CMJ_chr3_018960.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_018960.1 vs. ExPASy TrEMBL
Match: A0A2H5N8I2|A0A2H5N8I2_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_022770 PE=4 SV=1) HSP 1 Score: 335.495 bits (859), Expect = 1.684e-115 Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 Query: 1 MYRCELCNFNLHTDCMFTTTHKHHDYFKDSTFQFFTQLPEYNGSRDGYKYCEACLKTTPGFVYHCEKNGCNLHPCCFNLPIKLQILDAELELSDKELSGKCLWCNKKRLKGSVTGNSGWSYVSACKTYNCHAYCSTNMLLEKWEKADSGNDCLVPKNV 158 MYRCELCNFNLHTDCMFTTTHKHHDYFKDSTFQFFTQLPEYNGSRDGYKYCEACLKTTPGFVYHCEKNGCNLHPCCFNLPIKLQILDAELELSDKELSGKCLWCNKKRLKGSVTGNSGWSYVSACKTYNCHAYCSTNMLLEKWEKADSGNDCLVPKNV Sbjct: 1 MYRCELCNFNLHTDCMFTTTHKHHDYFKDSTFQFFTQLPEYNGSRDGYKYCEACLKTTPGFVYHCEKNGCNLHPCCFNLPIKLQILDAELELSDKELSGKCLWCNKKRLKGSVTGNSGWSYVSACKTYNCHAYCSTNMLLEKWEKADSGNDCLVPKNV 158
BLAST of CMJ_chr3_018960.1 vs. ExPASy TrEMBL
Match: A0A2H5NYL6|A0A2H5NYL6_CITUN (C1_2 domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_087820 PE=4 SV=1) HSP 1 Score: 333.183 bits (853), Expect = 3.035e-113 Identity = 154/162 (95.06%), Postives = 161/162 (99.38%), Query Frame = 0 Query: 1 MYRCELCNFNLHTDCMFTTTHKHHDYFKDSTFQFFTQLPEYNGSRDGYKYCEACLKTTPGFVYHCEKNGCNLHPCCFNLPIKLQILDAELELSDKELSGKCLWCNKKRLKGSVTGNSGWSYVSACKTYNCHAYCSTNMLLEKWEKADSGNDCLVPKNVQQPI 162 MYRCELCNFNLHTDCMFTT+HKHHD+FKDSTFQFFTQLP+Y+GSRDGYKYCEAC+K TPGFVYHCEKNGC+LHPCCFNLPIKLQILDAELELSDKELSGKCLWCNKKRLKGSVTGNSGWSYVSACKTYNCHAYCST+MLLEKWEKADSGNDCLVPKNVQQPI Sbjct: 79 MYRCELCNFNLHTDCMFTTSHKHHDHFKDSTFQFFTQLPKYSGSRDGYKYCEACVKPTPGFVYHCEKNGCDLHPCCFNLPIKLQILDAELELSDKELSGKCLWCNKKRLKGSVTGNSGWSYVSACKTYNCHAYCSTHMLLEKWEKADSGNDCLVPKNVQQPI 240
BLAST of CMJ_chr3_018960.1 vs. ExPASy TrEMBL
Match: A0A2H5NA72|A0A2H5NA72_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_022750 PE=4 SV=1) HSP 1 Score: 296.59 bits (758), Expect = 1.930e-99 Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0 Query: 20 THKHHDYFKDSTFQFFTQLPEYNGSRDGYKYCEACLKTTPGFVYHCEKNGCNLHPCCFNLPIKLQILDAELELSDKELSGKCLWCNKKRLKGSVTGNSGWSYVSACKTYNCHAYCSTNMLLEKWEKADSGNDCLVPKNV 158 T KHHDYFKDSTFQFFTQLPEYNGSRDGYKYCEACLKTTPGFVYHCEKNGCNLHPCCFNLPIKLQILDAELELSDKELSGKCLWCNKKRLKGSVTGNSGWSYVSACKTYNCHAYCSTNMLLEKWEKADSGNDCLVPKNV Sbjct: 58 TMKHHDYFKDSTFQFFTQLPEYNGSRDGYKYCEACLKTTPGFVYHCEKNGCNLHPCCFNLPIKLQILDAELELSDKELSGKCLWCNKKRLKGSVTGNSGWSYVSACKTYNCHAYCSTNMLLEKWEKADSGNDCLVPKNV 196
BLAST of CMJ_chr3_018960.1 vs. ExPASy TrEMBL
Match: A0A2H5NYX7|A0A2H5NYX7_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_087830 PE=4 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 1.252e-85 Identity = 121/131 (92.37%), Postives = 127/131 (96.95%), Query Frame = 0 Query: 18 TTTHKHHDYFKDSTFQFFTQLPEYNGSRDGYKYCEACLKTTPGFVYHCEKNGCNLHPCCFNLPIKLQILDAELELSDKELSGKCLWCNKKRLKGSVTGNSGWSYVSACKTYNCHAYCSTNMLLEKWEKADS 148 TT HHD+FKDSTFQFFTQLP+Y+GSRDGYKYCEAC+K TPGFVYHCEKNGC+LHPCCFNLPIKLQILDAELELSDKELSGKCLWCNKKRLKGSVTGNSGWSYVSACKTYNCHAYCST+MLLEKWEKADS Sbjct: 39 TTPSYHHDHFKDSTFQFFTQLPKYSGSRDGYKYCEACVKPTPGFVYHCEKNGCDLHPCCFNLPIKLQILDAELELSDKELSGKCLWCNKKRLKGSVTGNSGWSYVSACKTYNCHAYCSTHMLLEKWEKADS 169
BLAST of CMJ_chr3_018960.1 vs. ExPASy TrEMBL
Match: A0A2H5NYM6|A0A2H5NYM6_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_087860 PE=4 SV=1) HSP 1 Score: 253.832 bits (647), Expect = 7.591e-83 Identity = 120/142 (84.51%), Postives = 125/142 (88.03%), Query Frame = 0 Query: 21 HKHHDYFKDSTFQFFTQLPEYNGSRDGYKYCEACLKTTPGFVYHCEKNGCNLHPCCFNLPIKLQILDAELELSDKELSGKCLWCNKKRLKGSVTGNSGWSYVSACKTYNCHAYCSTNMLLEKWEKADSGNDCLVPKNVQQPI 162 HKHHD+FKDSTFQFFTQLP Y+GS GY YCEAC+K TPGFVYHCEKNGCNLHPCCFNLP KLQILDAE ELSDK+LS KCL CNKKRL GS G GWSYV+AC YN HAYCSTNMLLEKWEKADSGNDCLVPKNVQQPI Sbjct: 30 HKHHDHFKDSTFQFFTQLPGYSGSPGGYNYCEACVKPTPGFVYHCEKNGCNLHPCCFNLPTKLQILDAEFELSDKKLSEKCLQCNKKRLNGSTAGIPGWSYVAACNKYNYHAYCSTNMLLEKWEKADSGNDCLVPKNVQQPI 171
BLAST of CMJ_chr3_018960.1 vs. ExPASy TrEMBL
Match: V4T7R7|V4T7R7_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033757mg PE=4 SV=1) HSP 1 Score: 250.751 bits (639), Expect = 7.562e-82 Identity = 118/140 (84.29%), Postives = 123/140 (87.86%), Query Frame = 0 Query: 23 HHDYFKDSTFQFFTQLPEYNGSRDGYKYCEACLKTTPGFVYHCEKNGCNLHPCCFNLPIKLQILDAELELSDKELSGKCLWCNKKRLKGSVTGNSGWSYVSACKTYNCHAYCSTNMLLEKWEKADSGNDCLVPKNVQQPI 162 HHD+FKDSTFQFFTQLP Y+GS GY YCEAC+K TPGFVYHCEKNGCNLHPCCFNLP KLQILDAE ELSDK+LS KCL CNKKRL GS G GWSYV+AC YN HAYCSTNMLLEKWEKADSGNDCLVPKNVQQPI Sbjct: 20 HHDHFKDSTFQFFTQLPGYSGSPGGYNYCEACVKPTPGFVYHCEKNGCNLHPCCFNLPTKLQILDAEFELSDKKLSEKCLQCNKKRLNGSTAGIPGWSYVAACNKYNYHAYCSTNMLLEKWEKADSGNDCLVPKNVQQPI 159
BLAST of CMJ_chr3_018960.1 vs. ExPASy TrEMBL
Match: A0A2H5NYL0|A0A2H5NYL0_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_087870 PE=4 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 1.132e-71 Identity = 112/150 (74.67%), Postives = 119/150 (79.33%), Query Frame = 0 Query: 21 HKHHDYFKDSTFQFFTQLPEYNGSRDGYKYCEACLKTTPGFVYHCEKNGCNLHPCCFNLPIKLQILDAELELSDKELSGKCLWCNKKRLKGSVTGNSGWSYVSACKTYNCHAYCSTNMLLEKWEKADSGNDCLVPKNVQQPIKKQLKTKK 170 HKHHD+FKDSTFQFFTQLP Y+GS GY YCEAC+K TPGFVYHCEKNGCNLHPCCFNLP KLQILDAE ELSDK+LS KCL CNKKRL GS G GWSYV+AC YN HAYCSTNMLLEKWEKADS V K Q +K +K K Sbjct: 100 HKHHDHFKDSTFQFFTQLPGYSGSPGGYNYCEACVKPTPGFVYHCEKNGCNLHPCCFNLPTKLQILDAEFELSDKKLSEKCLQCNKKRLNGSTAGIPGWSYVAACNKYNYHAYCSTNMLLEKWEKADS----EVKKKNQHGVKPCIKNVK 245
BLAST of CMJ_chr3_018960.1 vs. ExPASy TrEMBL
Match: A0A2H5NYM2|A0A2H5NYM2_CITUN (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_087860 PE=4 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 1.907e-67 Identity = 102/122 (83.61%), Postives = 106/122 (86.89%), Query Frame = 0 Query: 41 YNGSRDGYKYCEACLKTTPGFVYHCEKNGCNLHPCCFNLPIKLQILDAELELSDKELSGKCLWCNKKRLKGSVTGNSGWSYVSACKTYNCHAYCSTNMLLEKWEKADSGNDCLVPKNVQQPI 162 Y+GS GY YCEAC+K TPGFVYHCEKNGCNLHPCCFNLP KLQILDAE ELSDK+LS KCL CNKKRL GS G GWSYV+AC YN HAYCSTNMLLEKWEKADSGNDCLVPKNVQQPI Sbjct: 44 YSGSPGGYNYCEACVKPTPGFVYHCEKNGCNLHPCCFNLPTKLQILDAEFELSDKKLSEKCLQCNKKRLNGSTAGIPGWSYVAACNKYNYHAYCSTNMLLEKWEKADSGNDCLVPKNVQQPI 165
BLAST of CMJ_chr3_018960.1 vs. ExPASy TrEMBL
Match: A0A2H5NZF8|A0A2H5NZF8_CITUN (C1_2 domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_087850 PE=3 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 2.748e-65 Identity = 115/220 (52.27%), Postives = 143/220 (65.00%), Query Frame = 0 Query: 1 MYRCELCNFNLHTDCMFTTTH--KHHDYFKDSTFQFFTQLPEYNGSRDGY---KYCEACLKTTPGFVYHCEKNGCNLHPCCFNLPIKLQILDAELELSDKELSGKCLWCNKKRLKGSVTGNSGWSYVSACKTYNCHAYCSTNMLLEKWEKA-----DSGNDCLVPKNVQQPIKKQLKTKKGTKGNMKLQMAKKLFETLVSIFIGDHIIITLVSLIVTALV 210 MYRCELCNFNLH CMF H++F +STF+ +LP +RD K+C AC + GFVYHCE+ G NLHPCCFNLP KL I E LSDKELS +C+WC KRL+GS + N GWSYVS C Y+CHA+CST MLLE W+ + DS LVP +++ P+K QLK KG +GN L +AK F+ LVSIFIGD TL++ ++ LV Sbjct: 394 MYRCELCNFNLHIPCMFIDRKPAAKHEFFGNSTFKSLPKLPGICSTRDCRDCNKHCHACARPADGFVYHCEEKGRNLHPCCFNLPRKLAIGSVEFVLSDKELSQECIWCESKRLQGSASDNWGWSYVSKCNNYHCHAFCSTEMLLENWKSSEEKSKDSTYYSLVPNSLKLPVKSQLKRNKG-RGNKYLMIAKGFFQILVSIFIGDP--TTLLASLILGLV 610
BLAST of CMJ_chr3_018960.1 vs. ExPASy TrEMBL
Match: A0A067FJU2|A0A067FJU2_CITSI (C1_2 domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g005824mg PE=3 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 7.037e-65 Identity = 115/220 (52.27%), Postives = 143/220 (65.00%), Query Frame = 0 Query: 1 MYRCELCNFNLHTDCMFTTTH--KHHDYFKDSTFQFFTQLPEYNGSRDGY---KYCEACLKTTPGFVYHCEKNGCNLHPCCFNLPIKLQILDAELELSDKELSGKCLWCNKKRLKGSVTGNSGWSYVSACKTYNCHAYCSTNMLLEKWEKA-----DSGNDCLVPKNVQQPIKKQLKTKKGTKGNMKLQMAKKLFETLVSIFIGDHIIITLVSLIVTALV 210 MYRCELCNFNLH CMF H++F +STF+ +LP +RD K+C AC + GFVYHCE+ G NLHPCCFNLP KL I E LSDKELS +C+WC KRL+GS + N GWSYVS C Y+CHA+CST MLLE W+ + DS LVP +++ P+K QLK KG +GN L +AK F+ LVSIFIGD TL++ ++ LV Sbjct: 457 MYRCELCNFNLHIPCMFIDRKPAAKHEFFGNSTFKSLPKLPGICSTRDCRDCNKHCHACARPADGFVYHCEEKGRNLHPCCFNLPRKLAIGSVEFVLSDKELSQECIWCESKRLQGSASDNWGWSYVSKCNNYHCHAFCSTEMLLENWKSSEEKSKDSTYYSLVPNSLKLPVKSQLKRNKG-RGNKYLMIAKGFFQILVSIFIGDP--TTLLASLILGLV 673
BLAST of CMJ_chr3_018960.1 vs. Araport11
Match: AT2G16050.1 (| Cysteine/Histidine-rich C1 domain family protein | Chr2:6980450-6981939 FORWARD LENGTH=243 | 201606) HSP 1 Score: 103.219 bits (256), Expect = 9.093e-27 Identity = 69/218 (31.65%), Postives = 103/218 (47.25%), Query Frame = 0 Query: 2 YRCE-----LCNFNLHTDCMFTTTHKHHDYFKDSTFQFFTQLPEYNGSRDGYKYCEACLKTTPGFVYHCEKNGCNLHPCCFNLPIKLQILDAELELSDKELSGKCLWCNKKRLKGSVTGNSGWSYVSACKTYNCHAYCSTNMLLEKWEKADSGNDCLVPKNVQQPIKKQLKTKKGTKGNMKLQ----MAKKLFETLVSIFIGDHIIITLVSLIVTALV 210 YRC C+F+LH C + H ++K TFQF + P + +YC AC K GF+YHC+ G +LHPCC LP+ L + L L K +S C C KK WSY S+CK YN H C ML+E W + +G ++ +K L+ + K+Q +A + ++S +GD TL++ +V +L+ Sbjct: 39 YRCSGDNHGSCDFDLHAHCALPSASITHPFYKKCTFQFVARPPG-----NERRYCNACEKDVSGFLYHCKACGFDLHPCCAMLPMVLDDGETNLFLYRK-VSSSCHRCGKK--------GRSWSYRSSCKKYNLHVACVREMLVENWRELYTGQHGKSIEHKSLVLKNTLEHHHRSSRKGKVQKCCEIAGIAVQFVISAVLGD--PTTLIAGVVGSLI 240 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_018960.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_018960.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_018960.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_018960.1_cmj_v1 ID=CMJ_chr3_018960.1_cmj_v1; Name=CMJ_chr3_018960.1; organism=Citrus maxima; type=mRNA; length=636bpback to top protein sequence of CMJ_chr3_018960.1_cmj_v1 >CMJ_chr3_018960.1_cmj_v1 ID=CMJ_chr3_018960.1_cmj_v1; Name=CMJ_chr3_018960.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=212bpback to top mRNA from alignment at chr3:36269645..36270280- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=636bp; location=Sequence derived from: chr3:36269645..36270280- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:36269645..36270280- >CMJ_chr3_018960.1_cmj_v1 ID=CMJ_chr3_018960.1_cmj_v1; Name=CMJ_chr3_018960.1; organism=Citrus maxima; type=CDS; length=636bp; location=Sequence derived from: chr3:36269645..36270280- (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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