CMJ_chr3_023540.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr3_023540.1
Unique Name	CMJ_chr3_023540.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	267

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cmjcmjL010	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
cmjcmjR101	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
ccrcmjL223	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL330	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL565	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL663	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL679	Citrus australasica CRC3672 genome v1	Citrus australasica
cmhcmjL052	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmhcmjL144	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmhcmjL419	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmjcraR235	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR242	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR257	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR272	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR281	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
ciucmjL024	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL070	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL164	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL448	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL540	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL767	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgacmjL026	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL071	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL167	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL407	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL550	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL801	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cmjcrcR151	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcrcR169	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcrcR183	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcrmR222	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR232	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR246	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR260	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR266	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcriR228	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR241	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR258	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR259	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR293	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Orthologs


Gene/Transcript	Assembly	Species
CP3g000575.t1	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
g7213.t1	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
g7659.t1_h2	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
g7309.t1_h1	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
hap2-g7156.t1	Citrus inodora genome v1.0 (UQ)	Citrus inodora
hap1-g6572.t1	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
g8311.t1	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
Cau_v1.primary_g16226.t1	Citrus australasica CRC3672 genome v1	Citrus australasica
hap2-g6746.t1	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
hap1-g7451.t1	Citrus inodora genome v1.0 (UQ)	Citrus inodora

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Cmt128880.1	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr3_023540	CMJ_chr3_023540_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_023540.1.exon1	CMJ_chr3_023540.1.exon1_cmj_v1	Citrus maxima	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_023540.1.cds.1	CMJ_chr3_023540.1.cds.1_cmj_v1	Citrus maxima	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_023540.1_cmj_v1	CMJ_chr3_023540.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr3_023540.1_cmj_v1	CMJ_chr3_023540.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

The following BLAST results are available for this feature:

BLAST of CMJ_chr3_023540.1 vs.
BLAST of CMJ_chr3_023540.1 vs.
BLAST of CMJ_chr3_023540.1 vs.

BLAST of CMJ_chr3_023540.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_023540.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_023540.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:39286061..39286327-
coding sequence from alignment at chr3:39286061..39286327-

mRNA sequence

>CMJ_chr3_023540.1_cmj_v1 ID=CMJ_chr3_023540.1_cmj_v1; Name=CMJ_chr3_023540.1; organism=Citrus maxima; type=mRNA; length=267bp
ATGTCAATGCCATTATTGAATGTAATGGAGCATGGAGCATTGGAGCCTCA
ACATATGCTGTCCAAGAGTAACAGAGGGTCTCTTTCATTTTCCTTTAATC
TTGAAGCTGCAACTAAATACTGCTTCTACTTCTTGATAAAACTGTGGCGT
GAGTTATGGGCATGGCTGCAGCAGCGTCCTCGTCGGTTGGTCTGGCAGTG
GCTGGTTTGGAAGGATTTTGTGGTGAACTGGGGATTTGCTGATTTGCCTT
GTTTTTCAATTTGTTAA

protein sequence of CMJ_chr3_023540.1_cmj_v1

>CMJ_chr3_023540.1_cmj_v1 ID=CMJ_chr3_023540.1_cmj_v1; Name=CMJ_chr3_023540.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=89bp
MSMPLLNVMEHGALEPQHMLSKSNRGSLSFSFNLEAATKYCFYFLIKLWR
ELWAWLQQRPRRLVWQWLVWKDFVVNWGFADLPCFSIC*

mRNA from alignment at chr3:39286061..39286327-

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=267bp; location=Sequence derived from: chr3:39286061..39286327- (Citrus maxima
ATGTCAATGCCATTATTGAATGTAATGGAGCATGGAGCATTGGAGCCTCA
ACATATGCTGTCCAAGAGTAACAGAGGGTCTCTTTCATTTTCCTTTAATC
TTGAAGCTGCAACTAAATACTGCTTCTACTTCTTGATAAAACTGTGGCGT
GAGTTATGGGCATGGCTGCAGCAGCGTCCTCGTCGGTTGGTCTGGCAGTG
GCTGGTTTGGAAGGATTTTGTGGTGAACTGGGGATTTGCTGATTTGCCTT
GTTTTTCAATTTGTTAA

Coding sequence (CDS) from alignment at chr3:39286061..39286327-

>CMJ_chr3_023540.1_cmj_v1 ID=CMJ_chr3_023540.1_cmj_v1; Name=CMJ_chr3_023540.1; organism=Citrus maxima; type=CDS; length=267bp; location=Sequence derived from: chr3:39286061..39286327- (Citrus maxima
ATGTCAATGCCATTATTGAATGTAATGGAGCATGGAGCATTGGAGCCTCA
ACATATGCTGTCCAAGAGTAACAGAGGGTCTCTTTCATTTTCCTTTAATC
TTGAAGCTGCAACTAAATACTGCTTCTACTTCTTGATAAAACTGTGGCGT
GAGTTATGGGCATGGCTGCAGCAGCGTCCTCGTCGGTTGGTCTGGCAGTG
GCTGGTTTGGAAGGATTTTGTGGTGAACTGGGGATTTGCTGATTTGCCTT
GTTTTTCAATTTGTTAA