CMJ_chr3_019970.6
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_019970.6 vs. ExPASy TrEMBL
Match: A0A067GLY1|A0A067GLY1_CITSI (Glutaredoxin-like protein OS=Citrus sinensis OX=2711 GN=CISIN_1g030511mg PE=3 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 5.098e-76 Identity = 116/121 (95.87%), Postives = 119/121 (98.35%), Query Frame = 0 Query: 1 MAIMAAATVATVVSRPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVIL 121 MAIMAAATVATVV+RPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSS TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEV++ Sbjct: 1 MAIMAAATVATVVARPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSS--TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVLM 119
BLAST of CMJ_chr3_019970.6 vs. ExPASy TrEMBL
Match: A0A067GZ52|A0A067GZ52_CITSI (Glutaredoxin-like protein OS=Citrus sinensis OX=2711 GN=CISIN_1g030511mg PE=3 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 6.470e-76 Identity = 116/121 (95.87%), Postives = 119/121 (98.35%), Query Frame = 0 Query: 1 MAIMAAATVATVVSRPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVIL 121 MAIMAAATVATVV+RPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSS TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEV++ Sbjct: 1 MAIMAAATVATVVARPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSS--TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVLM 119
BLAST of CMJ_chr3_019970.6 vs. ExPASy TrEMBL
Match: V4TCM8|V4TCM8_CITCL (Glutaredoxin-like protein OS=Citrus clementina OX=85681 GN=CICLE_v10002717mg PE=3 SV=1) HSP 1 Score: 231.106 bits (588), Expect = 1.428e-75 Identity = 119/133 (89.47%), Postives = 120/133 (90.23%), Query Frame = 0 Query: 1 MAIMAAATVATVVSRPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVILFYFSLIFCWAIC 133 MAIMAAATVATVV+RPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSS TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEV LI C Sbjct: 25 MAIMAAATVATVVARPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSS--TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVTNERNVLITGGLFC 155
BLAST of CMJ_chr3_019970.6 vs. ExPASy TrEMBL
Match: V4V5W6|V4V5W6_CITCL (Glutaredoxin-like protein OS=Citrus clementina OX=85681 GN=CICLE_v10002717mg PE=3 SV=1) HSP 1 Score: 231.106 bits (588), Expect = 2.014e-75 Identity = 117/125 (93.60%), Postives = 118/125 (94.40%), Query Frame = 0 Query: 1 MAIMAAATVATVVSRPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVILFYFS 125 MAIMAAATVATVV+RPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSS TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTE L S Sbjct: 25 MAIMAAATVATVVARPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSS--TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEEALPRLS 147
BLAST of CMJ_chr3_019970.6 vs. ExPASy TrEMBL
Match: A0A067GZI3|A0A067GZI3_CITSI (Glutaredoxin-like protein OS=Citrus sinensis OX=2711 GN=CISIN_1g030511mg PE=3 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 2.225e-75 Identity = 117/125 (93.60%), Postives = 118/125 (94.40%), Query Frame = 0 Query: 1 MAIMAAATVATVVSRPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVILFYFS 125 MAIMAAATVATVV+RPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSS TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTE L S Sbjct: 1 MAIMAAATVATVVARPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSS--TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEEALPRLS 123
BLAST of CMJ_chr3_019970.6 vs. ExPASy TrEMBL
Match: A0A2H5NPA1|A0A2H5NPA1_CITUN (Glutaredoxin-like protein OS=Citrus unshiu OX=55188 GN=CUMW_061960 PE=3 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 4.444e-74 Identity = 116/125 (92.80%), Postives = 117/125 (93.60%), Query Frame = 0 Query: 1 MAIMAAATVATVVSRPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVILFYFS 125 MAIMAAATVATVV+RPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSS TRKLVLYSK GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTE L S Sbjct: 1 MAIMAAATVATVVARPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSS--TRKLVLYSKSGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEEALPRLS 123
BLAST of CMJ_chr3_019970.6 vs. ExPASy TrEMBL
Match: A0A2H5NNM6|A0A2H5NNM6_CITUN (Glutaredoxin-like protein OS=Citrus unshiu OX=55188 GN=CUMW_061950 PE=3 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 2.776e-61 Identity = 115/125 (92.00%), Postives = 120/125 (96.00%), Query Frame = 0 Query: 1 MAIMAAATVATVVSRPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVILFYFS 125 MAIMAAATVATVV+RPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSS TRKLVLYSK GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEV++ + + Sbjct: 1 MAIMAAATVATVVARPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSS--TRKLVLYSKSGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVLMAWIN 123
BLAST of CMJ_chr3_019970.6 vs. ExPASy TrEMBL
Match: A0A2I4ES01|A0A2I4ES01_JUGRE (Glutaredoxin-like protein OS=Juglans regia OX=51240 GN=LOC108992164 PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 5.432e-51 Identity = 90/124 (72.58%), Postives = 103/124 (83.06%), Query Frame = 0 Query: 4 MAAATVATVVSRPLSLTLVSRRRS--RWGFSPLAYSSSSSSSSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVILFYFS 125 M A V+RP S+ L++R+RS RW F+PLA SS SSS+SSS+ +RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQ+ DIT+NPEWE +YQYEIPVLA+VLSDGTE IL S Sbjct: 1 MNMAIAFAAVARPSSMVLLTRQRSIPRWVFTPLASSSFSSSTSSSTPSRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQIMDITSNPEWEMAYQYEIPVLAKVLSDGTEEILPRLS 124
BLAST of CMJ_chr3_019970.6 vs. ExPASy TrEMBL
Match: A0A5J5B759|A0A5J5B759_9ASTE (Glutaredoxin-like protein OS=Nyssa sinensis OX=561372 GN=F0562_028131 PE=3 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 6.302e-51 Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 0 Query: 4 MAAATVATVVSRPLSLTL-VSRRRSRWGFSPLA---YSSSSSSSSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTE 118 MA A +RP S L ++R+R++W FSP+A YS SSS+S RKL+LYSKPGCCLCDGLKEKLQAAF LSGPDSLHDVDLQ+RDITTNPEWE++YQYEIPVLAR+LSDGTE Sbjct: 1 MAIAVGVAFAARPSSSMLALTRQRAKWIFSPVASSSYSVQPGSSSTSFPPRKLILYSKPGCCLCDGLKEKLQAAFTLSGPDSLHDVDLQIRDITTNPEWERAYQYEIPVLARILSDGTE 119
BLAST of CMJ_chr3_019970.6 vs. ExPASy TrEMBL
Match: A0A5C7H8V5|A0A5C7H8V5_9ROSI (Glutaredoxin-like protein OS=Acer yangbiense OX=1000413 GN=EZV62_022131 PE=3 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 6.298e-50 Identity = 88/122 (72.13%), Postives = 101/122 (82.79%), Query Frame = 0 Query: 6 AATVATVVSRPLSLTLVSRRRS--RWGFSPLAYSSSSSSSSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVILFYFS 125 AAT+A +V+RP S+ L+ ++ RW PLA+SS SSSS+S S RKLVLYSKPGCCLCDGLKEKLQAAFLLSG +SLHDVDLQVRDITTNP+WE +YQYEIPVLAR+LSDGTE IL S Sbjct: 4 AATMAAIVARPPSIALLGKQTQGHRWVLGPLAFSSISSSSNSPSKPRKLVLYSKPGCCLCDGLKEKLQAAFLLSGSESLHDVDLQVRDITTNPDWENAYQYEIPVLARLLSDGTEEILPRLS 125
BLAST of CMJ_chr3_019970.6 vs. Araport11
Match: AT4G08280.3 (| Thioredoxin superfamily protein | Chr4:5230321-5231196 FORWARD LENGTH=134 | 201606) HSP 1 Score: 134.035 bits (336), Expect = 3.829e-41 Identity = 80/119 (67.23%), Postives = 89/119 (74.79%), Query Frame = 0 Query: 4 MAAATVATVVSRPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLS-GPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVIL 121 MAAA AT+V +RRR PL + S SSSSSS +TRKLVLYSKPGCCLCDGLKEKL AAF LS GPDSL+DV LQVRDITTNPEWE++YQYEIPVLA+ SDG E +L Sbjct: 9 MAAAISATLV-------FAARRR------PL-FCSLSSSSSSKPNTRKLVLYSKPGCCLCDGLKEKLHAAFTLSTGPDSLNDVTLQVRDITTNPEWERAYQYEIPVLAKENSDGKEEVL 113
BLAST of CMJ_chr3_019970.6 vs. Araport11
Match: AT4G08280.2 (| Thioredoxin superfamily protein | Chr4:5230321-5231196 FORWARD LENGTH=134 | 201606) HSP 1 Score: 134.035 bits (336), Expect = 3.829e-41 Identity = 80/119 (67.23%), Postives = 89/119 (74.79%), Query Frame = 0 Query: 4 MAAATVATVVSRPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLS-GPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVIL 121 MAAA AT+V +RRR PL + S SSSSSS +TRKLVLYSKPGCCLCDGLKEKL AAF LS GPDSL+DV LQVRDITTNPEWE++YQYEIPVLA+ SDG E +L Sbjct: 9 MAAAISATLV-------FAARRR------PL-FCSLSSSSSSKPNTRKLVLYSKPGCCLCDGLKEKLHAAFTLSTGPDSLNDVTLQVRDITTNPEWERAYQYEIPVLAKENSDGKEEVL 113
BLAST of CMJ_chr3_019970.6 vs. Araport11
Match: AT4G08280.1 (| Thioredoxin superfamily protein | Chr4:5230345-5231196 FORWARD LENGTH=126 | 201606) HSP 1 Score: 133.65 bits (335), Expect = 4.267e-41 Identity = 80/119 (67.23%), Postives = 89/119 (74.79%), Query Frame = 0 Query: 4 MAAATVATVVSRPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLS-GPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEVIL 121 MAAA AT+V +RRR PL + S SSSSSS +TRKLVLYSKPGCCLCDGLKEKL AAF LS GPDSL+DV LQVRDITTNPEWE++YQYEIPVLA+ SDG E +L Sbjct: 1 MAAAISATLV-------FAARRR------PL-FCSLSSSSSSKPNTRKLVLYSKPGCCLCDGLKEKLHAAFTLSTGPDSLNDVTLQVRDITTNPEWERAYQYEIPVLAKENSDGKEEVL 105 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_019970.6 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_019970.6 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_019970.6 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 3 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_019970.6_cmj_v1 ID=CMJ_chr3_019970.6_cmj_v1; Name=CMJ_chr3_019970.6; organism=Citrus maxima; type=mRNA; length=411bpback to top protein sequence of CMJ_chr3_019970.6_cmj_v1 >CMJ_chr3_019970.6_cmj_v1 ID=CMJ_chr3_019970.6_cmj_v1; Name=CMJ_chr3_019970.6_cmj_v1; organism=Citrus maxima; type=polypeptide; length=137bpback to top mRNA from alignment at chr3:36865367..36867875+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2509bp; location=Sequence derived from: chr3:36865367..36867875+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:36865367..36867875+ >CMJ_chr3_019970.6_cmj_v1 ID=CMJ_chr3_019970.6_cmj_v1; Name=CMJ_chr3_019970.6; organism=Citrus maxima; type=CDS; length=411bp; location=Sequence derived from: chr3:36865367..36867875+ (Citrus maximaback to top |