CMJ_chr3_023490.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_023490.1 vs. ExPASy TrEMBL
Match: A0A2H5MZ21|A0A2H5MZ21_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_281750 PE=4 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 2.171e-67 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 Query: 1 MSTAKSSFSLATTSTRSLCFALCVITLLMVSAQFDMGDCRALRSTTTTTTVEDRAVTGCNGADQSEAPPTNSVPVSSNNATNNSSSRDLAFTLASGPSRRGPGH 104
MSTAKSSFSLATTSTRSLCFALCVITLLMVSAQFDMGDCRALRSTTTTTTVEDRAVTGCNGADQSEAPPTNSVPVSSNNATNNSSSRDLAFTLASGPSRRGPGH
Sbjct: 1 MSTAKSSFSLATTSTRSLCFALCVITLLMVSAQFDMGDCRALRSTTTTTTVEDRAVTGCNGADQSEAPPTNSVPVSSNNATNNSSSRDLAFTLASGPSRRGPGH 104
BLAST of CMJ_chr3_023490.1 vs. ExPASy TrEMBL
Match: V4SJM7|V4SJM7_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002926mg PE=4 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 4.494e-66 Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 0 Query: 1 MSTAKSSFSLATTSTRSLCFALCVITLLMVSAQFDMGDCRALRSTTTTTTVEDRAVTGCNGADQSEAPPTNSVPVSSNNATNNSSSRDLAFTLASGPSRRGPGH 104
MSTAKSSFSLATTSTRSLCFALCVITLLMVSAQFDMGDCRALRSTTTTTTVEDRAVTGCNGADQSEAPPTNSVPVSSN+A+NNSSSRDLAFTLASGPSRRGPGH
Sbjct: 1 MSTAKSSFSLATTSTRSLCFALCVITLLMVSAQFDMGDCRALRSTTTTTTVEDRAVTGCNGADQSEAPPTNSVPVSSNSASNNSSSRDLAFTLASGPSRRGPGH 104
BLAST of CMJ_chr3_023490.1 vs. ExPASy TrEMBL
Match: A0A067H8G3|A0A067H8G3_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034145mg PE=4 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 5.438e-65 Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0 Query: 1 MSTAKSSFSLATTSTRSLCFALCVITLLMVSAQFDMGDCRALRSTTTTTTVEDRAVTGCNGADQSEAPPTNSVPVSSNNATNNSSSRDLAFTLASGPSRRGPGH 104
MSTAKSSFSLATTSTRSLCFALCVITLLMVSAQFDMGDCRALRSTTTTT VEDRAVTGCNGADQSEAPPTNSVPVSSNNATNNSSSRDLAFTLASGPSRRGPGH
Sbjct: 1 MSTAKSSFSLATTSTRSLCFALCVITLLMVSAQFDMGDCRALRSTTTTT-VEDRAVTGCNGADQSEAPPTNSVPVSSNNATNNSSSRDLAFTLASGPSRRGPGH 103
BLAST of CMJ_chr3_023490.1 vs. ExPASy TrEMBL
Match: A0A2N9J0Q8|A0A2N9J0Q8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58260 PE=4 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.551e-16 Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 0 Query: 16 RSLCFALCVITLLMVSAQFDMGDCRALRSTTTTTTVEDRAVTGCNGADQSEAPPTNSVPVSSNNA-TNNSSSRDLAFTLASGPSRRGPGH 104
+SL F L +I +L++SAQF +G+CRALRS + C D +E+ S VSS N+ TN+SS+R LAF LASGPS++GPGH
Sbjct: 5 KSLLFVLGMI-ILVISAQFRVGECRALRS-----------MGACEQVDGAESAGMASFVVSSKNSSTNHSSARSLAFRLASGPSKKGPGH 82
BLAST of CMJ_chr3_023490.1 vs. ExPASy TrEMBL
Match: A0A6P6FLD4|A0A6P6FLD4_ZIZJJ (uncharacterized protein LOC112489123 OS=Ziziphus jujuba OX=326968 GN=LOC112489123 PE=4 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.111e-14 Identity = 44/94 (46.81%), Postives = 57/94 (60.64%), Query Frame = 0 Query: 12 TTSTRSLCFALCVITLLMVSAQFDMGDCRALRSTTTTTTVEDRAVTGCNGADQSEAPPTNSVPVSSNNATNNSS-SRDLAFTLASGPSRRGPGH 104
TTS ++L L ++ LL+V+AQF DCRALRSTT + GC E S VSSNN++++ +R LAF LASGPS+RGPGH
Sbjct: 9 TTSMKALWIVLGLM-LLIVTAQFGQADCRALRSTTMNS-----GNAGCQQVGDGEVVGMASFAVSSNNSSSDRPLARSLAFRLASGPSKRGPGH 96
BLAST of CMJ_chr3_023490.1 vs. ExPASy TrEMBL
Match: A0A314XIB0|A0A314XIB0_PRUYE (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_27117 PE=4 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 3.193e-13 Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 0 Query: 11 ATTSTRSLCFALCVITLLMVSAQFDMGDCRALRSTTTTTTVEDRAVTGCNGADQSEAPPTNSVPVSSNNATNNS---SSRDLAFTLASGPSRRGPGH 104
+T ST + + ++ LL+VS +F DCRALRS T+ + + GC G D +E S VSSN ++ + S R LAF LASGPS++GPGH
Sbjct: 9 STASTSCVWLVMGLMVLLIVSTEFGQVDCRALRSATSDSGSDG----GCKGVDGAEEVGMASFAVSSNYNSSTARRPSVRSLAFRLASGPSKKGPGH 101
BLAST of CMJ_chr3_023490.1 vs. ExPASy TrEMBL
Match: M5Y9P5|M5Y9P5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G429100 PE=4 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 5.497e-13 Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 0 Query: 11 ATTSTRSLCFALCVITLLMVSAQFDMGDCRALRSTTTTTTVEDRAVTGCNGADQSEAPPTNSVPVSSNNATNNS---SSRDLAFTLASGPSRRGPGH 104
+T ST + + ++ LL+VS +F DCRALRS T+ + + GC G D +E + VSSN ++ + S R LAF+LASGPS++GPGH
Sbjct: 9 STASTSCVWLVMGLMVLLIVSTEFGQVDCRALRSATSDSGSDG----GCKGIDGAEEVGMATFAVSSNYNSSTARRPSVRSLAFSLASGPSKKGPGH 101
BLAST of CMJ_chr3_023490.1 vs. ExPASy TrEMBL
Match: A0A5E4EAT0|A0A5E4EAT0_PRUDU (PREDICTED: LOC100500455 OS=Prunus dulcis OX=3755 GN=ALMOND_2B008775 PE=4 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 9.462e-13 Identity = 40/97 (41.24%), Postives = 57/97 (58.76%), Query Frame = 0 Query: 11 ATTSTRSLCFALCVITLLMVSAQFDMGDCRALRSTTTTTTVEDRAVTGCNGADQSEAPPTNSVPVSSNNATNNS---SSRDLAFTLASGPSRRGPGH 104
+T ST + + ++ LL+VS +F DCRALRS T+ + + GC G D +E + VSSN ++ + S R LAF LASGPS++GPGH
Sbjct: 9 STASTSCVWLVMGLMVLLIVSTEFGQVDCRALRSATSDSGSDG----GCKGVDGAEEVGMATFAVSSNYNSSTARRPSVRSLAFRLASGPSKKGPGH 101
BLAST of CMJ_chr3_023490.1 vs. ExPASy TrEMBL
Match: A0A6P5STW2|A0A6P5STW2_PRUAV (uncharacterized protein LOC110762003 OS=Prunus avium OX=42229 GN=LOC110762003 PE=4 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.021e-12 Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 0 Query: 11 ATTSTRSLCFALCVITLLMVSAQFDMGDCRALRSTTTTTTVEDRAVTGCNGADQSEAPPTNSVPVSSNNATNNS---SSRDLAFTLASGPSRRGPGH 104
+T ST + + ++ LL+VS +F DCRALRS T+ + + GC G D +E S VSSN ++ + S R LAF LASGPS++GPGH
Sbjct: 9 STASTCCVWLVMGLMVLLIVSTEFGQVDCRALRSATSDSGSDG----GCKGVDGAEEVGMASFAVSSNYNSSTARRPSVRSLAFRLASGPSKKGPGH 101
BLAST of CMJ_chr3_023490.1 vs. ExPASy TrEMBL
Match: A0A6J5WAT6|A0A6J5WAT6_PRUAR (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS8538 PE=4 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.597e-12 Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 0 Query: 11 ATTSTRSLCFALCVITLLMVSAQFDMGDCRALRSTTTTTTVEDRAVTGCNGADQSEAPPTNSVPVSSNNATNNS---SSRDLAFTLASGPSRRGPGH 104
+T ST + + ++ LL+VS +F DCRALRS T+ + + GC G D +E S VSSN ++ + S R LA LASGPS++GPGH
Sbjct: 9 STASTSCVWLVMGLMVLLIVSTEFGQVDCRALRSATSDSGSDG----GCKGVDGAEEVGMASFAVSSNYNSSTARRPSVRSLALRLASGPSKKGPGH 101 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_023490.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_023490.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_023490.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_023490.1_cmj_v1 ID=CMJ_chr3_023490.1_cmj_v1; Name=CMJ_chr3_023490.1; organism=Citrus maxima; type=mRNA; length=315bpback to top protein sequence of CMJ_chr3_023490.1_cmj_v1 >CMJ_chr3_023490.1_cmj_v1 ID=CMJ_chr3_023490.1_cmj_v1; Name=CMJ_chr3_023490.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=105bpback to top mRNA from alignment at chr3:39247026..39247713- Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=688bp; location=Sequence derived from: chr3:39247026..39247713- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:39247026..39247713- >CMJ_chr3_023490.1_cmj_v1 ID=CMJ_chr3_023490.1_cmj_v1; Name=CMJ_chr3_023490.1; organism=Citrus maxima; type=CDS; length=315bp; location=Sequence derived from: chr3:39247026..39247713- (Citrus maximaback to top |