CMJ_chr3_018010.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_018010.1 vs. ExPASy TrEMBL
Match: V4T6V6|V4T6V6_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002813mg PE=4 SV=1) HSP 1 Score: 231.106 bits (588), Expect = 1.036e-75 Identity = 134/147 (91.16%), Postives = 136/147 (92.52%), Query Frame = 0 Query: 1 MAHSGFVVIVLLALIAGSAVAQAPGPAPTRSPATKPSSPAPKAAAPSPSKSHAQSPSPATATPTPVAAPTLSPPSPPVSEAPGSTPVSEAPGSTPVSSSGVPLSPTGAPASTPTGAPASTPGNGVALNRVAVGGYLSGFVATVALFM 147 MAHSGFVVIVLLALIAGSAVAQAPGPAPTRSPATK SSPAPKAAAPSPSKSHAQSPSPATATPTPVAAPTLSPPSPPV SEAPG+ PVSSSG+PLSPTGAPASTPTGAPASTPGNGVALNRVAVGGYLSGFVATVALFM Sbjct: 1 MAHSGFVVIVLLALIAGSAVAQAPGPAPTRSPATKTSSPAPKAAAPSPSKSHAQSPSPATATPTPVAAPTLSPPSPPV---------SEAPGNAPVSSSGLPLSPTGAPASTPTGAPASTPGNGVALNRVAVGGYLSGFVATVALFM 138
BLAST of CMJ_chr3_018010.1 vs. ExPASy TrEMBL
Match: A0A067H0F9|A0A067H0F9_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032017mg PE=4 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 1.535e-42 Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 0 Query: 1 MAHSGFVVIVLLALIAGSAVAQAPGPAPTRSPATKPSSPAPKAAAPSPSKSHAQSPSPATATPTPVAAPTLSPPSPPVSEAPGS 84 MAHSGFVVIVLLALIAGSAVAQAPGPAPTRSPATK SSPAPKAAAPSPSKSHAQSPSPATATPTPVAAPTLSPPSPPVSEAPG+ Sbjct: 1 MAHSGFVVIVLLALIAGSAVAQAPGPAPTRSPATKTSSPAPKAAAPSPSKSHAQSPSPATATPTPVAAPTLSPPSPPVSEAPGT 84
BLAST of CMJ_chr3_018010.1 vs. ExPASy TrEMBL
Match: A0A067H015|A0A067H015_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032017mg PE=4 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.132e-30 Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = 0 Query: 1 MAHSGFVVIVLLALIAGSAVAQAPGPAPTRSPATKPSSPAPKAAAPSPSKSHAQSPSPATATPTPVAAPTLSPPSPPVSEAPGS 84 MAHSGFVVIVLLALIAGSAVAQAPGPAPTRSPATK SSPAPKAAAPSPSKSHAQSPSPATATPTPVAAPTLSPPSPPVSEAPGS Sbjct: 1 MAHSGFVVIVLLALIAGSAVAQAPGPAPTRSPATKTSSPAPKAAAPSPSKSHAQSPSPATATPTPVAAPTLSPPSPPVSEAPGS 84
BLAST of CMJ_chr3_018010.1 vs. ExPASy TrEMBL
Match: A0A5C7H6R7|A0A5C7H6R7_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_021907 PE=4 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.455e-20 Identity = 72/146 (49.32%), Postives = 86/146 (58.90%), Query Frame = 0 Query: 1 MAHSGFVVIVLLALIAGSAVAQAPGPAPTRSPATKPSSPAPKAAAPSPSKSHAQSPSPATATPTPVAAPTLSPPSPPVSEAPGSTPVSEAPGSTPVSSSGVPLSPTG-APASTPTGAPASTPGNGVALNRVAVGGYLSGFVATVAL 145 MA+S FV ++LL+L+A SA AQAPGPAPTRSP SPAPK+A P+P AQ+P TP+P A VS P STP S P P+G +P P GAP+S PGNG ALNR+AV GY+SG ATVA Sbjct: 1 MAYSSFVCVLLLSLVAASAFAQAPGPAPTRSPTASAPSPAPKSATPAP----AQAPKVDAPTPSPAAT---------------PPSVSNPPTSTPTVSPPAPNGPSGNSPTGNPAGAPSSPPGNGAALNRIAVAGYVSGLFATVAF 127
BLAST of CMJ_chr3_018010.1 vs. ExPASy TrEMBL
Match: A0A1J3HWB1|A0A1J3HWB1_NOCCA (Classical arabinogalactan protein 5 OS=Noccaea caerulescens OX=107243 GN=LE_TR10764_c0_g1_i1_g.35772 PE=4 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.767e-12 Identity = 62/159 (38.99%), Postives = 85/159 (53.46%), Query Frame = 0 Query: 1 MAHSGFVVIVLLALIAGSAVAQAPGPAPTRSPATKPSSPAPKAAAPSPSKS-HAQSPSPATATPTPVAAPTLSPPSPPVSEAPGSTPVSEAPGSTPVSSSGVP-----LSPTGAP-ASTPTG-----APASTPGNGVALNRVAVGGYLSGFVATVALFM 147 MA+ VV + L+L+A SAVAQAPGPAPT S P A P P++S A +P+P+T T +PPS P P + PVS+ P +P +++ +P LSP GAP P+G +P + N ++NRVAV G +G ALFM Sbjct: 1 MAYKSVVVFLFLSLVASSAVAQAPGPAPTLS---------PLPATPQPAQSPRASTPAPSTVT---------NPPSLP----PTTAPVSQPPADSPTTTTSLPAPPTSLSPAGAPGTDVPSGPAQSMSPTTDSPNAASMNRVAVAGSFAGVFLVAALFM 137
BLAST of CMJ_chr3_018010.1 vs. ExPASy TrEMBL
Match: A0A1J3CKK3|A0A1J3CKK3_NOCCA (Classical arabinogalactan protein 5 OS=Noccaea caerulescens OX=107243 GN=GA_TR8401_c0_g1_i1_g.27175 PE=4 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.245e-10 Identity = 59/154 (38.31%), Postives = 82/154 (53.25%), Query Frame = 0 Query: 1 MAHSGFVVIVLLALIAGSAVAQAPGPAPTRSPATKPSSPAPKAAAPSPSKS-HAQSPSPATATPTPVAAPTLSPPSPPVSEAPGSTPVSEAPGSTPVSSSGVPLSPTGAP-ASTPTG-----APASTPGNGVALNRVAVGGYLSGFVATVALFM 147 MA+ VV + L L+A SAVAQAPGPAPT S P A P P++S A +P+P+T T +PPS P + AP S P +++P +T + + LSP GAP P+G +P + N ++NRVAV G +G AL + Sbjct: 1 MAYKSVVVFLFLTLVASSAVAQAPGPAPTLS---------PLPATPQPAQSPRASTPAPSTVT---------NPPSLPPTTAPVSQPPADSPTTTSLPAPPTSLSPAGAPGTDVPSGPAQSMSPTTDSPNAASMNRVAVAGSFAGVFLVAALLL 136
BLAST of CMJ_chr3_018010.1 vs. ExPASy TrEMBL
Match: A0A6J0M5N9|A0A6J0M5N9_RAPSA (classical arabinogalactan protein 10-like OS=Raphanus sativus OX=3726 GN=LOC108839085 PE=4 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 6.253e-10 Identity = 67/150 (44.67%), Postives = 85/150 (56.67%), Query Frame = 0 Query: 1 MAHSGFVVIVLLALIAGSAVAQAPGPAPTRSP--ATKPSSPAPKAAAPSPSKSHAQSPSPATATPTPVAAPTLSPPSPPVSEAPGSTPVSEAPGSTPVSSSGVPLSPTGAP-ASTPTGAPASTPGNGVALNRVAVGGYLSGFVATVALFM 147 MA + V +LLALI SA+AQAPGP+PTRSP AT P S P+ AAP+PS++ A PS TP AAPT SPP P ST S P + P S L+P GAP A+ P+G STP + ++ G +L GF+ AL + Sbjct: 1 MASNSIAVFLLLALIVSSAIAQAPGPSPTRSPLPATPPISQPPRTAAPTPSRATAPPPSV-----TPTAAPT----SPPAGS-PTSTVAS--PPAPPTS-----LTPDGAPDANAPSGPTGSTPNDNNNAAALSAGSFL-GFLFVAALLL 132 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_018010.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 7 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_018010.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_018010.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_018010.1_cmj_v1 ID=CMJ_chr3_018010.1_cmj_v1; Name=CMJ_chr3_018010.1; organism=Citrus maxima; type=mRNA; length=444bpback to top protein sequence of CMJ_chr3_018010.1_cmj_v1 >CMJ_chr3_018010.1_cmj_v1 ID=CMJ_chr3_018010.1_cmj_v1; Name=CMJ_chr3_018010.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=148bpback to top mRNA from alignment at chr3:35648385..35648828- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=444bp; location=Sequence derived from: chr3:35648385..35648828- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:35648385..35648828- >CMJ_chr3_018010.1_cmj_v1 ID=CMJ_chr3_018010.1_cmj_v1; Name=CMJ_chr3_018010.1; organism=Citrus maxima; type=CDS; length=444bp; location=Sequence derived from: chr3:35648385..35648828- (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|