CMJ_chr3_020570.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr3_020570.1
Unique Name	CMJ_chr3_020570.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	423

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cmjdvaR115	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
clecmjL625	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmjdvbR109	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
clecmjL661	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmjminR0308	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjminR0363	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjeglR0426	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR0510	Citrus glauca CRC3463 genome v1	Citrus glauca
abhcmjL143	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
cmjcmxR231	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cigcmjL520	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cmhcmjL143	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
clxcmjL488	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
cmjcsjR269	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR292	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjneiR157	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cchcmjL108	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
cmjcrcR168	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcstR159	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
cmjcrmR246	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR260	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcriR258	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR283	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Orthologs


Gene/Transcript	Assembly	Species
gene-KPL71_016291-mRNA1	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
CsN03G008280.1	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
g7647.t1_h1	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
Csi03G009510.1	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
mi_v1.0.alternate_g16407.t1	Citrus inodora CRC3784 genome v1.0	Citrus inodora
CP3g000928.t1	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
drCitSine.Jinhong.1.0.HB3g09860.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
eg_v1.0.primary_g19107.t1	Citrus glauca CRC3463 genome v1	Citrus glauca
huyou00011280-RA	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
mi_v1.0.primary_g16592.t1	Citrus inodora CRC3784 genome v1.0	Citrus inodora
eg_v1.0.alternate_g22265.t1	Citrus glauca CRC3463 genome v1	Citrus glauca
gene-KPL70_016059-mRNA1	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
drCitSine.Jinhong.1.0.HA3g09880.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
g8281.t1_h1	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
g7522.t1_h2	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
evm.model.ctg157.468	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
Abu3g_018490.1	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
Citropsis281630.1	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
g8000.t1_h2	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
XGF170030.1	Citrus maxima cv. XGF genome v1.0	Citrus maxima
Cmt125320.1	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr3_020570	CMJ_chr3_020570_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_020570.1.exon4	CMJ_chr3_020570.1.exon4_cmj_v1	Citrus maxima	exon
CMJ_chr3_020570.1.exon3	CMJ_chr3_020570.1.exon3_cmj_v1	Citrus maxima	exon
CMJ_chr3_020570.1.exon2	CMJ_chr3_020570.1.exon2_cmj_v1	Citrus maxima	exon
CMJ_chr3_020570.1.exon1	CMJ_chr3_020570.1.exon1_cmj_v1	Citrus maxima	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_020570.1.cds.4	CMJ_chr3_020570.1.cds.4_cmj_v1	Citrus maxima	CDS
CMJ_chr3_020570.1.cds.3	CMJ_chr3_020570.1.cds.3_cmj_v1	Citrus maxima	CDS
CMJ_chr3_020570.1.cds.2	CMJ_chr3_020570.1.cds.2_cmj_v1	Citrus maxima	CDS
CMJ_chr3_020570.1.cds.1	CMJ_chr3_020570.1.cds.1_cmj_v1	Citrus maxima	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_020570.1_cmj_v1	CMJ_chr3_020570.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr3_020570.1_cmj_v1	CMJ_chr3_020570.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

The following BLAST results are available for this feature:

BLAST of CMJ_chr3_020570.1 vs.
BLAST of CMJ_chr3_020570.1 vs.
BLAST of CMJ_chr3_020570.1 vs.

BLAST of CMJ_chr3_020570.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_020570.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_020570.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:37265275..37266438-
coding sequence from alignment at chr3:37265275..37266438-

mRNA sequence

>CMJ_chr3_020570.1_cmj_v1 ID=CMJ_chr3_020570.1_cmj_v1; Name=CMJ_chr3_020570.1; organism=Citrus maxima; type=mRNA; length=423bp
ATGAAATTTTACTTGGATGATATTCCTGGTGACAGTTTAGCCAACTCCAA
CTTCCAGACTCATCTTGTTGTTACTGGCTTACTGCCTGACACTAGCTTGT
TGACATGCACCGGCCATTTTTGTTCAGTGCTTCTCGCCACTATTCAGGGC
AGGAAAATAATTCAATGCAGTTACAGTGTAATAAGTTGTGCAATGTGCTT
TGAGTTGGGAGCTGGTCACTTGCTTACTTGTAAACTAGGGACAGTATTTG
CATGGAGAAAGTGTGAGGATGAACTGAAGCTTTGTTGGATGGCTAATTCA
CAACAATCTTCCCAAAGTCGGAAATATGTTCATCGTAGTCCTAGTGTTTC
TCTTGACCCAAATCGGGCATCGGACCTTGTACATCATAGGGAGGATTTGA
CTGATTTTCTGTTACCAGACTAA

protein sequence of CMJ_chr3_020570.1_cmj_v1

>CMJ_chr3_020570.1_cmj_v1 ID=CMJ_chr3_020570.1_cmj_v1; Name=CMJ_chr3_020570.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=141bp
MKFYLDDIPGDSLANSNFQTHLVVTGLLPDTSLLTCTGHFCSVLLATIQG
RKIIQCSYSVISCAMCFELGAGHLLTCKLGTVFAWRKCEDELKLCWMANS
QQSSQSRKYVHRSPSVSLDPNRASDLVHHREDLTDFLLPD*

mRNA from alignment at chr3:37265275..37266438-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=1164bp; location=Sequence derived from: chr3:37265275..37266438- (Citrus maxima
ATGAAATTTTACTTGGATGATATTCCTGGTGACAGGTTCTTTCTGGGTAG
CTGTAACAGAATGGTTTTTAATTTGAACTTGCCCAGTTTAGCCAACTCCA
ACTTCCAGACTCATCTTGTTGTTACTGGCTTACTGCCTGACACTAGCTTG
TTGACATGCACCGGCCATTTTTGTTCAGTGCTTCTCGCCACTATTCAGGT
ATCAATTTTGGTTGCTATAAGATAACCACATAAGTTAATTGTATGCTGTA
AAAGCTAGTCATAGTTTTGCAATGGTTCAAAGTTCTAACAACATAGTTCT
TGTTGTGTTTGCTGTAAAAGAGTGCCGAGTCTTTTTAAATTCAACCTGAA
ACAAATTATTTTCTATATATTTGTCAATTAGAAGGAAACCAGGGCCCAAC
CTTTCAAATCTATGAGCCTGCTCCGTTTTAGCAAATTTGTGTGTAATAGT
ATGAACAGTTTTATTGTCATTTGAATTTCTCTGGCCTTTCAAGGGCAGGA
AAATAATTCAATGCAGTTACAGTGTAATAAGTTGTGCAATGTGCTTTGAG
TTGGGAGCTGGTCACTTGCTTACTTGTAAACTAGGGACAGTATTTGCATG
GAGAAAGTGTGAGGATGAACTGAAGTGAAGAGTTAGGAAAGAAAGGTCAT
TGCAGCTAATAATTGTGTGTCGAAACATCTATAGATACCATTATGCATCA
CTAGATCTTTGATTAAAAGATGATTCTGTTAATCAATAATTGCTATATTT
TATAGTTATTGCTTGCAGATGATACTGTCATTTGAACTACCCATTTGCCT
TAATCCCACTTCTCAAATTCAGCAGCAGTAGCACCAAGATGGGATCCCCT
GAGAACTCAATTTATGTAAGTCATATAACTCAGTCTCTCCAAAGCCATAT
TTGAGTTTTGACTATTGTTAACAGCTGATAGAAAATAACTTGAATGTTGG
TAATTAAATACTGCAGATAACTGTTATGTGATGGCTTCTGAGTCTGGGAA
CCATATTATCTCTGCTCAGGCTTTGTTGGATGGCTAATTCACAACAATCT
TCCCAAAGTCGGAAATATGTTCATCGTAGTCCTAGTGTTTCTCTTGACCC
AAATCGGGCATCGGACCTTGTACATCATAGGGAGGATTTGACTGATTTTC
TGTTACCAGACTAA

Coding sequence (CDS) from alignment at chr3:37265275..37266438-

>CMJ_chr3_020570.1_cmj_v1 ID=CMJ_chr3_020570.1_cmj_v1; Name=CMJ_chr3_020570.1; organism=Citrus maxima; type=CDS; length=423bp; location=Sequence derived from: chr3:37265275..37266438- (Citrus maxima
ATGAAATTTTACTTGGATGATATTCCTGGTGACAGTTTAGCCAACTCCAA
CTTCCAGACTCATCTTGTTGTTACTGGCTTACTGCCTGACACTAGCTTGT
TGACATGCACCGGCCATTTTTGTTCAGTGCTTCTCGCCACTATTCAGGGC
AGGAAAATAATTCAATGCAGTTACAGTGTAATAAGTTGTGCAATGTGCTT
TGAGTTGGGAGCTGGTCACTTGCTTACTTGTAAACTAGGGACAGTATTTG
CATGGAGAAAGTGTGAGGATGAACTGAAGCTTTGTTGGATGGCTAATTCA
CAACAATCTTCCCAAAGTCGGAAATATGTTCATCGTAGTCCTAGTGTTTC
TCTTGACCCAAATCGGGCATCGGACCTTGTACATCATAGGGAGGATTTGA
CTGATTTTCTGTTACCAGACTAA