CMJ_chr3_018260.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_018260.1 vs. ExPASy TrEMBL
Match: A0A2H5NNG1|A0A2H5NNG1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_060620 PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.640e-36 Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 0 Query: 76 FNSLTAPLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAGEV 146 + + TAPLG PNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAP+EAASACPGEYDKGAYPGYAGEV Sbjct: 187 YGTQTAPLGPPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPLEAASACPGEYDKGAYPGYAGEV 257 HSP 2 Score: 67.3958 bits (163), Expect = 1.838e-10 Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 Query: 41 VGSCLGARKLTSLYQPSPIAMTYHKGALLEGNL 73 + SCLGARKLTSLYQPSPIAMTYHKGALLEGNL Sbjct: 13 ISSCLGARKLTSLYQPSPIAMTYHKGALLEGNL 45
BLAST of CMJ_chr3_018260.1 vs. ExPASy TrEMBL
Match: V4V5F1|V4V5F1_CITCL (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10003257mg PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 5.083e-36 Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0 Query: 76 FNSLTAPLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAGE 145 + + TAPLG PNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAP+EAASACPGEYDKGAYPGYAGE Sbjct: 155 YGTQTAPLGPPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPLEAASACPGEYDKGAYPGYAGE 224
BLAST of CMJ_chr3_018260.1 vs. ExPASy TrEMBL
Match: A0A2N9F9D1|A0A2N9F9D1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11665 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.229e-28 Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0 Query: 80 TAPLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAGEV 146 T PLG+PNGDVG+DGMI+NIA L AGTVTNPFG GYF+GSV AP+EAASACPG Y KGAYPGYAGE+ Sbjct: 166 TTPLGAPNGDVGLDGMIVNIASLLAGTVTNPFGNGYFLGSVGAPLEAASACPGVYGKGAYPGYAGEL 232
BLAST of CMJ_chr3_018260.1 vs. ExPASy TrEMBL
Match: A0A7J7GP02|A0A7J7GP02_CAMSI (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_020171 PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.590e-28 Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0 Query: 80 TAPLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAGEV 146 TAPLG+PN DVGVDGM++NIA L AGTVTNPFG GYF GS +APVEAASACPG Y KGAYPGYAGE+ Sbjct: 170 TAPLGAPNEDVGVDGMVVNIASLLAGTVTNPFGNGYFQGSADAPVEAASACPGAYGKGAYPGYAGEL 236
BLAST of CMJ_chr3_018260.1 vs. ExPASy TrEMBL
Match: A0A5C7H8C4|A0A5C7H8C4_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_021931 PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.334e-27 Identity = 54/67 (80.60%), Postives = 58/67 (86.57%), Query Frame = 0 Query: 80 TAPLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAGEV 146 TAPLG+PNGDVGVDGMI+NIA L AG VTNPFG GYFVGS EAP+E ASAC G Y KGAYPGYAGE+ Sbjct: 215 TAPLGAPNGDVGVDGMIVNIASLLAGAVTNPFGNGYFVGSAEAPMEVASACTGVYGKGAYPGYAGEL 281
BLAST of CMJ_chr3_018260.1 vs. ExPASy TrEMBL
Match: W9R7Q5|W9R7Q5_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012729 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.851e-27 Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = 0 Query: 82 PLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAGE 145 PLG+PNGDVGVDGMI+NIA L AGT+TNPFG GY++GS +AP+EAASACPG Y KGAYPGYAGE Sbjct: 205 PLGAPNGDVGVDGMIVNIASLLAGTITNPFGNGYYLGSADAPLEAASACPGLYGKGAYPGYAGE 268
BLAST of CMJ_chr3_018260.1 vs. ExPASy TrEMBL
Match: A0A4S4DFC2|A0A4S4DFC2_CAMSI (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_002870 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.886e-27 Identity = 54/67 (80.60%), Postives = 58/67 (86.57%), Query Frame = 0 Query: 80 TAPLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAGEV 146 TAPLG+PN DVGVDGM+ NIA L AGTVTNPFG GYF GS +APVEAASACPG Y KGAYPGYAGE+ Sbjct: 204 TAPLGAPNEDVGVDGMVENIASLLAGTVTNPFGNGYFQGSADAPVEAASACPGAYGKGAYPGYAGEL 270
BLAST of CMJ_chr3_018260.1 vs. ExPASy TrEMBL
Match: M5XQ23|M5XQ23_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_1G520500 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.370e-27 Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 0 Query: 80 TAPLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAG 144 T PLG+PNGDVGVDGM++NIA L AG+VTNPFG GY++GS EAP+EAASACPG Y KGAYPGYAG Sbjct: 164 TTPLGAPNGDVGVDGMVVNIASLLAGSVTNPFGSGYYMGSAEAPLEAASACPGVYGKGAYPGYAG 228
BLAST of CMJ_chr3_018260.1 vs. ExPASy TrEMBL
Match: A0A7N2N5W0|A0A7N2N5W0_QUELO (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.792e-27 Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0 Query: 80 TAPLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAGEV 146 T PLG+PNGDVG+DGMI+N+A L AGTVTNPFG GYF+GS AP+EAASACPG Y KGAYPGYAGE+ Sbjct: 204 TTPLGAPNGDVGLDGMIVNLASLLAGTVTNPFGNGYFIGSAGAPLEAASACPGVYGKGAYPGYAGEL 270
BLAST of CMJ_chr3_018260.1 vs. ExPASy TrEMBL
Match: A0A6J1AD88|A0A6J1AD88_9ROSI (protein EXORDIUM-like 2 OS=Herrania umbratica OX=108875 GN=LOC110416954 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 3.608e-27 Identity = 54/67 (80.60%), Postives = 58/67 (86.57%), Query Frame = 0 Query: 80 TAPLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAGEV 146 TAPLG+PNGDVGVDGMIINIA L AGTVTNPFG GYF+GS A +E ASACPG Y KGAYPGYAGE+ Sbjct: 211 TAPLGAPNGDVGVDGMIINIASLLAGTVTNPFGNGYFLGSAGAELEVASACPGVYGKGAYPGYAGEL 277
BLAST of CMJ_chr3_018260.1 vs. ExPASy Swiss-Prot
Match: PHI1_TOBAC (Protein PHOSPHATE-INDUCED 1 OS=Nicotiana tabacum OX=4097 GN=PHI-1 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 5.484e-26 Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 0 Query: 82 PLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAGEV 146 PL +PN DVGVDGM+IN+A L AGT TNPFG GY+ G +AP+EAASACPG Y KGAYPGYAG++ Sbjct: 212 PLVAPNNDVGVDGMVINLASLLAGTATNPFGNGYYQGEADAPLEAASACPGVYAKGAYPGYAGDL 276
BLAST of CMJ_chr3_018260.1 vs. ExPASy Swiss-Prot
Match: EXO_ARATH (Protein EXORDIUM OS=Arabidopsis thaliana OX=3702 GN=EXO PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.058e-24 Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 0 Query: 82 PLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAGEV 146 PL +PN DVG+DGM+IN+A L AGT TNPFG GY+ G AP+EAASACPG Y KGAYPGYAG++ Sbjct: 213 PLVAPNNDVGLDGMVINLASLLAGTATNPFGNGYYQGPQNAPLEAASACPGVYGKGAYPGYAGDL 277
BLAST of CMJ_chr3_018260.1 vs. ExPASy Swiss-Prot
Match: PHI1_ORYSJ (Protein PHOSPHATE-INDUCED 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=PHI-1 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.378e-23 Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 0 Query: 81 APLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAGEV 146 APL PNGDVGVDGM+I++A + GTVTNPFG G+F G +AP+EAA+AC G Y KGAYPGYAG + Sbjct: 209 APLTPPNGDVGVDGMVISLASMIVGTVTNPFGNGFFQGDADAPLEAATACAGVYGKGAYPGYAGSL 274
BLAST of CMJ_chr3_018260.1 vs. ExPASy Swiss-Prot
Match: EXOL2_ARATH (Protein EXORDIUM-like 2 OS=Arabidopsis thaliana OX=3702 GN=EXL2 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.055e-23 Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 0 Query: 80 TAPLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAGEV 146 T PL +PNGDVGVDGMIIN+A L A TVTNPF GY+ G AP+EA SACPG + G+YPGYAG V Sbjct: 202 TPPLVAPNGDVGVDGMIINLATLLANTVTNPFNNGYYQGPPTAPLEAVSACPGIFGSGSYPGYAGRV 268
BLAST of CMJ_chr3_018260.1 vs. ExPASy Swiss-Prot
Match: EXOL1_ARATH (Protein EXORDIUM-like 1 OS=Arabidopsis thaliana OX=3702 GN=EXL1 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 7.455e-22 Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 0 Query: 82 PLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAGEV 146 PL +PN DVG+DGM+IN+A L A T TNPFG GY+ G AP+EA SAC G Y KG+YPGYAGE+ Sbjct: 208 PLVAPNNDVGLDGMVINLASLMAATATNPFGDGYYQGPKTAPLEAGSACTGVYGKGSYPGYAGEL 272
BLAST of CMJ_chr3_018260.1 vs. ExPASy Swiss-Prot
Match: EXOL4_ARATH (Protein EXORDIUM-like 4 OS=Arabidopsis thaliana OX=3702 GN=EXL4 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.276e-13 Identity = 39/65 (60.00%), Postives = 42/65 (64.62%), Query Frame = 0 Query: 82 PLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAGEV 146 PL +PNGDVGVDGMIINIA L TVTNP +P EA SAC G + GAYPGYAG V Sbjct: 189 PLVAPNGDVGVDGMIINIATLLVNTVTNP-----------SP-EAVSACTGIFGSGAYPGYAGRV 241
BLAST of CMJ_chr3_018260.1 vs. Araport11
Match: AT4G08950.1 (| Phosphate-responsive 1 family protein | Chr4:5740378-5741322 FORWARD LENGTH=314 | 201606) HSP 1 Score: 99.3673 bits (246), Expect = 1.083e-25 Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 0 Query: 82 PLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAGEV 146 PL +PN DVG+DGM+IN+A L AGT TNPFG GY+ G AP+EAASACPG Y KGAYPGYAG++ Sbjct: 213 PLVAPNNDVGLDGMVINLASLLAGTATNPFGNGYYQGPQNAPLEAASACPGVYGKGAYPGYAGDL 277
BLAST of CMJ_chr3_018260.1 vs. Araport11
Match: AT5G64260.1 (| EXORDIUM like 2 | Chr5:25703980-25704897 FORWARD LENGTH=305 | 201606) HSP 1 Score: 94.3597 bits (233), Expect = 7.218e-24 Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 0 Query: 80 TAPLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAGEV 146 T PL +PNGDVGVDGMIIN+A L A TVTNPF GY+ G AP+EA SACPG + G+YPGYAG V Sbjct: 202 TPPLVAPNGDVGVDGMIINLATLLANTVTNPFNNGYYQGPPTAPLEAVSACPGIFGSGSYPGYAGRV 268
BLAST of CMJ_chr3_018260.1 vs. Araport11
Match: AT1G35140.1 (| Phosphate-responsive 1 family protein | Chr1:12852089-12853018 FORWARD LENGTH=309 | 201606) HSP 1 Score: 91.6633 bits (226), Expect = 7.627e-23 Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 0 Query: 82 PLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAGEV 146 PL +PN DVG+DGM+IN+A L A T TNPFG GY+ G AP+EA SAC G Y KG+YPGYAGE+ Sbjct: 208 PLVAPNNDVGLDGMVINLASLMAATATNPFGDGYYQGPKTAPLEAGSACTGVYGKGSYPGYAGEL 272
BLAST of CMJ_chr3_018260.1 vs. Araport11
Match: AT5G09440.1 (| EXORDIUM like 4 | Chr5:2938397-2939233 FORWARD LENGTH=278 | 201606) HSP 1 Score: 69.3218 bits (168), Expect = 1.306e-14 Identity = 39/65 (60.00%), Postives = 42/65 (64.62%), Query Frame = 0 Query: 82 PLGSPNGDVGVDGMIINIAGLFAGTVTNPFGKGYFVGSVEAPVEAASACPGEYDKGAYPGYAGEV 146 PL +PNGDVGVDGMIINIA L TVTNP +P EA SAC G + GAYPGYAG V Sbjct: 189 PLVAPNGDVGVDGMIINIATLLVNTVTNP-----------SP-EAVSACTGIFGSGAYPGYAGRV 241 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_018260.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_018260.1 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 6 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_018260.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 4 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_018260.1_cmj_v1 ID=CMJ_chr3_018260.1_cmj_v1; Name=CMJ_chr3_018260.1; organism=Citrus maxima; type=mRNA; length=441bpback to top protein sequence of CMJ_chr3_018260.1_cmj_v1 >CMJ_chr3_018260.1_cmj_v1 ID=CMJ_chr3_018260.1_cmj_v1; Name=CMJ_chr3_018260.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=147bpback to top mRNA from alignment at chr3:35834393..35836237+ Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1845bp; location=Sequence derived from: chr3:35834393..35836237+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:35834393..35836237+ >CMJ_chr3_018260.1_cmj_v1 ID=CMJ_chr3_018260.1_cmj_v1; Name=CMJ_chr3_018260.1; organism=Citrus maxima; type=CDS; length=441bp; location=Sequence derived from: chr3:35834393..35836237+ (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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