CMJ_chr3_022070.3 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr3_022070.3
Unique Name	CMJ_chr3_022070.3_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	258

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caucmjL119	Citrus australis genome v1.0 (UQ)	Citrus australis
cccmjL105	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cmjcsR212	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
cmjdvaR115	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
clecmjL625	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmjdvbR109	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
clecmjL661	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmjfhsR203	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmjzkR211	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
cmcmjL206	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmjcsnR264	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjcsnR272	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjminR0308	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjminR0363	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjeglR0461	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR0544	Citrus glauca CRC3463 genome v1	Citrus glauca
ccrcmjL223	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL565	Citrus australasica CRC3672 genome v1	Citrus australasica
cmjcsgR143	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
cmjcsgR151	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
abhcmjL143	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
cizcmjL127	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cllcmjL140	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cmjcmxR231	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmmR153	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
caacmjL504	Citrus australasica cv. AZM genome v1.0	Citrus australasica
chhcmjL187	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
cmjmpkR152	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
clhcmjL363	Clausena lansium cv. HP genome v1.0	Clausena lansium
cmjmpjR204	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
aeacmjL359	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
cigcmjL520	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cmhcmjL143	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmjlssR221	Luvunga scandens cv. SYT genome v1.0	Luvunga scandens
clxcmjL488	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
cmjcsjR269	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR292	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjneiR157	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cmjcraR257	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR272	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cchcmjL108	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
ciucmjL164	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL540	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgacmjL166	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL549	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgucmjL174	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL537	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cmjcumR267	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
cmjcrcR168	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcstR159	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
cmjcrmR246	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR260	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcriR258	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR283	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr3_022070	CMJ_chr3_022070_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_022070.3.exon2	CMJ_chr3_022070.3.exon2_cmj_v1	Citrus maxima	exon
CMJ_chr3_022070.3.exon1	CMJ_chr3_022070.3.exon1_cmj_v1	Citrus maxima	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_022070.3.utr3.1	CMJ_chr3_022070.3.utr3.1_cmj_v1	Citrus maxima	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_022070.3.cds.2	CMJ_chr3_022070.3.cds.2_cmj_v1	Citrus maxima	CDS
CMJ_chr3_022070.3.cds.1	CMJ_chr3_022070.3.cds.1_cmj_v1	Citrus maxima	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_022070.3.utr5.1	CMJ_chr3_022070.3.utr5.1_cmj_v1	Citrus maxima	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_022070.3_cmj_v1	CMJ_chr3_022070.3_cmj_v1	Citrus maxima	polypeptide
CMJ_chr3_022070.3_cmj_v1	CMJ_chr3_022070.3_cmj_v1-protein	Citrus maxima	polypeptide

Homology

[Close]

BLAST of CMJ_chr3_022070.3 vs. ExPASy TrEMBL
Match: A0A2H5NI00|A0A2H5NI00_CITUN (U6 snRNA-associated Sm-like protein LSm3 OS=Citrus unshiu OX=55188 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.059e-52
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0

Query:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFKL 85
            MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFKL
Sbjct:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFKL 85

[Close]

BLAST of CMJ_chr3_022070.3 vs. ExPASy TrEMBL
Match: A0A067GVI8|A0A067GVI8_CITSI (U6 snRNA-associated Sm-like protein LSm3 OS=Citrus sinensis OX=2711 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.059e-52
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0

Query:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFKL 85
            MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFKL
Sbjct:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFKL 85

[Close]

BLAST of CMJ_chr3_022070.3 vs. ExPASy TrEMBL
Match: M5WRS2|M5WRS2_PRUPE (U6 snRNA-associated Sm-like protein LSm3 OS=Prunus persica OX=3760 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.787e-44
Identity = 72/83 (86.75%), Postives = 78/83 (93.98%), Query Frame = 0

Query:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNF 83
            MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VT+VEIDDETYEEIVRVC +  ++ + F
Sbjct:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSVEIDDETYEEIVRVCDSHSVVFITF 83

[Close]

BLAST of CMJ_chr3_022070.3 vs. ExPASy TrEMBL
Match: A0A7N0UCE9|A0A7N0UCE9_KALFE (U6 snRNA-associated Sm-like protein LSm3 OS=Kalanchoe fedtschenkoi OX=63787 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.417e-43
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0

Query:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCN 75
            MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV+TTVEIDDETYEEIVRVC +
Sbjct:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITTVEIDDETYEEIVRVCLS 75

[Close]

BLAST of CMJ_chr3_022070.3 vs. ExPASy TrEMBL
Match: A0A7J8QXR7|A0A7J8QXR7_GOSDV (U6 snRNA-associated Sm-like protein LSm3 (Fragment) OS=Gossypium davidsonii OX=34287 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.818e-43
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 0

Query:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNL 76
            MA+EE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVEIDDETYEEIVRVC N 
Sbjct:    1 MATEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRVCYNF 76

[Close]

BLAST of CMJ_chr3_022070.3 vs. ExPASy TrEMBL
Match: A0A6I9QPQ4|A0A6I9QPQ4_ELAGV (U6 snRNA-associated Sm-like protein LSm3 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105038012 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.542e-43
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 0

Query:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCN 75
            MASEEES V+EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV+TTVEIDDETYEEIVR+CC 
Sbjct:    1 MASEEESTVREPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITTVEIDDETYEEIVRLCCT 75

[Close]

BLAST of CMJ_chr3_022070.3 vs. ExPASy TrEMBL
Match: A0A7J8YN52|A0A7J8YN52_GOSAI (U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium aridum OX=34290 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.541e-43
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 0

Query:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVC 73
            MA+EE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVEIDDETYEEIVRVC
Sbjct:    1 MATEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRVC 73

[Close]

BLAST of CMJ_chr3_022070.3 vs. ExPASy TrEMBL
Match: A0A0D2PY79|A0A0D2PY79_GOSRA (U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium raimondii OX=29730 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.188e-43
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 0

Query:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVC 73
            MA+EE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVEIDDETYEEIVRVC
Sbjct:    1 MATEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRVC 73

[Close]

BLAST of CMJ_chr3_022070.3 vs. ExPASy TrEMBL
Match: F6GY26|F6GY26_VITVI (U6 snRNA-associated Sm-like protein LSm3 OS=Vitis vinifera OX=29760 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.615e-42
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 0

Query:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRV 72
            MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVEIDDETYEEIVRV
Sbjct:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRV 72

[Close]

BLAST of CMJ_chr3_022070.3 vs. ExPASy TrEMBL
Match: A0A2N9FHQ3|A0A2N9FHQ3_FAGSY (U6 snRNA-associated Sm-like protein LSm3 OS=Fagus sylvatica OX=28930 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.952e-42
Identity = 71/81 (87.65%), Postives = 73/81 (90.12%), Query Frame = 0

Query:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLL 81
            MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVEIDDETYEEIVR    +   L 
Sbjct:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRMMPFLF 81

[Close]

BLAST of CMJ_chr3_022070.3 vs. ExPASy Swiss-Prot
Match: LSM3B_ARATH (Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.153e-40
Identity = 63/73 (86.30%), Postives = 68/73 (93.15%), Query Frame = 0

Query:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVC 73
            M+ EEE+ V+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TTVEIDDETYEEIVR  
Sbjct:    1 MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTT 73

[Close]

BLAST of CMJ_chr3_022070.3 vs. ExPASy Swiss-Prot
Match: LSM3A_ARATH (Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.805e-39
Identity = 60/73 (82.19%), Postives = 69/73 (94.52%), Query Frame = 0

Query:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVC 73
            M+ EE++ V+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEEV+TT+EIDDETYEEIVR  
Sbjct:    1 MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTT 73

[Close]

BLAST of CMJ_chr3_022070.3 vs. ExPASy Swiss-Prot
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 6.869e-34
Identity = 56/76 (73.68%), Postives = 67/76 (88.16%), Query Frame = 0

Query:    7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCC-NLKILLL 81
            + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETYEEI +    N+ +L +
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFV 87

[Close]

BLAST of CMJ_chr3_022070.3 vs. ExPASy Swiss-Prot
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 6.869e-34
Identity = 56/76 (73.68%), Postives = 67/76 (88.16%), Query Frame = 0

Query:    7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCC-NLKILLL 81
            + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETYEEI +    N+ +L +
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFV 87

[Close]

BLAST of CMJ_chr3_022070.3 vs. ExPASy Swiss-Prot
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 6.869e-34
Identity = 56/76 (73.68%), Postives = 67/76 (88.16%), Query Frame = 0

Query:    7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCC-NLKILLL 81
            + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETYEEI +    N+ +L +
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFV 87

[Close]

BLAST of CMJ_chr3_022070.3 vs. ExPASy Swiss-Prot
Match: LSM3_DICDI (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum OX=44689 GN=lsm3 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.548e-32
Identity = 56/82 (68.29%), Postives = 66/82 (80.49%), Query Frame = 0

Query:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR-VCCNLKILLL 81
            M   EE  V+EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL DVEE +  VE D+ET EEI+R +  N+K+L +
Sbjct:    1 MDKREEGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIRNIKRNIKMLFV 82

[Close]

BLAST of CMJ_chr3_022070.3 vs. ExPASy Swiss-Prot
Match: LSM3_SCHPO (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=lsm3 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.747e-23
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 0

Query:    4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
            E   AV EPLDL+RLSLDE +YVKLR DREL G+LHAYD+HLNM+LGD EE+VT  + D+ET
Sbjct:    2 ESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFD-DEET 62

[Close]

BLAST of CMJ_chr3_022070.3 vs. ExPASy Swiss-Prot
Match: LSM3_YEAST (U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LSM3 PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 7.764e-12
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 0

Query:   12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVC 73
            PLDL++L+LDER+Y+KLR  R L G L A+D H N++L D  E  T  ++++E   E  R C
Sbjct:    4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE--TIYQLNNEELSESERRC 63

[Close]

BLAST of CMJ_chr3_022070.3 vs. Araport11
Match: AT1G76860.1 (| Small nuclear ribonucleoprotein family protein | Chr1:28854594-28855637 REVERSE LENGTH=98 | 201606)

HSP 1 Score: 132.109 bits (331), Expect = 1.180e-41
Identity = 63/73 (86.30%), Postives = 68/73 (93.15%), Query Frame = 0

Query:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVC 73
            M+ EEE+ V+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TTVEIDDETYEEIVR  
Sbjct:    1 MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTT 73

[Close]

BLAST of CMJ_chr3_022070.3 vs. Araport11
Match: AT1G21190.1 (| Small nuclear ribonucleoprotein family protein | Chr1:7419989-7420856 REVERSE LENGTH=97 | 201606)

HSP 1 Score: 127.102 bits (318), Expect = 7.985e-40
Identity = 60/73 (82.19%), Postives = 69/73 (94.52%), Query Frame = 0

Query:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVC 73
            M+ EE++ V+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEEV+TT+EIDDETYEEIVR  
Sbjct:    1 MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTT 73

The following BLAST results are available for this feature:

BLAST of CMJ_chr3_022070.3 vs. ExPASy TrEMBL
BLAST of CMJ_chr3_022070.3 vs. ExPASy Swiss-Prot
BLAST of CMJ_chr3_022070.3 vs. Araport11

BLAST of CMJ_chr3_022070.3 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
A0A2H5NI00\|A0A2H5NI00_CITUN	1.059e-52	100.00	U6 snRNA-associated Sm-like protein LSm3 OS=Citrus...	[more]
A0A067GVI8\|A0A067GVI8_CITSI	1.059e-52	100.00	U6 snRNA-associated Sm-like protein LSm3 OS=Citrus...	[more]
M5WRS2\|M5WRS2_PRUPE	1.787e-44	86.75	U6 snRNA-associated Sm-like protein LSm3 OS=Prunus...	[more]
A0A7N0UCE9\|A0A7N0UCE9_KALFE	1.417e-43	96.00	U6 snRNA-associated Sm-like protein LSm3 OS=Kalanc...	[more]
A0A7J8QXR7\|A0A7J8QXR7_GOSDV	1.818e-43	93.42	U6 snRNA-associated Sm-like protein LSm3 (Fragment...	[more]
A0A6I9QPQ4\|A0A6I9QPQ4_ELAGV	6.542e-43	93.33	U6 snRNA-associated Sm-like protein LSm3 OS=Elaeis...	[more]
A0A7J8YN52\|A0A7J8YN52_GOSAI	7.541e-43	95.89	U6 snRNA-associated Sm-like protein LSm3 OS=Gossyp...	[more]
A0A0D2PY79\|A0A0D2PY79_GOSRA	9.188e-43	95.89	U6 snRNA-associated Sm-like protein LSm3 OS=Gossyp...	[more]
F6GY26\|F6GY26_VITVI	1.615e-42	98.61	U6 snRNA-associated Sm-like protein LSm3 OS=Vitis ...	[more]
A0A2N9FHQ3\|A0A2N9FHQ3_FAGSY	4.952e-42	87.65	U6 snRNA-associated Sm-like protein LSm3 OS=Fagus ...	[more]

BLAST of CMJ_chr3_022070.3 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 8

Position :

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Match Name	E-value	Identity	Description
LSM3B_ARATH	1.153e-40	86.30	Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3...	[more]
LSM3A_ARATH	7.805e-39	82.19	Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3...	[more]
LSM3_MOUSE	6.869e-34	73.68	U6 snRNA-associated Sm-like protein LSm3 OS=Mus mu...	[more]
LSM3_HUMAN	6.869e-34	73.68	U6 snRNA-associated Sm-like protein LSm3 OS=Homo s...	[more]
LSM3_BOVIN	6.869e-34	73.68	U6 snRNA-associated Sm-like protein LSm3 OS=Bos ta...	[more]
LSM3_DICDI	5.548e-32	68.29	Probable U6 snRNA-associated Sm-like protein LSm3 ...	[more]
LSM3_SCHPO	1.747e-23	69.35	Probable U6 snRNA-associated Sm-like protein LSm3 ...	[more]
LSM3_YEAST	7.764e-12	46.77	U6 snRNA-associated Sm-like protein LSm3 OS=Saccha...	[more]

BLAST of CMJ_chr3_022070.3 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
AT1G76860.1	1.180e-41	86.30	\| Small nuclear ribonucleoprotein family protein \|...	[more]
AT1G21190.1	7.985e-40	82.19	\| Small nuclear ribonucleoprotein family protein \|...	[more]

InterPro

Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.30.30.100		coord: 1..82 e-value: 1.9E-20 score: 74.6
IPR001163	Sm domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 16..60 e-value: 3.2E-14 score: 52.4
IPR040002	U6 snRNA-associated Sm-like protein Lsm3	PANTHER	PTHR13110	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 1..73
IPR047575	Sm domain	PROSITE	PS52002	SM	coord: 11..85 score: 17.618696
IPR034105	Sm-like protein Lsm3	CDD	cd01730	LSm3	coord: 11..72 e-value: 4.5202E-38 score: 120.023
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 10..71

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:38265206..38267363-
coding sequence from alignment at chr3:38265206..38267363-

mRNA sequence

>CMJ_chr3_022070.3_cmj_v1 ID=CMJ_chr3_022070.3_cmj_v1; Name=CMJ_chr3_022070.3; organism=Citrus maxima; type=mRNA; length=258bp
ATGGCAAGCGAAGAAGAAAGCGCAGTGAAGGAGCCGTTGGATCTCATAAG
ACTCAGCCTCGACGAGCGCATCTACGTTAAGCTCCGATCCGACCGTGAAC
TCCGCGGCAAACTCCATGCATATGATCAACATTTAAACATGATTCTTGGG
GACGTCGAAGAAGTTGTTACTACAGTGGAAATCGATGATGAAACTTATGA
AGAGATTGTTCGGGTATGTTGTAATCTTAAAATTCTGTTATTGAATTTTA
AGTTATAG

protein sequence of CMJ_chr3_022070.3_cmj_v1

>CMJ_chr3_022070.3_cmj_v1 ID=CMJ_chr3_022070.3_cmj_v1; Name=CMJ_chr3_022070.3_cmj_v1; organism=Citrus maxima; type=polypeptide; length=86bp
MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG
DVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFKL*

mRNA from alignment at chr3:38265206..38267363-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=2158bp; location=Sequence derived from: chr3:38265206..38267363- (Citrus maxima
GGGTAACCAAGCTAAAATCCGGATCGTGGCCTACACAAATACAAGTAGCC
TGGGAAAAGCAACACAGATCGGGGAGAGAGAGAGAGAGAGAGAGCGAGGG
AGAGCGACTGAGCAAGAATGGCAAGCGAAGAAGAAAGCGCAGTGAAGGAG
CCGTTGGATCTCATAAGACTCAGCCTCGACGAGCGCATCTACGTTAAGCT
CCGATCCGACCGTGAACTCCGCGGCAAACTCCATGTATATATTTCAATTC
TCCTTTCTTTTTTTCCCCCGCTTTTGGGGAAAATTTTATATATACGACGG
ATGCTTATACGAATTCTTGAACATTGGCATGTGGGTTTCTGTTTATTTGA
TTGTAGGGTTCGTGTTATGAATTGGGTATTCAACAACTTAGGGTTTTAGT
TTAGTTTCTTATTGAAGGAAAAAAAGAAAAAGGCTTTAGCATAAAAGTTA
TTACTATTTTTTTTTCGAAACCTAAATGTAGTGTCGCTGGCTTTAATGGA
GGCAAACAAACACACAAGGATGTAAAAGGTTACTGTGGACAGAGACTGTT
TAATGTGGTTTTAGTGCTAACTTATGCTCCTTATAAGTTTAATGACATTG
TGAAAAAGAATGAAAAGTGATCTATTATCTTATTTATTTTCTTATGGAAA
TTAAAGGTTACTTGTGTTGTCAGGATGTTGCTTGGACATTGTGTTTAGGG
TTTGTGAAGTGATGAGTAATGAAAGACTGTGTTTAATGGAAGTTATAGTT
TGGAGCGATTTCTTCTAAGACTGATTTTATTGCTGAGGGCACAGTTATTT
GAGTTTATTTCTTCACAGATATGTTGGTGTCAATACGAACATAAATAGAA
GAAACTTGTTTGAAATATTGTCTTGAGCATAAATTTTTGGAGCAAATCAT
GTACTCAGTAATGTAGCCGCTGCAATTCAGTAATTACGCATTAGTTACTT
ATCTCTTAATGGTTACTAGAGTTCTGATCATTTCTGTTGGTGGCGACCTG
GCTTTGCAGGCATATGATCAACATTTAAACATGATTCTTGGGGACGTCGA
AGAAGTTGTTACTACAGTGGAAATCGATGATGAAACTTATGAAGAGATTG
TTCGGGTATGTTGTAATCTTAAAATTCTGTTATTGAATTTTAAGTTATAG
TAGTATCTGCTGCAGAGAAGCTATGGTGTTAAGCTAGAGATTGTGTCAGT
ATTTTTTAATACTTGTTGCGTCAGCGATTGCTGGAAGCTTATGAAGGTCA
GGGCTTTTCAGCATTGTCTGGGTAAACAGATATTATTTGCTGAACCTTTT
CATATGTAAATTTTGTAATCCAAGTACTTCAAAAATTTGTAAGAGAAGGT
AAAATAGATGTTTTTCTGTGTTTTATATGTCATGAGAAATATATCTTGGT
TTGCCAAAGCGAAAAATTGTGTAAATATGGTTAGAAAAAGAGAGAAGAGT
TTCATTTGTTTACTTTCTGGGTGGTAAACTTACTGAACTTATTCGTTTTA
TTTCAGACTACAAGGCGTACTGTTCCGTTTCTCTTTGTAAGAGGGGATGG
TGTCATCCTAGTTTCTCCTCCACTGAGGACAGCTTAAATCGAAGAACAGG
GTGCACACTCGATGAAGAAACCACCAATTTTACATTAATGCTTTTCTTTC
TGTCACTGTTTTTGCATTTCCTAGTTTAACATCTCAAACTGATTACATGC
TAAGTTGGCAATCATGAAATATCACATGTTGTTACGGCGGGCCTTGAATT
TGTATTACGTTAGAATCTTGTCAATTAGAAACTTACGGATCAGCTTTTGT
TGTATGAACATAGCTTTCCTCACTTGACTGTATGTTCAATTTGTGTACCC
ATCGCGCACCAAACGCACACTTTACATGATGTAGAACGGTAGATGGATTG
ACAGATTGTCCCATAGCCATTAAACAAAACTGCCATCTGGATCAGATCAG
AAACCATGCAAAGGTGCAATATCTGACTTCTGAATTTAACGCATTATAGC
TCGAGGAGTTGAAGGCTTCAACTTGAAGCAACTGTTTCTCTTTAAATTTT
ATTTTATTTTTAGCACTAGTTTTTGTGGTCAGAATGTGAAATGTTCTTGT
CAAGAGATGAGAGGCATTGTCATGAGATGATTGAAATGCAAGAATGTACC
AAGCGTAG

Coding sequence (CDS) from alignment at chr3:38265206..38267363-

>CMJ_chr3_022070.3_cmj_v1 ID=CMJ_chr3_022070.3_cmj_v1; Name=CMJ_chr3_022070.3; organism=Citrus maxima; type=CDS; length=258bp; location=Sequence derived from: chr3:38265206..38267363- (Citrus maxima
ATGGCAAGCGAAGAAGAAAGCGCAGTGAAGGAGCCGTTGGATCTCATAAG
ACTCAGCCTCGACGAGCGCATCTACGTTAAGCTCCGATCCGACCGTGAAC
TCCGCGGCAAACTCCATGCATATGATCAACATTTAAACATGATTCTTGGG
GACGTCGAAGAAGTTGTTACTACAGTGGAAATCGATGATGAAACTTATGA
AGAGATTGTTCGGGTATGTTGTAATCTTAAAATTCTGTTATTGAATTTTA
AGTTATAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	Sm_dom_euk/arc
IPR040002	Sm-like_LSM3
IPR047575	Sm
IPR034105	Lsm3
IPR010920	LSM_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome