CMJ_chr3_018820.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr3_018820.1
Unique Name	CMJ_chr3_018820.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	321

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caucmjL026	Citrus australis genome v1.0 (UQ)	Citrus australis
caucmjL119	Citrus australis genome v1.0 (UQ)	Citrus australis
clecmjL025	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecmjL485	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecmjL625	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecmjL661	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmjfhsR184	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmjfhsR203	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmjcmjL009	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
cmjzkR211	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
cmjzkR238	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
cmcmjL044	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmcmjL206	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmjminR0334	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjminR0347	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjminR0387	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjminR0402	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjeglR0426	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR0510	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR0574	Citrus glauca CRC3463 genome v1	Citrus glauca
ccrcmjL223	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL308	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL565	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL664	Citrus australasica CRC3672 genome v1	Citrus australasica
abhcmjL039	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
abhcmjL143	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
cizcmjL127	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cizcmjL413	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cmjcmxR193	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmxR220	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmmR150	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
cmjcmmR153	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
caacmjL034	Citrus australasica cv. AZM genome v1.0	Citrus australasica
caacmjL352	Citrus australasica cv. AZM genome v1.0	Citrus australasica
cigcmjL219	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cigcmjL520	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cmhcmjL048	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmhcmjL143	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmjcsjR247	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR256	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR269	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR292	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjneiR157	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cmjcraR229	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR257	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR272	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR289	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cchcmjL026	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
cchcmjL108	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
ciucmjL025	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL071	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL164	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL540	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgacmjL027	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL072	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL166	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL549	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgucmjL025	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL076	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL174	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL537	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cmjcrcR152	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcrcR168	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcriR230	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR242	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR258	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR283	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Orthologs


Gene/Transcript	Assembly	Species
g4217.t1	Citrus australis genome v1.0 (UQ)	Citrus australis
NM_gene20546.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon
Cau_v1.primary_g15761.t1	Citrus australasica CRC3672 genome v1	Citrus australasica
Fh3g28950.1	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
eg_v1.0.alternate_g22112.t1	Citrus glauca CRC3463 genome v1	Citrus glauca
g8432.t1_h1	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
NM_gene16781.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon
g7713.t1	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
Egl131520.1	Citrus australasica cv. AZM genome v1.0	Citrus australasica
hap2-g7243.t1	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
g7671.t1_h2	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
huyou00011125-RA	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Cmt123350.1	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
Cg3g015230.1	Citrus maxima (C. grandis) genome v1.0	Citrus maxima

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr3_018820	CMJ_chr3_018820_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_018820.1.exon5	CMJ_chr3_018820.1.exon5_cmj_v1	Citrus maxima	exon
CMJ_chr3_018820.1.exon4	CMJ_chr3_018820.1.exon4_cmj_v1	Citrus maxima	exon
CMJ_chr3_018820.1.exon3	CMJ_chr3_018820.1.exon3_cmj_v1	Citrus maxima	exon
CMJ_chr3_018820.1.exon2	CMJ_chr3_018820.1.exon2_cmj_v1	Citrus maxima	exon
CMJ_chr3_018820.1.exon1	CMJ_chr3_018820.1.exon1_cmj_v1	Citrus maxima	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_018820.1.utr3.3	CMJ_chr3_018820.1.utr3.3_cmj_v1	Citrus maxima	three_prime_UTR
CMJ_chr3_018820.1.utr3.2	CMJ_chr3_018820.1.utr3.2_cmj_v1	Citrus maxima	three_prime_UTR
CMJ_chr3_018820.1.utr3.1	CMJ_chr3_018820.1.utr3.1_cmj_v1	Citrus maxima	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_018820.1.cds.3	CMJ_chr3_018820.1.cds.3_cmj_v1	Citrus maxima	CDS
CMJ_chr3_018820.1.cds.2	CMJ_chr3_018820.1.cds.2_cmj_v1	Citrus maxima	CDS
CMJ_chr3_018820.1.cds.1	CMJ_chr3_018820.1.cds.1_cmj_v1	Citrus maxima	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_018820.1_cmj_v1	CMJ_chr3_018820.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr3_018820.1_cmj_v1	CMJ_chr3_018820.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

The following BLAST results are available for this feature:

BLAST of CMJ_chr3_018820.1 vs.
BLAST of CMJ_chr3_018820.1 vs.
BLAST of CMJ_chr3_018820.1 vs.

BLAST of CMJ_chr3_018820.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_018820.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_018820.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:36199124..36202197-
coding sequence from alignment at chr3:36199124..36202197-

mRNA sequence

>CMJ_chr3_018820.1_cmj_v1 ID=CMJ_chr3_018820.1_cmj_v1; Name=CMJ_chr3_018820.1; organism=Citrus maxima; type=mRNA; length=321bp
ATGAAACTGCAAATTGAAGGGTTGAGTGCGCGTGGGTCACTTGATAAGGC
CGAGAATGAGAACCTGGAGAAATTATGTGACCCGTCAAAATTGTTTCATG
AAGACGAGACTGATCTTGATGACCCGAGCATTATTAAGCTTGAGGGGAGG
TCATTTCAAGACATCTGGAAGTACAAGATCAGAGTAGAATCGGAGGGCGG
TACAGTCCCACCAATTTGGTGCGTTGACACTAGAAGTAAGGGGTGGGGTT
TTTCCATGTTGAATGCTTCATATGCATCAATGGAGCGTGAAGTGAAGGAC
AATCGAGTCGATCTTCAATAA

protein sequence of CMJ_chr3_018820.1_cmj_v1

>CMJ_chr3_018820.1_cmj_v1 ID=CMJ_chr3_018820.1_cmj_v1; Name=CMJ_chr3_018820.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=107bp
MKLQIEGLSARGSLDKAENENLEKLCDPSKLFHEDETDLDDPSIIKLEGR
SFQDIWKYKIRVESEGGTVPPIWCVDTRSKGWGFSMLNASYASMEREVKD
NRVDLQ*

mRNA from alignment at chr3:36199124..36202197-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=3074bp; location=Sequence derived from: chr3:36199124..36202197- (Citrus maxima
ATGAAACTGCAAATTGAAGGGTCTTCAGGTTCTTTGCATTTTTGATTTCC
TGCTATTGTTTGGCCTTTTTTGCCCTACTGTTTCTGGGTTAATTGGCTGT
AATTTTTTATTTTCATTGGATACTTTTTTGGGTTCATTTTCTGTTTTTTT
CGGTTTCATTTTCTACTGTTTTTGGGTTTATTTCCTGCTGTTTTTTGACT
TTTTATTTTTGCGGTTTCTGGGTTAATTTACTGTATTTTTTGGTTTTGAT
AGCCAAATTTTGTAAATTCACTATCATACTTCACATTTAATAATGATTTT
ATTTATTCATTTTGACATTTGATTAGGATTCTTATATTGGATCATGCATA
GATTATTAGTTGTATAACCTTGTTTTGTTCTTGTTTTTGTCGGTATTAGG
ACATGAGGCTGCTTTTGAGACATGTGGGTAGACAGATAGTGCGTCATGTT
GAAGGTTTAATAATTTAATTTTTTGTATAATTTTTTAGTCTGAAAACTTT
TAATTTTATGAACTAACTTCCCCCATTAAGAGAGGCACTTGGCCTCCGTC
ATTTTAGCAGGTTGAGTGCGCGTGGGTCACTTGATAAGGCCGAGAATGAG
AACCTGGAGAAATTATGTGACCCGTCAAAATTGTTTCATGAAGACGAGAC
TGATCTTGATGACCCGAGCATTATTAAGTGAGTGAATCTAATTCGAACTG
GTTGGTGTACTATTCTGTTGCAAATGATATTTTTTAACTTTAATTTTTTT
TTTTTTTTTGTAGGTTGGTGTATGTCACTGAGAGCTTTAAGCATTTTGGT
TCAAGGCTTGAGGGGAGGTCATTTCAAGACATCTGGAAGTACAAGATCAG
AGTAGAATCGGAGGGCGGTACAGTCCCACCAATTTGGTGCGTTGACACTA
GAAGTAAGGGGTGGGGTTTTTCCATGTTGAATGCTTCATATGCATCAATG
GAGCGTGAAGTGAAGGACAATCGAGTCGATCTTCAATAATTTATCACTCC
GCTCACTGGAATGGATGCAACTGAGGATCCTGCTATCTTAAACTCGGAGT
TGGAGTATATCGCTAGAGAGACCGGGCAGTTGTTTACTCTAGAAGATGCA
CAATATGGTAAATTACTCGTTGAACCTTATGTCGTCCACGTGAAGGCTAG
TATGATGGCATTTGTTAAGAATATTTGACGTGTGACAGGTAATATTTCTT
GCTTTAAATTTTATGCGTGACAGCTCTCCATGATTATGCCTTGATTATTG
AATTTTTTAATCTAATTCATCAGTTTTTCGTTTATCTCCTTTATTTTCAC
TTCTAATTGTTCAATACATAATTGTTATTTTTAAATTGCAGGTTGGCGTG
AGCTTCCTGATCAGGAGAGATAGTGGGAGGAGGTTAGAGAGAAGAGCTGA
CATATGCGTATCTGTATAGAAAATTGAATAGTAGAGAAAGTGACAATTGT
GATAGGTAAATAATTTTGTGTTTTTTATGTGTTACGTACGGATCTCCACT
TGATGTATATGTACTTGAATGTTTACTTTATGTATATGTCAACACCTATT
CTTTAACTGCATGTAGTGTGAGATGAAGAGTGGTATGTGCCTATTTCATA
GATTTATTATGGTCACTTGGTTGTGTTGCTCACATTGATGTTAGTAACGT
CATCCATTAGATTATTGTTTTCACATCCGTATATACTTAGAACTATATGT
AATATATAGTGGTATATCTCAATAATTTGTATGTTTATATGTCTACTTAT
GAGTGCATATATGTGCACTTTGAAATGAGTAGAATTTGGTAGTTGCAATA
CATTACAACGCCTTAAAAGTGAACATCTAAGTATATGCATACTTAGGTAT
TTAGTTTAAACATGCCTTAAACTTAGAAGTGGTAAACTTCTAAGTTCACA
AAAATACATGTGTACTTAGACTTTTACTGCATATAGCGTCGGATTGACTG
AGTGGTTGTGATATATTTGATAGATTCACCACTATCATTTGACAGTCTCT
CTCACCTTGACGTTAGTAACATCATCCATTAGATTAGTACTTTTACATCT
AACATCAATTATATTATTAATTTTACAATTATATGTACTTATATATGTAT
ATATTTTATGTAATGTATTGTTATATATCTCTATAATTTGTGTGTTTATA
TGTCTGCTTATGAGTTCATATATGTGCACTTTGAAATTGGTAGAATTTGG
TAGTTGCAGTACATTACAACGTCTTGAAAGTGAACATCTAAGTATATGAT
TATTTAGATGTTTAGTTTAAACATGTCTTAAATATGTCCAGCCTACAACA
CACAACCTCCTCCCTTAAATTTGACCAAGTAAAAGAGGCATTAATTAACT
TTGGATCTGTCAATTCAGCTTCTCTAATGAATTCATTGAACATCTTTATA
CTATTAGTCTCTCTACCCCCATTTGATTTCTCAGAGGGGAATCTAATTAC
ATTAAAATCTCCACCGACACACCAATTAGGACTACAAACACCATAAAGGC
CAGCCAATTCCTCCCAAAAAGCCATTCATTTAGTTTCTAAATTGATTTGG
CCATTTGATCAGCAAGAATTTAATGAAACTGCAAATTGAAGGGTCTTCAG
GTTCTTTGCATTTTTGATTTCCTGCTATTGTTTGGCCTTTTTTGCCCTAT
TGTTTCTGGGTTAATTGGCTGTAATTTTTTGTTTTCATTGGCTGTTGTTT
TGGGTTCATTTTCTGTTGTCTCTGGTTTCATTTTCTGTTGTTTTTGGGTT
TTATTTCCTGCTGTTTTTTGACTTTTTATTTTTGCGGTTTCTGGGTTAAT
TTACTGTATTTTTTGGTTTTGATAGCCAAATTTTGTAAATTCACTATCAT
ACTTGACATTTAATAGTGATTTTATTTATTCATTTTGACATTTGATTAGG
ATTCTTATATTCGATCATGCATATATTATTAGTTGTATAACCTTGTTTTG
TTCTTGTTTTTGTCGGTATTAGGACATGAGGCTGCTTTTGAGACATGTGG
GTAGACAGATAGTGCGTCATGTTGCAGGTTTAATAATTTATTTTTTTGTA
TAATTTTTTAGTCTGAAAACTTTT

Coding sequence (CDS) from alignment at chr3:36199124..36202197-

>CMJ_chr3_018820.1_cmj_v1 ID=CMJ_chr3_018820.1_cmj_v1; Name=CMJ_chr3_018820.1; organism=Citrus maxima; type=CDS; length=321bp; location=Sequence derived from: chr3:36199124..36202197- (Citrus maxima
ATGAAACTGCAAATTGAAGGGTTGAGTGCGCGTGGGTCACTTGATAAGGC
CGAGAATGAGAACCTGGAGAAATTATGTGACCCGTCAAAATTGTTTCATG
AAGACGAGACTGATCTTGATGACCCGAGCATTATTAAGCTTGAGGGGAGG
TCATTTCAAGACATCTGGAAGTACAAGATCAGAGTAGAATCGGAGGGCGG
TACAGTCCCACCAATTTGGTGCGTTGACACTAGAAGTAAGGGGTGGGGTT
TTTCCATGTTGAATGCTTCATATGCATCAATGGAGCGTGAAGTGAAGGAC
AATCGAGTCGATCTTCAATAA