLKFPL-VGRANVASSSRKVKRKWQSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSVGWLEPHGPGFQSDDDA-DNSFAVLVPCYGHVQDDLVEGTTKN---FLGAIVNIPD 150 E+E LKFP + R N KRK E V +V DG ++SVGW EPHGP FQSDD+ D F VLVPCY V VEG++ N L A+ N+P+ Sbjct: 21 ETEALKFPTKIARVN--------KRKELELESFGSSGSESVDVVAGDG----------PEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCYRAV----VEGSSNNNNQLLSAVKNLPN 116 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_017270.2 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_017270.2 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_017270.2 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_017270.2_cmj_v1 ID=CMJ_chr3_017270.2_cmj_v1; Name=CMJ_chr3_017270.2; organism=Citrus maxima; type=mRNA; length=513bpback to top protein sequence of CMJ_chr3_017270.2_cmj_v1 >CMJ_chr3_017270.2_cmj_v1 ID=CMJ_chr3_017270.2_cmj_v1; Name=CMJ_chr3_017270.2_cmj_v1; organism=Citrus maxima; type=polypeptide; length=171bpback to top mRNA from alignment at chr3:35159298..35162833- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=3536bp; location=Sequence derived from: chr3:35159298..35162833- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:35159298..35162833- >CMJ_chr3_017270.2_cmj_v1 ID=CMJ_chr3_017270.2_cmj_v1; Name=CMJ_chr3_017270.2; organism=Citrus maxima; type=CDS; length=513bp; location=Sequence derived from: chr3:35159298..35162833- (Citrus maximaback to top |