CMJ_chr3_021260.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_021260.1 vs. ExPASy TrEMBL
Match: V4TWW2|V4TWW2_CITCL (Lectin_legB domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10009223mg PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 3.004e-21 Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0 Query: 24 PLKHTNSSTVRSFETSFTFSITPYKGQRPGHGLVFIFVPSAGIQGSRS 71
PLKHTNSST+RSFETSFTFSITPY GQRPGHGLVFIFVPSA IQG+ +
Sbjct: 67 PLKHTNSSTIRSFETSFTFSITPYNGQRPGHGLVFIFVPSADIQGAAA 114
BLAST of CMJ_chr3_021260.1 vs. ExPASy TrEMBL
Match: A0A067FH13|A0A067FH13_CITSI (Lectin_legB domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g024824mg PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 3.004e-21 Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0 Query: 24 PLKHTNSSTVRSFETSFTFSITPYKGQRPGHGLVFIFVPSAGIQGSRS 71
PLKHTNSST+RSFETSFTFSITPY GQRPGHGLVFIFVPSA IQG+ +
Sbjct: 67 PLKHTNSSTIRSFETSFTFSITPYNGQRPGHGLVFIFVPSADIQGAAA 114
BLAST of CMJ_chr3_021260.1 vs. ExPASy TrEMBL
Match: A0A2H5P661|A0A2H5P661_CITUN (Lectin_legB domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_107380 PE=4 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 4.220e-20 Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0 Query: 24 PLKHTNSSTVRSFETSFTFSITPYKGQRPGHGLVFIFVPSAGIQGSRS 71
PLKHTNSST+RSFETSFTFSITPY GQRPGHGLVFIFVPSA IQG+ +
Sbjct: 281 PLKHTNSSTIRSFETSFTFSITPYNGQRPGHGLVFIFVPSADIQGAAA 328
BLAST of CMJ_chr3_021260.1 vs. ExPASy TrEMBL
Match: A0A2H5P662|A0A2H5P662_CITUN (Lectin_legB domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_107380 PE=4 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 5.452e-20 Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0 Query: 24 PLKHTNSSTVRSFETSFTFSITPYKGQRPGHGLVFIFVPSAGIQGSRS 71
PLKHTNSST+RSFETSFTFSITPY GQRPGHGLVFIFVPSA IQG+ +
Sbjct: 306 PLKHTNSSTIRSFETSFTFSITPYNGQRPGHGLVFIFVPSADIQGAAA 353
BLAST of CMJ_chr3_021260.1 vs. ExPASy TrEMBL
Match: V4UG47|V4UG47_CITCL (Lectin_legB domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10009333mg PE=4 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.260e-14 Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 0 Query: 24 PLKHTNSSTVRSFETSFTFSITPYKGQRPGHGLVFIFVPSAGIQGSRS 71
PL+ TNS FETSFTFSITPYKGQ PGHGLVFI VPSAGIQG+ +
Sbjct: 67 PLRRTNS-----FETSFTFSITPYKGQLPGHGLVFILVPSAGIQGAAA 109
BLAST of CMJ_chr3_021260.1 vs. ExPASy TrEMBL
Match: A0A2H5P639|A0A2H5P639_CITUN (Lectin_legB domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_107400 PE=4 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 5.623e-14 Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0 Query: 24 PLKHTNSSTVRSFETSFTFSITPYKGQRPGHGLVFIFVPSAGIQGS 69
PL+ TNS FETSFTFSITPYKGQ PGHGLVFI VPSAGIQG+
Sbjct: 67 PLRRTNS-----FETSFTFSITPYKGQLPGHGLVFILVPSAGIQGA 107
BLAST of CMJ_chr3_021260.1 vs. ExPASy TrEMBL
Match: A0A2H5P6X4|A0A2H5P6X4_CITUN (Lectin_legB domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_107390 PE=4 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.463e-13 Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 0 Query: 24 PLKHTNSSTVRSFETSFTFSITPYKGQRPGHGLVFIFVPSAGIQGSRS 71
PL+ TNS FETSFTFSITPYKGQ PGHGLVFI VPSAGIQG+ +
Sbjct: 67 PLRRTNS-----FETSFTFSITPYKGQLPGHGLVFILVPSAGIQGAAA 109
BLAST of CMJ_chr3_021260.1 vs. ExPASy TrEMBL
Match: A0A067F8K8|A0A067F8K8_CITSI (Lectin_legB domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g010476mg PE=4 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 3.296e-13 Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 0 Query: 24 PLKHTNSSTVRSFETSFTFSITPYKGQRPGHGLVFIFVPSAGIQGSRS 71
PL+ TNS FETSFTFSITPYKGQ PGHGLVFI VPSAGIQG+ +
Sbjct: 67 PLRRTNS-----FETSFTFSITPYKGQLPGHGLVFILVPSAGIQGAAA 109
BLAST of CMJ_chr3_021260.1 vs. ExPASy TrEMBL
Match: A0A5N5FDN9|A0A5N5FDN9_9ROSA (L-type lectin-domain containing receptor kinase VII.1-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_002224 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.890e-11 Identity = 31/48 (64.58%), Postives = 33/48 (68.75%), Query Frame = 0 Query: 24 PLKHTNSSTVRSFETSFTFSITPYKGQRPGHGLVFIFVPSAGIQGSRS 71
P K NSS V F TSF FSI PYK PGHGLVFIFVP GI+G+ S
Sbjct: 75 PTKEPNSSYVYPFSTSFIFSIAPYKNTLPGHGLVFIFVPETGIKGTSS 122
BLAST of CMJ_chr3_021260.1 vs. ExPASy TrEMBL
Match: A0A540KA78|A0A540KA78_MALBA (Protein kinase domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_043336 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 3.064e-11 Identity = 31/48 (64.58%), Postives = 33/48 (68.75%), Query Frame = 0 Query: 24 PLKHTNSSTVRSFETSFTFSITPYKGQRPGHGLVFIFVPSAGIQGSRS 71
P K NSS V F TSF FSI PYK PGHGLVFIFVP GI+G+ S
Sbjct: 75 PTKDPNSSYVHPFSTSFIFSIAPYKNTLPGHGLVFIFVPETGIKGTSS 122
BLAST of CMJ_chr3_021260.1 vs. ExPASy Swiss-Prot
Match: LRK71_ARATH (L-type lectin-domain containing receptor kinase VII.1 OS=Arabidopsis thaliana OX=3702 GN=LECRK71 PE=2 SV=1) HSP 1 Score: 56.6102 bits (135), Expect = 4.788e-10 Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 0 Query: 15 HDQPLQTHQPLKHTNSSTVRSFETSFTFSITPYKGQRPGHGLVFIFVPSAGIQGSRS 71
+++ ++T P+ +S+V F TSF F++ PYK PGHG+VF+F PS GI GS S
Sbjct: 63 YNRTIRTKDPI----TSSVLPFSTSFIFTMAPYKNTLPGHGIVFLFAPSTGINGSSS 115
BLAST of CMJ_chr3_021260.1 vs. Araport11
Match: AT4G04960.2 (| Concanavalin A-like lectin protein kinase family protein | Chr4:2533096-2534912 FORWARD LENGTH=576 | 201606) HSP 1 Score: 59.6918 bits (143), Expect = 4.708e-12 Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 0 Query: 15 HDQPLQTHQPLKHTNSSTVRSFETSFTFSITPYKGQRPGHGLVFIFVPSAGIQGSRS 71
+++ ++T P+ +S+V F TSF F++ PYK PGHG+VF+F PS GI GS S
Sbjct: 63 YNRTIRTKDPI----TSSVLPFSTSFIFTMAPYKNTLPGHGIVFLFAPSTGINGSSS 115
BLAST of CMJ_chr3_021260.1 vs. Araport11
Match: AT4G04960.1 (| Concanavalin A-like lectin protein kinase family protein | Chr4:2533096-2535156 FORWARD LENGTH=686 | 201606) HSP 1 Score: 56.6102 bits (135), Expect = 4.898e-11 Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 0 Query: 15 HDQPLQTHQPLKHTNSSTVRSFETSFTFSITPYKGQRPGHGLVFIFVPSAGIQGSRS 71
+++ ++T P+ +S+V F TSF F++ PYK PGHG+VF+F PS GI GS S
Sbjct: 63 YNRTIRTKDPI----TSSVLPFSTSFIFTMAPYKNTLPGHGIVFLFAPSTGINGSSS 115 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_021260.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_021260.1 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 1 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_021260.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_021260.1_cmj_v1 ID=CMJ_chr3_021260.1_cmj_v1; Name=CMJ_chr3_021260.1; organism=Citrus maxima; type=mRNA; length=222bpback to top protein sequence of CMJ_chr3_021260.1_cmj_v1 >CMJ_chr3_021260.1_cmj_v1 ID=CMJ_chr3_021260.1_cmj_v1; Name=CMJ_chr3_021260.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=74bpback to top mRNA from alignment at chr3:37732254..37732475- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=222bp; location=Sequence derived from: chr3:37732254..37732475- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:37732254..37732475- >CMJ_chr3_021260.1_cmj_v1 ID=CMJ_chr3_021260.1_cmj_v1; Name=CMJ_chr3_021260.1; organism=Citrus maxima; type=CDS; length=222bp; location=Sequence derived from: chr3:37732254..37732475- (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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