CMJ_chr3_024120.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_024120.1 vs. ExPASy TrEMBL
Match: A0A2H5NHG1|A0A2H5NHG1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_044840 PE=4 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 2.311e-59 Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 Query: 1 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTVK 89 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTVK Sbjct: 1 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTVK 89
BLAST of CMJ_chr3_024120.1 vs. ExPASy TrEMBL
Match: A0A067GX94|A0A067GX94_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036018mg PE=4 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 3.333e-58 Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = 0 Query: 1 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTVK 89 MPFYVPRNG+I+LSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTVK Sbjct: 1 MPFYVPRNGSIALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTVK 89
BLAST of CMJ_chr3_024120.1 vs. ExPASy TrEMBL
Match: V4V7E9|V4V7E9_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003536mg PE=4 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 6.386e-45 Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 Query: 18 MKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTVK 89 MKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTVK Sbjct: 1 MKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTVK 72
BLAST of CMJ_chr3_024120.1 vs. ExPASy TrEMBL
Match: A0A7N2QY84|A0A7N2QY84_QUELO (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.852e-34 Identity = 55/88 (62.50%), Postives = 71/88 (80.68%), Query Frame = 0 Query: 1 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTV 88 MP + PR+ + LSE+ +K LLKRYD +GDG+LSK EL+AAFR+ GLHFSG+RA +AL HAD+N DG++ DEMKELV YA +WGFT+ Sbjct: 1 MPVWSPRSTSYPLSEEQLKGLLKRYDTNGDGKLSKNELKAAFRSLGLHFSGWRAGQALRHADANGDGYVSEDEMKELVKYAMKWGFTI 88
BLAST of CMJ_chr3_024120.1 vs. ExPASy TrEMBL
Match: A0A2R6RN05|A0A2R6RN05_ACTCC (Calcium-binding protein CML10 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc04715 PE=4 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.179e-33 Identity = 54/88 (61.36%), Postives = 71/88 (80.68%), Query Frame = 0 Query: 1 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTV 88 MP + PR+ N+ LSE+ +K LLKRYD +GDGRLS++EL+AAFR+ GL +SG+RA RA+ HAD+N DGFI +EM ELV YA RWGF++ Sbjct: 1 MPIWNPRSVNLPLSEEQLKGLLKRYDTNGDGRLSRQELKAAFRSLGLRWSGWRAARAMRHADANGDGFISQEEMDELVKYATRWGFSI 88
BLAST of CMJ_chr3_024120.1 vs. ExPASy TrEMBL
Match: A0A7J7HRZ1|A0A7J7HRZ1_CAMSI (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_008488 PE=4 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 2.405e-33 Identity = 55/88 (62.50%), Postives = 72/88 (81.82%), Query Frame = 0 Query: 1 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTV 88 MP + PR+ N+ L+ED +K LLKRYDK+GDG+LSKKEL+ AFR+ GL FSG+RA RAL HAD+N DG+I ++E+ ELV YA RWGF++ Sbjct: 1 MPIWTPRSVNVPLNEDQIKGLLKRYDKNGDGKLSKKELKDAFRDLGLKFSGWRAGRALRHADANGDGYISDEELNELVKYARRWGFSL 88
BLAST of CMJ_chr3_024120.1 vs. ExPASy TrEMBL
Match: A0A2N9FZV9|A0A2N9FZV9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20246 PE=4 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 2.743e-33 Identity = 54/88 (61.36%), Postives = 69/88 (78.41%), Query Frame = 0 Query: 1 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTV 88 MP + PR+ LSE+ +K LLKRYD +GDGRLSK EL+AAFR+ GLHFSG+RA +AL H+D+N DG+I DEMKEL+ Y +WGFT+ Sbjct: 1 MPVWSPRSTGYPLSEEQLKGLLKRYDTNGDGRLSKNELKAAFRSLGLHFSGWRAGQALRHSDTNGDGYISEDEMKELLKYCMKWGFTI 88
BLAST of CMJ_chr3_024120.1 vs. ExPASy TrEMBL
Match: A0A7J0DED7|A0A7J0DED7_9ERIC (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0027180 PE=4 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 8.036e-32 Identity = 52/88 (59.09%), Postives = 68/88 (77.27%), Query Frame = 0 Query: 1 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTV 88 MP + PR N+ LSE+ +K LLKRYD +GDGRLS+KEL+ AFR+ GL +SG+RA +A+ HAD+N DGFI +EM ELV YA RWG ++ Sbjct: 1 MPIWNPRRVNLPLSEEQLKGLLKRYDTNGDGRLSRKELKVAFRSLGLRWSGWRAAQAIRHADANGDGFISKEEMDELVKYATRWGISI 88
BLAST of CMJ_chr3_024120.1 vs. ExPASy TrEMBL
Match: A0A2R6Q025|A0A2R6Q025_ACTCC (Calcium-binding protein CML10 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23733 PE=4 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.379e-31 Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = 0 Query: 1 MPFYVPRNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWGFTV 88 MP + PR N LSE+ +K LLKRYD +GDGRLS+KEL+ AFR+ GL +SG+RA +A+ HAD+N DGFI +EM ELV YA RWG ++ Sbjct: 1 MPIWNPRRVNWPLSEEQLKGLLKRYDTNGDGRLSRKELKVAFRSLGLRWSGWRAAQAIRHADANGDGFISKEEMDELVKYATRWGISI 88
BLAST of CMJ_chr3_024120.1 vs. ExPASy TrEMBL
Match: A0A6A4LS57|A0A6A4LS57_9ERIC (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_10951 PE=4 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 8.414e-30 Identity = 55/90 (61.11%), Postives = 71/90 (78.89%), Query Frame = 0 Query: 1 MPFYVP-RNGNISLSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA-RWGFTV 88 M + P ++ N+SL+E+ +K LLKRYDK+GDGRLS+KEL+ AFR+ GL+FS +RA RAL HAD N DG+I +EMKELV YA +WGFTV Sbjct: 1 MAIWNPIKSVNVSLTEEQLKGLLKRYDKNGDGRLSRKELREAFRSLGLNFSWWRAWRALRHADENGDGYISEEEMKELVKYATKKWGFTV 90 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_024120.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_024120.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_024120.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_024120.1_cmj_v1 ID=CMJ_chr3_024120.1_cmj_v1; Name=CMJ_chr3_024120.1; organism=Citrus maxima; type=mRNA; length=270bpback to top protein sequence of CMJ_chr3_024120.1_cmj_v1 >CMJ_chr3_024120.1_cmj_v1 ID=CMJ_chr3_024120.1_cmj_v1; Name=CMJ_chr3_024120.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=90bpback to top mRNA from alignment at chr3:39677207..39677476+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=270bp; location=Sequence derived from: chr3:39677207..39677476+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:39677207..39677476+ >CMJ_chr3_024120.1_cmj_v1 ID=CMJ_chr3_024120.1_cmj_v1; Name=CMJ_chr3_024120.1; organism=Citrus maxima; type=CDS; length=270bp; location=Sequence derived from: chr3:39677207..39677476+ (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|