CMJ_chr3_022500.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_022500.1 vs. ExPASy TrEMBL
Match: V4T8F4|V4T8F4_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003573mg PE=4 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 6.467e-55 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 Query: 1 MEKSKSFPEYSSSFSGEFDFDNQSNSYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYGNM 88
MEKSKSFPEYSSSFSGEFDFDNQSNSYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYGNM
Sbjct: 1 MEKSKSFPEYSSSFSGEFDFDNQSNSYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYGNM 88
BLAST of CMJ_chr3_022500.1 vs. ExPASy TrEMBL
Match: A0A067H7W9|A0A067H7W9_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034641mg PE=4 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 1.048e-54 Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 Query: 1 MEKSKSFPEYSSSFSGEFDFDNQSNSYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYGNM 88
MEKSKSFPEYSSSFSGEFDFDNQSN+YIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYGNM
Sbjct: 1 MEKSKSFPEYSSSFSGEFDFDNQSNAYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYGNM 88
BLAST of CMJ_chr3_022500.1 vs. ExPASy TrEMBL
Match: A0A6P6B646|A0A6P6B646_DURZI (uncharacterized protein LOC111315015 OS=Durio zibethinus OX=66656 GN=LOC111315015 PE=4 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 2.664e-44 Identity = 74/85 (87.06%), Postives = 79/85 (92.94%), Query Frame = 0 Query: 1 MEKSKSFPEYSSSFSGEFDFDNQSNSYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRY 85
MEKSKSFPEYSSSFSGEFDF+N+SNSY FNGP SK NGFA S+DPE+KRKKRIASYNVFT+E KLKSSVRNSFKWIK KFSDVRY
Sbjct: 1 MEKSKSFPEYSSSFSGEFDFENRSNSYNFNGPCSKSNGFAASNDPELKRKKRIASYNVFTMEGKLKSSVRNSFKWIKSKFSDVRY 85
BLAST of CMJ_chr3_022500.1 vs. ExPASy TrEMBL
Match: B9H7V5|B9H7V5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G195800 PE=4 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 3.583e-44 Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 0 Query: 1 MEKSKSFPEYSSSFSGEFDFDNQSNSYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYG 86
MEKSKSFP+YSSSFSGEF F+++SNSY FNGP KGNGFATSSDPE+KRKKRIASYNVFT+E KLKS+VRNSFKWIK KFSDVRYG
Sbjct: 1 MEKSKSFPQYSSSFSGEFGFEDRSNSYNFNGPCQKGNGFATSSDPELKRKKRIASYNVFTMEGKLKSNVRNSFKWIKSKFSDVRYG 86
BLAST of CMJ_chr3_022500.1 vs. ExPASy TrEMBL
Match: A0A4U5R4E8|A0A4U5R4E8_POPAL (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000004010 PE=4 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 4.666e-44 Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 0 Query: 1 MEKSKSFPEYSSSFSGEFDFDNQSNSYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYG 86
MEKSKSFP+YSS FSGEF F++QSNSY FNGPS KGNGFATSSDPE+KRKKRIASYNVFTVE KLKSS RNSFKWIK KFSD RYG
Sbjct: 64 MEKSKSFPQYSSFFSGEFGFEDQSNSYNFNGPSQKGNGFATSSDPELKRKKRIASYNVFTVEGKLKSSARNSFKWIKSKFSDARYG 149
BLAST of CMJ_chr3_022500.1 vs. ExPASy TrEMBL
Match: A0A061FIS9|A0A061FIS9_THECC (Mediator of RNA polymerase II transcription subunit 8 OS=Theobroma cacao OX=3641 GN=TCM_047078 PE=4 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 7.476e-44 Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 0 Query: 1 MEKSKSFPEYSSSFSGEFDFDNQSNSYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYG 86
MEKSKSFPEYSSSFSGEFDF+N+SNSY FNGP SK NGFA S+DPE+KRKKRIASYNVFT+E K+KSSVR+SFKWIK KFSDVRYG
Sbjct: 1 MEKSKSFPEYSSSFSGEFDFENRSNSYNFNGPCSKSNGFAASNDPELKRKKRIASYNVFTMEGKVKSSVRSSFKWIKSKFSDVRYG 86
BLAST of CMJ_chr3_022500.1 vs. ExPASy TrEMBL
Match: A9P994|A9P994_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G065200 PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 8.253e-44 Identity = 73/86 (84.88%), Postives = 77/86 (89.53%), Query Frame = 0 Query: 1 MEKSKSFPEYSSSFSGEFDFDNQSNSYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYG 86
MEKSKSFP+YSS FSGEF F++QSNSY FNGP KGNGFATSSDPE+KRKKRIASYNVFTVE KLKSS RNSFKWIK KFSD RYG
Sbjct: 1 MEKSKSFPQYSSFFSGEFGFEDQSNSYNFNGPCQKGNGFATSSDPELKRKKRIASYNVFTVEGKLKSSARNSFKWIKSKFSDARYG 86
BLAST of CMJ_chr3_022500.1 vs. ExPASy TrEMBL
Match: A0A6N2KPE9|A0A6N2KPE9_SALVM (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS108410 PE=4 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.135e-43 Identity = 72/86 (83.72%), Postives = 79/86 (91.86%), Query Frame = 0 Query: 1 MEKSKSFPEYSSSFSGEFDFDNQSNSYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYG 86
MEKSKSFP+YSSSFSGEF F++QS+SY FNGP KGNGF+TSSDPE+KRKKRIASYNVFT+E KLKSS RNSFKWIK KFSDVRYG
Sbjct: 1 MEKSKSFPQYSSSFSGEFGFEDQSSSYNFNGPCQKGNGFSTSSDPELKRKKRIASYNVFTMEGKLKSSARNSFKWIKSKFSDVRYG 86
BLAST of CMJ_chr3_022500.1 vs. ExPASy TrEMBL
Match: A0A6J1ABS7|A0A6J1ABS7_9ROSI (uncharacterized protein LOC110416445 OS=Herrania umbratica OX=108875 GN=LOC110416445 PE=4 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.493e-43 Identity = 73/86 (84.88%), Postives = 79/86 (91.86%), Query Frame = 0 Query: 1 MEKSKSFPEYSSSFSGEFDFDNQSNSYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYG 86
MEKSKSFPEYSSSFSGEFDF+N+SNSY FNGP SK NGFA S+DPE+KRKKRIASYNVFT+E KLKSSVR+S KWIK KFSDVRYG
Sbjct: 1 MEKSKSFPEYSSSFSGEFDFENRSNSYNFNGPCSKSNGFAASNDPELKRKKRIASYNVFTMEGKLKSSVRSSVKWIKSKFSDVRYG 86
BLAST of CMJ_chr3_022500.1 vs. ExPASy TrEMBL
Match: A0A6N2NHM0|A0A6N2NHM0_SALVM (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS514855 PE=4 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.175e-42 Identity = 71/86 (82.56%), Postives = 78/86 (90.70%), Query Frame = 0 Query: 1 MEKSKSFPEYSSSFSGEFDFDNQSNSYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYG 86
MEKSKSFP+YSSSFSGEF F+++ NSY FNGP KGNGFATSSDPE+KR+KRIASYNVFTVE KLKS+VRNSFKWIK KFSD RYG
Sbjct: 1 MEKSKSFPQYSSSFSGEFGFEDRPNSYNFNGPRQKGNGFATSSDPELKRRKRIASYNVFTVEGKLKSNVRNSFKWIKSKFSDARYG 86
BLAST of CMJ_chr3_022500.1 vs. Araport11
Match: AT4G09890.1 (| mediator of RNA polymerase II transcription subunit%2C putative (DUF3511) | Chr4:6218501-6218764 FORWARD LENGTH=87 | 201606) HSP 1 Score: 90.5077 bits (223), Expect = 2.128e-25 Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 0 Query: 1 MEKSKSFPEYSSSFS-GEFDFD-NQSNSYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFS 81
M+ SKS+ EYSSSFS EF +D N+SNSY FNGP ++DPE+KRKKR+ASYN+F E KLKS+++NSFKWIK KFS
Sbjct: 2 MKGSKSYTEYSSSFSTDEFGYDQNRSNSYNFNGP-------CINTDPEMKRKKRVASYNLFATEEKLKSTLKNSFKWIKNKFS 77
BLAST of CMJ_chr3_022500.1 vs. Araport11
Match: AT5G11970.1 (| ABC family ABC transporter%2C putative (DUF3511) | Chr5:3863289-3863606 REVERSE LENGTH=105 | 201606) HSP 1 Score: 59.6918 bits (143), Expect = 4.407e-13 Identity = 24/44 (54.55%), Postives = 36/44 (81.82%), Query Frame = 0 Query: 43 SDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYG 86
+DPE++RKKR+ASY ++ VE K+K S RNSF+W+K +++ V YG
Sbjct: 60 TDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYG 103
BLAST of CMJ_chr3_022500.1 vs. Araport11
Match: AT2G47480.1 (| DUF3511 domain protein%2C putative (DUF3511) | Chr2:19484207-19484539 REVERSE LENGTH=110 | 201606) HSP 1 Score: 55.4546 bits (132), Expect = 2.274e-11 Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 0 Query: 43 SDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDV 83
SD E+KRKKRIA Y +TVE K+KS+++N F+WIK K +
Sbjct: 66 SDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQI 106
BLAST of CMJ_chr3_022500.1 vs. Araport11
Match: AT1G72720.1 (| hypothetical protein (DUF3511) | Chr1:27376903-27377286 REVERSE LENGTH=127 | 201606) HSP 1 Score: 54.6842 bits (130), Expect = 6.453e-11 Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 0 Query: 35 KGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYG 86
K GF + EI+RKKR+ASYNV+ VE ++K S++ SFKW K S+ YG
Sbjct: 74 KKKGFKGLCEAEIQRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSNAVYG 125
BLAST of CMJ_chr3_022500.1 vs. Araport11
Match: AT2G19460.1 (| DUF3511 domain protein (DUF3511) | Chr2:8431581-8431931 FORWARD LENGTH=116 | 201606) HSP 1 Score: 53.1434 bits (126), Expect = 1.980e-10 Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 0 Query: 44 DPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGK 79
DP+++RKKR+ SY +TVE KLK S R SFKWIK K
Sbjct: 75 DPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDK 110
BLAST of CMJ_chr3_022500.1 vs. Araport11
Match: AT2G19460.2 (| DUF3511 domain protein (DUF3511) | Chr2:8431425-8431931 FORWARD LENGTH=168 | 201606) HSP 1 Score: 53.1434 bits (126), Expect = 6.118e-10 Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 0 Query: 44 DPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGK 79
DP+++RKKR+ SY +TVE KLK S R SFKWIK K
Sbjct: 127 DPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDK 162
BLAST of CMJ_chr3_022500.1 vs. Araport11
Match: AT3G05725.1 (| hypothetical protein (DUF3511) | Chr3:1692548-1693153 FORWARD LENGTH=124 | 201606) HSP 1 Score: 51.9878 bits (123), Expect = 7.891e-10 Identity = 21/43 (48.84%), Postives = 33/43 (76.74%), Query Frame = 0 Query: 44 DPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYG 86
DPEIKRK+R+A Y +++ E K+K ++R S+KWIK + S + +G
Sbjct: 81 DPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123
BLAST of CMJ_chr3_022500.1 vs. Araport11
Match: AT3G62640.1 (| DUF3511 domain protein (DUF3511) | Chr3:23166511-23166843 REVERSE LENGTH=110 | 201606) HSP 1 Score: 51.2174 bits (121), Expect = 9.788e-10 Identity = 21/43 (48.84%), Postives = 31/43 (72.09%), Query Frame = 0 Query: 44 DPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYG 86
D E KRKKRIA+Y + +E K+KS+V+ F WIK ++S + +G
Sbjct: 68 DAETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_022500.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_022500.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_022500.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 8 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_022500.1_cmj_v1 ID=CMJ_chr3_022500.1_cmj_v1; Name=CMJ_chr3_022500.1; organism=Citrus maxima; type=mRNA; length=267bpback to top protein sequence of CMJ_chr3_022500.1_cmj_v1 >CMJ_chr3_022500.1_cmj_v1 ID=CMJ_chr3_022500.1_cmj_v1; Name=CMJ_chr3_022500.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=89bpback to top mRNA from alignment at chr3:38596053..38596319+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=267bp; location=Sequence derived from: chr3:38596053..38596319+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:38596053..38596319+ >CMJ_chr3_022500.1_cmj_v1 ID=CMJ_chr3_022500.1_cmj_v1; Name=CMJ_chr3_022500.1; organism=Citrus maxima; type=CDS; length=267bp; location=Sequence derived from: chr3:38596053..38596319+ (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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