CMJ_chr3_024540.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_024540.1 vs. ExPASy TrEMBL
Match: A0A067GXL4|A0A067GXL4_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0242471mg PE=4 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 1.516e-60 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 Query: 128 EAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTWVYDE 217
EAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTWVYDE
Sbjct: 1 EAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTWVYDE 90
BLAST of CMJ_chr3_024540.1 vs. ExPASy TrEMBL
Match: V4T9B4|V4T9B4_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002154mg PE=4 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 4.985e-59 Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0 Query: 127 GEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTWVYDE 217
GEAGMEKYENRFYLWH+YFANPYEWWDNRK K YPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTWVYDE
Sbjct: 180 GEAGMEKYENRFYLWHLYFANPYEWWDNRKKKFYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTWVYDE 270 HSP 2 Score: 172.94 bits (437), Expect = 8.228e-50 Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 0 Query: 1 MIARRIGQSLRTVCRFSLRRVAPFCSSSSDHPRFSSVYSDAKRGGSAVYRHALKFQRPTTIKWQPQLENSVNFIGTVVRPLERSNV 86
MIARRIGQSLRTVCRFSLRRVAPFC SSSDHPRFSSVYSDAKRGGSAVYRHALKFQRPTTIKWQ QLENSVNFIGTVVRPLERSNV
Sbjct: 1 MIARRIGQSLRTVCRFSLRRVAPFCLSSSDHPRFSSVYSDAKRGGSAVYRHALKFQRPTTIKWQAQLENSVNFIGTVVRPLERSNV 86
BLAST of CMJ_chr3_024540.1 vs. ExPASy TrEMBL
Match: A0A067H9P7|A0A067H9P7_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0242472mg PE=4 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 6.039e-54 Identity = 89/92 (96.74%), Postives = 89/92 (96.74%), Query Frame = 0 Query: 1 MIARRIGQSLRTVCRFSLRRVAPFCSSSSDHPRFSSVYSDAKRGGSAVYRHALKFQRPTTIKWQPQLENSVNFIGTVVRPLERSNV--NYTL 90
MIARRIGQSLRTVCRFSLRRVAPFCSSSSDHPRFSSVYSDAKRGGSAVYRHALKFQRPTTIKWQPQLENSVNFIGTVVRPLERSNV YTL
Sbjct: 1 MIARRIGQSLRTVCRFSLRRVAPFCSSSSDHPRFSSVYSDAKRGGSAVYRHALKFQRPTTIKWQPQLENSVNFIGTVVRPLERSNVFGVYTL 92
BLAST of CMJ_chr3_024540.1 vs. ExPASy TrEMBL
Match: A0A2I4EST9|A0A2I4EST9_JUGRE (protein OSB1, mitochondrial isoform X2 OS=Juglans regia OX=51240 GN=LOC108992366 PE=4 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 4.067e-53 Identity = 104/227 (45.81%), Postives = 133/227 (58.59%), Query Frame = 0 Query: 1 MIARRIGQSLRTVCRFSLRRVAPFCSSSSDHPRFSSVYSDAKRGGSAVYRHALKFQRPTTIKWQPQLENSVNFIGTVVRPL---ERSNVNYTLTQRWIRMESSACVTSYFEVFGPFLFSCFIYSLDTNL--GEAGMEKYENRFYLWHVYFANPYEWWDNRKNK----LYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRD-LGSLSRVSTWVYDE 217
M A R G +R R SL+ A +S P + +++ GGS VY HALKFQRPTTI QL NSV+FIG+V PL ER + + +++S F F L+ N+ G AG+E +ENR +LW V+F NPYEWWDNRK K + APDFKHK TGE LWL+P DPPW+K+QL+ +D+ M E+G D +GS SRVS WVYDE
Sbjct: 1 MSAHRFGGLIRNATRLSLQSSA----TSPRSPPPTKFFAEDVEGGSEVYGHALKFQRPTTITLTQQLVNSVSFIGSVESPLRIIERVKLGRFGVSTLLSVKASPDSNHKFRSFR-VLYKVSRGCKAQNILHGAAGLEVHENRLHLWQVFFTNPYEWWDNRKRKDLRKVNLSAPDFKHKDTGEVLWLNPNDPPWIKRQLELLDTKMAEKGQGDHVGSHSRVSMWVYDE 222
BLAST of CMJ_chr3_024540.1 vs. ExPASy TrEMBL
Match: A0A7J7CZB3|A0A7J7CZB3_TRIWF (Protein OSB1 mitochondrial-like isoform X1 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00633 PE=4 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 4.414e-51 Identity = 111/281 (39.50%), Postives = 145/281 (51.60%), Query Frame = 0 Query: 1 MIARRIGQSLRTVCRFSL-RRVAPFCSSSSDHPRFSSVYSDA---KRGGSAVYRHALKFQRPTTIKWQPQLENSVNFIG--------------------TVVRPLERSNVNYT---LTQRWIRMESSACV-----TSYFEVFG--------------PFLFSCFIYSLD-------------------TNLGEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTWVYD 216
+IA RIG + S RR F S+ +PR S +SD ++G SAVYRHALKFQRP TI+WQ QL NSVNFIG TV+R ++N T L Q W + + C+ V G +L+ + ++ + G++G+E+Y++R LW V+F +PYEWWDNRK K P PDFKHK TGEALWL P DPPW+K+QLQ IDS M E+G ++G+ SRVS WVYD
Sbjct: 2 IIACRIGGLSKNSSVISQQRRQVLFSWFSTANPRQSYFFSDGVEEEKGVSAVYRHALKFQRPNTIRWQQQLVNSVNFIGAVDRPVQKQSFKRDRPVGAYTVLRIKNSGDINRTFSILLQMWDDL-AKMCIDHLKPNDVIHVSGRLAGFLSNHPSGNRQYLYKVVVKEVNHVTQRAQGSTIQSSVESQSEDSGKSGLERYKDRLRLWQVFFTSPYEWWDNRKCKTNPQQPDFKHKDTGEALWLSPNDPPWIKRQLQLIDSEMAEKGKVEVGTSSRVSRWVYD 281
BLAST of CMJ_chr3_024540.1 vs. ExPASy TrEMBL
Match: A0A371H1K7|A0A371H1K7_MUCPR (Protein OSB1, mitochondrial (Fragment) OS=Mucuna pruriens OX=157652 GN=OSB1 PE=4 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 9.637e-50 Identity = 108/240 (45.00%), Postives = 130/240 (54.17%), Query Frame = 0 Query: 16 FSLRRVAPFCSSSSDHPRFSSVYSDAKRGGSAVYRHALKFQRPTTIKWQPQLENSVNFIGTVVRPLERSNVN------YTLTQ------------RWIRMESSACVTSY--------------FEVFGPFLFSCFIYS------LDTNLGEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTWVYDE 217
FS R PF +SS+ + F + D G SAVY HALKFQRP TI+W P+LEN+ NFIG+V R L R N YTL R + M ++ + SY EV F F + L++ EAGM +NR YLW VYFANP EWWD RK KL P PDFKHK TGE LWL DPPWVK+QLQ +DS + G+ +G SRV+TWVYDE
Sbjct: 16 FSPLRCFPFSTSSTSNRHF---FDDVVPGCSAVYLHALKFQRPATIRWSPRLENTANFIGSVTRELTRVNSKTGKFGVYTLLDVRRSNQPDSSFFRVLLMMWNSSLGSYTKPDATGKLRLNYKLEV-EEFKFVAQMSGYQGHEKLESVKAEAGMRSNQNRLYLWQVYFANPNEWWDQRKRKLNPKQPDFKHKDTGEVLWLSKYDPPWVKRQLQLLDSKIAGGGT--VGRHSRVTTWVYDE 249
BLAST of CMJ_chr3_024540.1 vs. ExPASy TrEMBL
Match: W9QJF5|W9QJF5_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_014448 PE=4 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 1.776e-49 Identity = 102/262 (38.93%), Postives = 134/262 (51.15%), Query Frame = 0 Query: 17 SLRRVAPFCS---SSSDHPRFSSVYSDAKRGGSAVYRHALKFQRPTTIKWQPQLENSVNFIGTVVRPLERSNV-------NYTLTQRWIRMESSACVTSYFEVFGPFLFSCFIYSLDTNL---------------------------------------------------GEAG-MEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTWVYD 216
S +R PF S +++ +PRF + + D G SAVY+HALKFQRPTTI+WQ +L NS +FIGTVVRP+E N YT+ + +S +V G CF + + +L G A +EK+ +R +LW V+F+NPYEWWDNRK KLYPG+PDFKHK TGEALWL P DPPW+KKQLQ +D +E +G + +S W YD
Sbjct: 61 SHQRFVPFSSYPATAATNPRFRNSFFDESEGSSAVYKHALKFQRPTTIRWQDRLFNSASFIGTVVRPVEALNAAENGNLCAYTVLSVSLPHQSRGGFRILLKVQGEMAEMCFKHLKENDLVYVSGRLFTSTKADENGSLRLLYKVLVKELNYVTQRRDPISQKYEEPESAEGRAARLEKWRDRLHLWQVFFSNPYEWWDNRKQKLYPGSPDFKHKDTGEALWLSPNDPPWIKKQLQLLD--LEMGLGEPVGCRACLSKWEYD 320
BLAST of CMJ_chr3_024540.1 vs. ExPASy TrEMBL
Match: A0A5D2ZAW0|A0A5D2ZAW0_GOSMU (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A05G213600v1 PE=4 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 3.967e-48 Identity = 108/278 (38.85%), Postives = 140/278 (50.36%), Query Frame = 0 Query: 1 MIARRIGQ-SLRTVCRFSLRRVAPFCSSSSDHPRFSSVYSDAKRGGSAVYRHALKFQRPTTIKWQPQLENSVNFIGTVVRPLERSNV---NYTLTQR-------------------WIRMESSACVTSY----FEVFGPFLFSCFIYSLDTNL---------------------------------GEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEE-RGSRDLGSLSRVSTWVYDE 217
MI RRIG LR + + L F SS++ + RFS+ + D GGSA+YR ALKFQRPTT++ +P N ++ IGTV PL+ N N+ + R W++M C+ F L S + +LD L GEA M Y+++ YLW V+F NP+EWWDNRK+K P PDFKHK TGEALWL+P DPPW+KKQLQ +DS + E G R+ S VS WVYDE
Sbjct: 1 MIVRRIGALILRRISQLPLPDRTLFHSSAASNRRFSNHFVDDDEGGSAIYRLALKFQRPTTVEVEPSSRNRISLIGTVDEPLKVMNTRSDNFGVQTRLNVKNPYDSDCRFKIRLKMWMKM-GKICMEHVKPGDFIYVSGVLGSFSVATLDKQLIIYYQVTVTELSFVTHHGERSTTRECKELESEQGEASMGSYDSQLYLWQVFFTNPFEWWDNRKSKKNPRQPDFKHKDTGEALWLNPNDPPWIKKQLQLLDSKLAEGLGDRESRRYS-VSEWVYDE 276
BLAST of CMJ_chr3_024540.1 vs. ExPASy TrEMBL
Match: A0A5D2ZC25|A0A5D2ZC25_GOSMU (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A05G213600v1 PE=4 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 9.629e-48 Identity = 108/280 (38.57%), Postives = 140/280 (50.00%), Query Frame = 0 Query: 1 MIARRIGQ-SLRTVCRFSLRRVAPFCSSSSDHPRFSSVYSDAKRGGSAVYRHALKFQRPTTIKWQPQLENSVNFIGTVVRPLERSNV---NYTLTQR-------------------WIRMESSACVTSY----FEVFGPFLFSCFIYSLDTNL-----------------------------------GEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEE-RGSRDLGSLSRVSTWVYDE 217
MI RRIG LR + + L F SS++ + RFS+ + D GGSA+YR ALKFQRPTT++ +P N ++ IGTV PL+ N N+ + R W++M C+ F L S + +LD L GEA M Y+++ YLW V+F NP+EWWDNRK+K P PDFKHK TGEALWL+P DPPW+KKQLQ +DS + E G R+ S VS WVYDE
Sbjct: 1 MIVRRIGALILRRISQLPLPDRTLFHSSAASNRRFSNHFVDDDEGGSAIYRLALKFQRPTTVEVEPSSRNRISLIGTVDEPLKVMNTRSDNFGVQTRLNVKNPYDSDCRFKIRLKMWMKM-GKICMEHVKPGDFIYVSGVLGSFSVATLDKQLIIYYQVTVTELSFVTHHGERSTTRECKELESEQDVGEASMGSYDSQLYLWQVFFTNPFEWWDNRKSKKNPRQPDFKHKDTGEALWLNPNDPPWIKKQLQLLDSKLAEGLGDRESRRYS-VSEWVYDE 278
BLAST of CMJ_chr3_024540.1 vs. ExPASy TrEMBL
Match: A0A5D2GHY8|A0A5D2GHY8_GOSDA (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A05G212700v1 PE=4 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 9.629e-48 Identity = 108/280 (38.57%), Postives = 140/280 (50.00%), Query Frame = 0 Query: 1 MIARRIGQ-SLRTVCRFSLRRVAPFCSSSSDHPRFSSVYSDAKRGGSAVYRHALKFQRPTTIKWQPQLENSVNFIGTVVRPLERSNV---NYTLTQR-------------------WIRMESSACVTSY----FEVFGPFLFSCFIYSLDTNL-----------------------------------GEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEE-RGSRDLGSLSRVSTWVYDE 217
MI RRIG LR + + L F SS++ + RFS+ + D GGSA+YR ALKFQRPTT++ +P N ++ IGTV PL+ N N+ + R W++M C+ F L S + +LD L GEA M Y+++ YLW V+F NP+EWWDNRK+K P PDFKHK TGEALWL+P DPPW+KKQLQ +DS + E G R+ S VS WVYDE
Sbjct: 1 MIVRRIGALILRRISQLPLPDRTLFHSSAASNRRFSNHFVDDDEGGSAIYRLALKFQRPTTVEVEPSSRNRISLIGTVDEPLKVMNTRSDNFGVQTRLNVKNPYDSDCRFKIRLKMWMKM-GKICMEHVKPGDFIYVSGVLGSFSVATLDKQLIIYYQVTVTELSFVTHHGERSTTRECKELESEQDVGEASMGSYDSQLYLWQVFFTNPFEWWDNRKSKKNPRQPDFKHKDTGEALWLNPNDPPWIKKQLQLLDSKLAEGLGDRESRRYS-VSEWVYDE 278
BLAST of CMJ_chr3_024540.1 vs. ExPASy Swiss-Prot
Match: OSB1_ARATH (Protein OSB1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OSB1 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.340e-18 Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 0 Query: 132 EKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMM----EERGSRD 203
E ++ YLW V+F+NPY+WWDNR+NK P PDFKHK TGEALWL P W+ ++L+ D EE+ RD
Sbjct: 180 ESKKDEIYLWQVFFSNPYDWWDNRRNKKNPKQPDFKHKDTGEALWLCSDLPDWITRRLELFDQKNRFYDEEKTRRD 255
BLAST of CMJ_chr3_024540.1 vs. Araport11
Match: AT1G47720.1 (| Primosome PriB/single-strand DNA-binding protein | Chr1:17561514-17562859 REVERSE LENGTH=261 | 201606) HSP 1 Score: 84.7297 bits (208), Expect = 1.371e-19 Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 0 Query: 132 EKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMM----EERGSRD 203
E ++ YLW V+F+NPY+WWDNR+NK P PDFKHK TGEALWL P W+ ++L+ D EE+ RD
Sbjct: 180 ESKKDEIYLWQVFFSNPYDWWDNRRNKKNPKQPDFKHKDTGEALWLCSDLPDWITRRLELFDQKNRFYDEEKTRRD 255
BLAST of CMJ_chr3_024540.1 vs. Araport11
Match: AT4G20010.1 (| plastid transcriptionally active 9 | Chr4:10842128-10843989 FORWARD LENGTH=371 | 201606) HSP 1 Score: 58.151 bits (139), Expect = 7.897e-10 Identity = 30/55 (54.55%), Postives = 33/55 (60.00%), Query Frame = 0 Query: 141 WHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLD-------PKDPPWVKKQ 188
W NP +WWDNR +K APDFKHK TGEALWL+ PK PP KKQ
Sbjct: 312 WKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWLNESPTWVLPKLPPVKKKQ 366
BLAST of CMJ_chr3_024540.1 vs. Araport11
Match: AT4G20010.2 (| plastid transcriptionally active 9 | Chr4:10842128-10843989 FORWARD LENGTH=371 | 201606) HSP 1 Score: 58.151 bits (139), Expect = 8.356e-10 Identity = 30/55 (54.55%), Postives = 33/55 (60.00%), Query Frame = 0 Query: 141 WHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLD-------PKDPPWVKKQ 188
W NP +WWDNR +K APDFKHK TGEALWL+ PK PP KKQ
Sbjct: 312 WKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWLNESPTWVLPKLPPVKKKQ 366 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_024540.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_024540.1 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 1 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_024540.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 3 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_024540.1_cmj_v1 ID=CMJ_chr3_024540.1_cmj_v1; Name=CMJ_chr3_024540.1; organism=Citrus maxima; type=mRNA; length=654bpback to top protein sequence of CMJ_chr3_024540.1_cmj_v1 >CMJ_chr3_024540.1_cmj_v1 ID=CMJ_chr3_024540.1_cmj_v1; Name=CMJ_chr3_024540.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=218bpback to top mRNA from alignment at chr3:39941614..39943666+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2053bp; location=Sequence derived from: chr3:39941614..39943666+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:39941614..39943666+ >CMJ_chr3_024540.1_cmj_v1 ID=CMJ_chr3_024540.1_cmj_v1; Name=CMJ_chr3_024540.1; organism=Citrus maxima; type=CDS; length=654bp; location=Sequence derived from: chr3:39941614..39943666+ (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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