CMJ_chr3_018080.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr3_018080.1
Unique Name	CMJ_chr3_018080.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	210

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cmjfhsR178	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmjfhsR203	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmcmjL040	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmcmjL206	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmjcsnR264	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjcsnR272	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjcsnR289	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjcsnR296	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
ccrcmjL223	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL304	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL565	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL657	Citrus australasica CRC3672 genome v1	Citrus australasica
cmjcmxR193	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmxR233	Citrus maxima cv. XGF genome v1.0	Citrus maxima
caacmjL256	Citrus australasica cv. AZM genome v1.0	Citrus australasica
caacmjL612	Citrus australasica cv. AZM genome v1.0	Citrus australasica
chhcmjL118	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
chhcmjL336	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
cmjcraR245	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR257	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR272	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cchcmjL021	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
cchcmjL108	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
cmjcrmR239	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR246	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR260	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata

Orthologs


Gene/Transcript	Assembly	Species
Fh3g28330.1	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
EVM_prediction_chr2.1_tiancheng.1693	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
Chh209390.1	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
huyou00011059-RA	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
g8222.t1_h2	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
Egl199200.1	Citrus australasica cv. AZM genome v1.0	Citrus australasica
g8873.t1	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
Cau_v1.primary_g15703.t1	Citrus australasica CRC3672 genome v1	Citrus australasica

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
XGF024990.1	Citrus maxima cv. XGF genome v1.0	Citrus maxima
Cg3g014630.1	Citrus maxima (C. grandis) genome v1.0	Citrus maxima

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr3_018080	CMJ_chr3_018080_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_018080.1.exon2	CMJ_chr3_018080.1.exon2_cmj_v1	Citrus maxima	exon
CMJ_chr3_018080.1.exon1	CMJ_chr3_018080.1.exon1_cmj_v1	Citrus maxima	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_018080.1.cds.2	CMJ_chr3_018080.1.cds.2_cmj_v1	Citrus maxima	CDS
CMJ_chr3_018080.1.cds.1	CMJ_chr3_018080.1.cds.1_cmj_v1	Citrus maxima	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_018080.1_cmj_v1	CMJ_chr3_018080.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr3_018080.1_cmj_v1	CMJ_chr3_018080.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

The following BLAST results are available for this feature:

BLAST of CMJ_chr3_018080.1 vs.
BLAST of CMJ_chr3_018080.1 vs.
BLAST of CMJ_chr3_018080.1 vs.

BLAST of CMJ_chr3_018080.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_018080.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_018080.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:35701517..35702071-
coding sequence from alignment at chr3:35701517..35702071-

mRNA sequence

>CMJ_chr3_018080.1_cmj_v1 ID=CMJ_chr3_018080.1_cmj_v1; Name=CMJ_chr3_018080.1; organism=Citrus maxima; type=mRNA; length=210bp
ATGAAGAACCACATCCCGGGCGCCGCTACTACTGCTCGTTGCCTGCTACT
GCTGCTTGCCGCCGTCGCTTCTCGTATCGGACGTAAGGCATCAGTATCAC
AATCCAACATGAGCCACGTGGCTTGCAATTTACGGCCAAGCGAGATTGTG
ACTTGCGAAAATGCTACTAGTGTTTGGTTTGAATGGAAGAATCAAGCGGC
AGTGGAGTAG

protein sequence of CMJ_chr3_018080.1_cmj_v1

>CMJ_chr3_018080.1_cmj_v1 ID=CMJ_chr3_018080.1_cmj_v1; Name=CMJ_chr3_018080.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=70bp
MKNHIPGAATTARCLLLLLAAVASRIGRKASVSQSNMSHVACNLRPSEIV
TCENATSVWFEWKNQAAVE*

mRNA from alignment at chr3:35701517..35702071-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=555bp; location=Sequence derived from: chr3:35701517..35702071- (Citrus maxima
ATGAAGAACCACATCCCGGGCGCCGCTACTACTGCTCGTTGCCTGCTACT
GCTGCTTGCCGCCGTCGCTTCTCGTATCGGACGTATCAATTAGATCCAAT
TATAAATAAATTAAAAATAAAAAGGAAAAGAAGGGGTCACATGAAATTTG
ACAGAAAAAAAGACAAAATGAGAAGTATATTACCCCTGTGGCAACATAAA
CGGGGTTCTTTTTTTTAAATCTATTAATAACATTTTCACTTTAGCAAACT
TATTATTACCGAAATTTTTTTTAAATATAATATTAAGAAAATGACCGCAA
TTTGTAGACCTACAGAATTACAAGTCTGCGCCTTTATTAACACAACCACC
CTTGTTTGTTTTTTTTTTTTTTTTCTAATTATTCTCATTAAGTTCATTTC
AGAGGCGACTTTTGACGTGTTTAATAGGTAAGGCATCAGTATCACAATCC
AACATGAGCCACGTGGCTTGCAATTTACGGCCAAGCGAGATTGTGACTTG
CGAAAATGCTACTAGTGTTTGGTTTGAATGGAAGAATCAAGCGGCAGTGG
AGTAG

Coding sequence (CDS) from alignment at chr3:35701517..35702071-

>CMJ_chr3_018080.1_cmj_v1 ID=CMJ_chr3_018080.1_cmj_v1; Name=CMJ_chr3_018080.1; organism=Citrus maxima; type=CDS; length=210bp; location=Sequence derived from: chr3:35701517..35702071- (Citrus maxima
ATGAAGAACCACATCCCGGGCGCCGCTACTACTGCTCGTTGCCTGCTACT
GCTGCTTGCCGCCGTCGCTTCTCGTATCGGACGTAAGGCATCAGTATCAC
AATCCAACATGAGCCACGTGGCTTGCAATTTACGGCCAAGCGAGATTGTG
ACTTGCGAAAATGCTACTAGTGTTTGGTTTGAATGGAAGAATCAAGCGGC
AGTGGAGTAG