CMJ_chr3_021520.2
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_021520.2 vs. ExPASy TrEMBL
Match: A0A067H7N4|A0A067H7N4_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g025184mg PE=4 SV=1) HSP 1 Score: 505.753 bits (1301), Expect = 0.000e+0 Identity = 249/251 (99.20%), Postives = 251/251 (100.00%), Query Frame = 0 Query: 1 MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKEGRLFVIVAPVLRFADNLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNIINAEL 251 MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPK+GRLFVIVAPVLRFAD+LGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNIINAEL Sbjct: 1 MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNIINAEL 251
BLAST of CMJ_chr3_021520.2 vs. ExPASy TrEMBL
Match: A0A067GY18|A0A067GY18_CITSI (PsbP domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g025184mg PE=4 SV=1) HSP 1 Score: 475.322 bits (1222), Expect = 1.108e-168 Identity = 234/246 (95.12%), Postives = 241/246 (97.97%), Query Frame = 0 Query: 1 MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKEGRLFVIVAPVLRFADNLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNI 246 MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPK+GRLFVIVAPVLRFAD+LGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNG+ + + ++ Sbjct: 1 MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYTDL 246
BLAST of CMJ_chr3_021520.2 vs. ExPASy TrEMBL
Match: V4T374|V4T374_CITCL (PsbP domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10002228mg PE=4 SV=1) HSP 1 Score: 468.003 bits (1203), Expect = 9.113e-166 Identity = 231/246 (93.90%), Postives = 238/246 (96.75%), Query Frame = 0 Query: 1 MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKEGRLFVIVAPVLRFADNLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNI 246 MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPK+GRLFVIVAPVLRFADNLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSM+VEE GR YYRYELEPPHVLITATAAGNRLYLFSVTGNG+ + + ++ Sbjct: 1 MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADNLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMNVEEHSGRTYYRYELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYTDL 246
BLAST of CMJ_chr3_021520.2 vs. ExPASy TrEMBL
Match: A0A2H5NIB8|A0A2H5NIB8_CITUN (PsbP domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_047700 PE=4 SV=1) HSP 1 Score: 466.077 bits (1198), Expect = 4.827e-165 Identity = 230/246 (93.50%), Postives = 238/246 (96.75%), Query Frame = 0 Query: 1 MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKEGRLFVIVAPVLRFADNLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNI 246 MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPK+GRLFVIVAPVLRFAD+LGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSM+VEE GR YYRYELEPPHVLITATAAGNRLYLFSVTGNG+ + + ++ Sbjct: 1 MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMNVEEHSGRTYYRYELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYTDL 246
BLAST of CMJ_chr3_021520.2 vs. ExPASy TrEMBL
Match: A0A5C7H7S9|A0A5C7H7S9_9ROSI (PsbP domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_022267 PE=4 SV=1) HSP 1 Score: 386.341 bits (991), Expect = 2.339e-133 Identity = 195/253 (77.08%), Postives = 217/253 (85.77%), Query Frame = 0 Query: 1 MGTTLFSSCSFLAQI--SSVENGISRV-KAVACSTGSDS----VDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKEGRLFVIVAPVLRFADNLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNI 246 MGT+LF++CSF + +S E GISRV K VAC SD G + RRSVL+SGASL S VLGFP +GLAVVKQGLLAGR+PGLSEPDEQGWRTYRRPD+KSGGHGVGWSPIIPY FS+PQEWDEVPVSIADLGGTEIDLRFASPKEGRLFVIVAPVLRFADNLGD+ATIEKIGPPEKVINAFGPEVIGENVEGKVLSM+V E GR YY+YELEPPHVLITATAAGNR Y+F+VTG+G+ + + ++ Sbjct: 1 MGTSLFTNCSFSWRYHHTSPEIGISRVNKTVACYRASDGETEIHSGAVNRRSVLLSGASLGCSTVLGFPGEGLAVVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSIPQEWDEVPVSIADLGGTEIDLRFASPKEGRLFVIVAPVLRFADNLGDNATIEKIGPPEKVINAFGPEVIGENVEGKVLSMEVAEHSGRTYYQYELEPPHVLITATAAGNRFYMFNVTGSGLQWKRHYKDL 253
BLAST of CMJ_chr3_021520.2 vs. ExPASy TrEMBL
Match: A0A6P4BJ01|A0A6P4BJ01_ZIZJJ (psbP domain-containing protein 4, chloroplastic OS=Ziziphus jujuba OX=326968 GN=LOC107435991 PE=4 SV=1) HSP 1 Score: 386.341 bits (991), Expect = 3.631e-133 Identity = 198/268 (73.88%), Postives = 221/268 (82.46%), Query Frame = 0 Query: 1 MGTTLFSSCSF---------------LAQISSVENGISRVKAVACSTGSDSVDG-------VMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKEGRLFVIVAPVLRFADNLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNI 246 MGTTLF+SCSF LAQ SS+ENGISR K S G+ VDG KRRSVL SG SL+SSAVLGFP+D LAVVKQGLLAGRVPGLSEP+E+GWRTYRRPDDKSGGHGVGWSPIIPY FSVP+EW+EVPVSIADLGGTEIDLRFA+ KEGRLFVIVAPVLRFADNLGDDA IE+IGPP+KVI+AFGPEVIGENVEGKVLS++V E GRKYY+YELEPPHVLITATAAGNRLYLF+VTG+G+ + + ++ Sbjct: 1 MGTTLFTSCSFTWTCHHQQTVPSHYLLAQ-SSLENGISRTKVAIDSRGNSLVDGEAEKLSGFFKRRSVLASGISLLSSAVLGFPSDSLAVVKQGLLAGRVPGLSEPNEEGWRTYRRPDDKSGGHGVGWSPIIPYSFSVPEEWEEVPVSIADLGGTEIDLRFANSKEGRLFVIVAPVLRFADNLGDDAKIEQIGPPDKVIDAFGPEVIGENVEGKVLSINVSEHSGRKYYQYELEPPHVLITATAAGNRLYLFAVTGSGLQWKRHYNDL 267
BLAST of CMJ_chr3_021520.2 vs. ExPASy TrEMBL
Match: A0A6P6AT52|A0A6P6AT52_DURZI (psbP domain-containing protein 4, chloroplastic-like isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111312223 PE=4 SV=1) HSP 1 Score: 384.415 bits (986), Expect = 2.231e-132 Identity = 199/266 (74.81%), Postives = 217/266 (81.58%), Query Frame = 0 Query: 1 MGTTLFSSCSFL-----AQI--------SSVENGISRVKAVACSTGSDSVD-------GVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKEGRLFVIVAPVLRFADNLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNI 246 MGTTLFS CS Q+ SS ENGISR KAV S G+ VD G++ RRS+LVSG SL SSAVLGFP DGLAVVKQGLLAGR+PGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPY FSVPQ+W+EVPVSIADLGGTEIDLRFAS KEGRLFVIVAPVLRFADNLG +ATIEKIGPPEKVINAFGPEVIGENVEGKVLS++ E GR YY+YELEPPH LITATAAGNRLYLFSVTG+G+ + + ++ Sbjct: 1 MGTTLFSGCSRFPWKCHQQVATSSSFAHSSPENGISRAKAVPGSRGNWLVDREKEESWGILSRRSILVSGISLASSAVLGFPGDGLAVVKQGLLAGRIPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLGGTEIDLRFASSKEGRLFVIVAPVLRFADNLGQNATIEKIGPPEKVINAFGPEVIGENVEGKVLSINTAEHDGRMYYQYELEPPHALITATAAGNRLYLFSVTGSGLQWKRHYKDL 266
BLAST of CMJ_chr3_021520.2 vs. ExPASy TrEMBL
Match: A0A5N6RM99|A0A5N6RM99_9ROSI (PsbP domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_018374 PE=4 SV=1) HSP 1 Score: 383.259 bits (983), Expect = 5.913e-132 Identity = 197/267 (73.78%), Postives = 221/267 (82.77%), Query Frame = 0 Query: 1 MGTTLFSSCSF--------------LAQISSVENGISRVKAVACSTGSDSV-------DGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKEGRLFVIVAPVLRFADNLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNI 246 MGTTLF+SCSF LAQ SS+E+GISR K A S S+ V G+MKRRSVLVSG SL+SSAVLG P +GLAVVKQGLLAGR+PGLSEPDEQGWRTYRRPD+KSGGHGVGWSPIIPY FSVPQ+W+EVPVSIADLGGTEIDLRF SPKEGRLFVIVAPVLRFAD+LGD+ATIE+IGPPEKVINAFGPEVIGENVEGKVLSM+V E GR YY++ELEPPH LITATAAGNRLYLF+VT +G+ + + ++ Sbjct: 1 MGTTLFTSCSFSWRFHRQIIPSNHLLAQ-SSLESGISRAKVTADSGESELVGGEIGKCSGLMKRRSVLVSGVSLMSSAVLGSPREGLAVVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSPKEGRLFVIVAPVLRFADDLGDNATIERIGPPEKVINAFGPEVIGENVEGKVLSMNVAEHLGRTYYQFELEPPHALITATAAGNRLYLFNVTASGLQWKRHYNDL 266
BLAST of CMJ_chr3_021520.2 vs. ExPASy TrEMBL
Match: B9SJK7|B9SJK7_RICCO (Thylakoid lumenal 29.8 kDa protein, chloroplast, putative OS=Ricinus communis OX=3988 GN=RCOM_0138880 PE=4 SV=1) HSP 1 Score: 382.104 bits (980), Expect = 1.112e-131 Identity = 190/260 (73.08%), Postives = 213/260 (81.92%), Query Frame = 0 Query: 1 MGTTLFSSCSF--------------LAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKEGRLFVIVAPVLRFADNLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNI 246 MGTT+F+SCSF L SS E G+SR++A + G++KRRS LVSG SL SS +LGFP DGLA VKQGLLAGR+PGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPY F VPQEW+EVPVSIADLGGTEIDLRF+S KEGRLFVIVAPVLRFAD+LGD+ATIE+IGPPEKVINAFGPEVIGENVEGKVLSM+V E GR YY++ELEPPHVLITATAAGNRLYLFSVTGNG+ + + ++ Sbjct: 1 MGTTIFTSCSFPWKYHHQQMVPSSHLLGHSSQETGVSRIRATIEPREFEKPIGLLKRRSALVSGISLASSTILGFPGDGLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYAFKVPQEWEEVPVSIADLGGTEIDLRFSSSKEGRLFVIVAPVLRFADDLGDNATIERIGPPEKVINAFGPEVIGENVEGKVLSMNVAEHSGRMYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDL 260
BLAST of CMJ_chr3_021520.2 vs. ExPASy TrEMBL
Match: A0A2N9FXQ6|A0A2N9FXQ6_FAGSY (PsbP domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19807 PE=4 SV=1) HSP 1 Score: 382.104 bits (980), Expect = 1.436e-131 Identity = 196/267 (73.41%), Postives = 217/267 (81.27%), Query Frame = 0 Query: 1 MGTTLFSSCSF--------------LAQISSVENGISRVKAVACSTGSDSVDG-------VMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKEGRLFVIVAPVLRFADNLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNI 246 MGT LF+SCSF LAQ SS+ENGISR K +A S S VDG +MKRRSV VSG SLISSAVLG P DGLA+VKQGLLAGR+PGLS+PDEQGWRTYRRPD+KSGGHGVGWSPIIPY FSVPQEW+EVPVSIADLGGTEIDLRF S KEGRLFVIVAPVLRF+D+LGD+A IE IGPPEKVINAFGPEVIGENVEGKV+SM+V E GR YY+YELEPPH LITATAAGNRLYLF+VT NG+ + + ++ Sbjct: 1 MGTALFTSCSFSWRYKQQIFPSSHLLAQ-SSLENGISRAKVIADSGESKLVDGEIEKWSGLMKRRSVFVSGVSLISSAVLGSPRDGLALVKQGLLAGRIPGLSDPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQEWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVLRFSDDLGDNAKIELIGPPEKVINAFGPEVIGENVEGKVISMNVVEHSGRTYYQYELEPPHALITATAAGNRLYLFNVTANGLQWKRHYSDL 266
BLAST of CMJ_chr3_021520.2 vs. ExPASy Swiss-Prot
Match: PPD4_ARATH (PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD4 PE=1 SV=2) HSP 1 Score: 332.798 bits (852), Expect = 7.884e-115 Identity = 173/250 (69.20%), Postives = 195/250 (78.00%), Query Frame = 0 Query: 1 MGTTLFSSC---SFLAQISSVENGISRVKAVACSTGSDS-VDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKEGRLFVIVAPVLRFADNLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNI 246 M T L C S +IS+ + S + + D V+ RRSV+ SG + S+ L FP +GLAVVKQGLLAGRVPGLSEPDE+GWRTYRRPD+KSGGHGVGWSPIIPY FSVPQ+W+EVPVSIADLGGTEIDLRFASPKEGRL VIVAPVLRFADNLGDD IE IG P KVINAFGPEVIGENVEGKVLS +V E GR YY++ELEPPHVLITATAAGNRLYLFSVTGNG+ + + ++ Sbjct: 2 METALLRYCVNFSGHKKISAHQRSNSEIPKTSPGGCEDEWCARVLSRRSVMASGL-VSSTTALAFPREGLAVVKQGLLAGRVPGLSEPDEEGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIGQPAKVINAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDL 250
BLAST of CMJ_chr3_021520.2 vs. ExPASy Swiss-Prot
Match: PPD6_ARATH (PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD6 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 3.828e-14 Identity = 60/211 (28.44%), Postives = 103/211 (48.82%), Query Frame = 0 Query: 42 KRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIAD-LGGTE---------IDLRFASPKEGRLFVIVAPVLRFADNLGDDATIEKIGPPEKVINAFGPEVIGENVEG-KVLSMDVEELCGRKYYRYELEPP------HVLITATAAGNRLYLFSVTGN 235 +RR +L+ A I A+L ++ ++ + +P LS D +P D + PY F +P W ++ IA+ L G I+++F + K+G++ V+ +P++R + +ATIE +G PEKVI + GP V G + + ++L +E++ + YY+Y LE P H L ATA G+ + LF V+ Sbjct: 41 RRRELLLKSAVAIP-AILQLKEAPISAAREVEVGSYLP-LSPSDPSFVLFKAKPSDTPALRAGN---VQPYQFVLPPNWKQL--RIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTNK--PNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVVLFVVSAT 242
BLAST of CMJ_chr3_021520.2 vs. Araport11
Match: AT1G77090.1 (| thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) | Chr1:28960576-28961875 REVERSE LENGTH=260 | 201606) HSP 1 Score: 332.798 bits (852), Expect = 8.066e-116 Identity = 173/250 (69.20%), Postives = 195/250 (78.00%), Query Frame = 0 Query: 1 MGTTLFSSC---SFLAQISSVENGISRVKAVACSTGSDS-VDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKEGRLFVIVAPVLRFADNLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNI 246 M T L C S +IS+ + S + + D V+ RRSV+ SG + S+ L FP +GLAVVKQGLLAGRVPGLSEPDE+GWRTYRRPD+KSGGHGVGWSPIIPY FSVPQ+W+EVPVSIADLGGTEIDLRFASPKEGRL VIVAPVLRFADNLGDD IE IG P KVINAFGPEVIGENVEGKVLS +V E GR YY++ELEPPHVLITATAAGNRLYLFSVTGNG+ + + ++ Sbjct: 2 METALLRYCVNFSGHKKISAHQRSNSEIPKTSPGGCEDEWCARVLSRRSVMASGL-VSSTTALAFPREGLAVVKQGLLAGRVPGLSEPDEEGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIGQPAKVINAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDL 250
BLAST of CMJ_chr3_021520.2 vs. Araport11
Match: AT3G56650.1 (| thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) | Chr3:20984807-20985913 FORWARD LENGTH=262 | 201606) HSP 1 Score: 73.1738 bits (178), Expect = 3.916e-15 Identity = 60/211 (28.44%), Postives = 103/211 (48.82%), Query Frame = 0 Query: 42 KRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIAD-LGGTE---------IDLRFASPKEGRLFVIVAPVLRFADNLGDDATIEKIGPPEKVINAFGPEVIGENVEG-KVLSMDVEELCGRKYYRYELEPP------HVLITATAAGNRLYLFSVTGN 235 +RR +L+ A I A+L ++ ++ + +P LS D +P D + PY F +P W ++ IA+ L G I+++F + K+G++ V+ +P++R + +ATIE +G PEKVI + GP V G + + ++L +E++ + YY+Y LE P H L ATA G+ + LF V+ Sbjct: 41 RRRELLLKSAVAIP-AILQLKEAPISAAREVEVGSYLP-LSPSDPSFVLFKAKPSDTPALRAGN---VQPYQFVLPPNWKQL--RIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTNK--PNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVVLFVVSAT 242 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_021520.2 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_021520.2 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 2 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_021520.2 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_021520.2_cmj_v1 ID=CMJ_chr3_021520.2_cmj_v1; Name=CMJ_chr3_021520.2; organism=Citrus maxima; type=mRNA; length=756bpback to top protein sequence of CMJ_chr3_021520.2_cmj_v1 >CMJ_chr3_021520.2_cmj_v1 ID=CMJ_chr3_021520.2_cmj_v1; Name=CMJ_chr3_021520.2_cmj_v1; organism=Citrus maxima; type=polypeptide; length=252bpback to top mRNA from alignment at chr3:37895053..37899197- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=4145bp; location=Sequence derived from: chr3:37895053..37899197- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:37895053..37899197- >CMJ_chr3_021520.2_cmj_v1 ID=CMJ_chr3_021520.2_cmj_v1; Name=CMJ_chr3_021520.2; organism=Citrus maxima; type=CDS; length=756bp; location=Sequence derived from: chr3:37895053..37899197- (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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