CMJ_chr3_024750.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_024750.1 vs. ExPASy TrEMBL
Match: A0A067H0D4|A0A067H0D4_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g045894mg PE=4 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 1.240e-68 Identity = 105/108 (97.22%), Postives = 105/108 (97.22%), Query Frame = 0 Query: 1 MTDVNSKNKSNLS--VSVSSEADSISNTEDQEEPEGQNIVTSHVYLRPTHTSRSLDKETVLRRIRHRKRMDKVRNAVQGVLRLGPASPKTDSPSAPQLKWVDDPFAAL 106 MTDVNSKNKSNLS VSVSSEADSI NTEDQEEPEGQNIVTSHVYLRPTHTSRSLDKETVLRRIRHRKRMDKVRNAVQGVLRLGPASPKTDSPSAPQLKWVDDPFAAL Sbjct: 1 MTDVNSKNKSNLSISVSVSSEADSIGNTEDQEEPEGQNIVTSHVYLRPTHTSRSLDKETVLRRIRHRKRMDKVRNAVQGVLRLGPASPKTDSPSAPQLKWVDDPFAAL 108
BLAST of CMJ_chr3_024750.1 vs. ExPASy TrEMBL
Match: A0A2H5NGW1|A0A2H5NGW1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_044250 PE=4 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 3.195e-67 Identity = 103/108 (95.37%), Postives = 104/108 (96.30%), Query Frame = 0 Query: 1 MTDVNSKNKSNLS--VSVSSEADSISNTEDQEEPEGQNIVTSHVYLRPTHTSRSLDKETVLRRIRHRKRMDKVRNAVQGVLRLGPASPKTDSPSAPQLKWVDDPFAAL 106 MTDVNSK+KSNLS VSVSSEADSI NTEDQEEPEGQNIVTSHVYLRPTHTSRSLDKETVLRRIRHRKRMDKVRNAVQGVLRLGP SPKTDSPSAPQLKWVDDPFAAL Sbjct: 1 MTDVNSKDKSNLSISVSVSSEADSIGNTEDQEEPEGQNIVTSHVYLRPTHTSRSLDKETVLRRIRHRKRMDKVRNAVQGVLRLGPVSPKTDSPSAPQLKWVDDPFAAL 108
BLAST of CMJ_chr3_024750.1 vs. ExPASy TrEMBL
Match: V4V7S6|V4V7S6_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002912mg PE=4 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 3.195e-67 Identity = 103/108 (95.37%), Postives = 104/108 (96.30%), Query Frame = 0 Query: 1 MTDVNSKNKSNLS--VSVSSEADSISNTEDQEEPEGQNIVTSHVYLRPTHTSRSLDKETVLRRIRHRKRMDKVRNAVQGVLRLGPASPKTDSPSAPQLKWVDDPFAAL 106 MTDVNSK+KSNLS VSVSSEADSI NTEDQEEPEGQNIVTSHVYLRPTHTSRSLDKETVLRRIRHRKRMDKVRNAVQGVLRLGP SPKTDSPSAPQLKWVDDPFAAL Sbjct: 1 MTDVNSKDKSNLSISVSVSSEADSIGNTEDQEEPEGQNIVTSHVYLRPTHTSRSLDKETVLRRIRHRKRMDKVRNAVQGVLRLGPVSPKTDSPSAPQLKWVDDPFAAL 108
BLAST of CMJ_chr3_024750.1 vs. ExPASy TrEMBL
Match: A0A5C7H5Q4|A0A5C7H5Q4_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_021473 PE=4 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 8.619e-25 Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 0 Query: 20 ADSISNTEDQEEPEGQNIVTSHVYLRPTHTSRSLDKETVLRRIRHRKRMDKVRNAVQGVLRLGPASPKTDSPSAPQLKWVDDPFAA 105 +D I+ T E+ E N V+SH+YLRPTHTS +LDK+ VLRRIRHRKR++KVRNA+QG L + KTD S +KW+DD FAA Sbjct: 12 SDLITETNTHEDQESLNYVSSHLYLRPTHTSETLDKDVVLRRIRHRKRLNKVRNALQGFLGWSVPTNKTDKVS---VKWLDDAFAA 94
BLAST of CMJ_chr3_024750.1 vs. ExPASy TrEMBL
Match: A0A061FJL2|A0A061FJL2_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_033960 PE=4 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 5.320e-22 Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 0 Query: 13 SVSVSSEADSISNTEDQEEPEGQNIVTSHVYLRPTHTSRSLDKETVLRRIRHRKRMDKVRNAVQGVLRLGPASPKTDSPSAPQLKWVDDPFAAL 106 ++ + + D+ + EDQEE E + VTSH++++P+H+ ++LDKE VLRRIRHRKRM+ V++A+Q L + + S LKW+DD FAAL Sbjct: 9 NIIIKDDDDNNNCAEDQEEQENMDYVTSHLHMKPSHSKQTLDKEVVLRRIRHRKRMNNVKSALQSFLGSSLQAKTENKVSVHGLKWIDDAFAAL 102
BLAST of CMJ_chr3_024750.1 vs. ExPASy TrEMBL
Match: A0A2P5DA34|A0A2P5DA34_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_083290 PE=4 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.842e-21 Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 0 Query: 38 VTSHVYLRPTHTSRSLDKETVLRRIRHRKRMDKVRNAVQGVLRLGPASP-KTDSPSAPQLKWVDDPFAAL 106 VTSH+YL+P H+S+SLDKE VLRRIR RKR++ VR A+Q VLRL +SP K + S PQ +WVDD FAAL Sbjct: 42 VTSHLYLKPAHSSQSLDKEEVLRRIRQRKRVNMVRTALQSVLRLPSSSPSKPNKVSVPQRRWVDDAFAAL 111
BLAST of CMJ_chr3_024750.1 vs. ExPASy TrEMBL
Match: A0A2N9G0R5|A0A2N9G0R5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20842 PE=4 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 3.501e-21 Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 0 Query: 23 ISNTEDQEEPEGQNIVTSHVYLRPTHTSRSLDKETVLRRIRHRKRMDKVRNAVQGVLRLGPASPKTDSPSAPQLKWVDDPFAAL 106 I+ E+QE PE QN VTSH+Y++PTH+++ LDKE VLRRIR RKR++KV+ Q ++ P S K D S + KW DD FAAL Sbjct: 23 IAVDEEQEVPETQNPVTSHLYIKPTHSTQPLDKEVVLRRIRQRKRVNKVKATFQALVS-SPFSAKPDKVSVHKKKWADDAFAAL 105
BLAST of CMJ_chr3_024750.1 vs. ExPASy TrEMBL
Match: A0A6M2E7Z4|A0A6M2E7Z4_9ROSI (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 8.288e-21 Identity = 48/105 (45.71%), Postives = 70/105 (66.67%), Query Frame = 0 Query: 1 MTDVNSKNKSNLSVSVSSEADSISNTEDQEEPEGQNIVTSHVYLRPTHTSRSLDKETVLRRIRHRKRMDKVRNAVQGVLRLGPASPKTDSPSAPQLKWVDDPFAA 105 M+ + SK +S LS S +++ + T+DQE+PE N VTS VY++P H++++ DKE +L+RIR RKR +KVR ++QG L +S + SA KWVDD FAA Sbjct: 1 MSSLASKTQSTLSKSEKITSNASTATKDQEDPEIFNSVTSFVYIKPEHSTKTRDKEEILQRIRQRKRANKVRGSLQGFLGWLFSSKSENKVSA---KWVDDAFAA 102
BLAST of CMJ_chr3_024750.1 vs. ExPASy TrEMBL
Match: A0A6A3CIP7|A0A6A3CIP7_HIBSY (Kinase superfamily protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00003725pilonHSYRG00075 PE=4 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.693e-20 Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 0 Query: 27 EDQEEPEGQNIVTSHVYLRPTHTSRSLDKETVLRRIRHRKRMDKVRNAVQGVLRLGPASPK--TDSPSAPQLKWVDDPFAAL 106 +DQEE E + ++SH+YL+P+H+ ++LDK VLRRIRHRKR++ R+A+Q +G +SP + S ++KWVDD FAAL Sbjct: 21 DDQEEQEKMDCISSHLYLKPSHSKQTLDKHVVLRRIRHRKRINNFRSALQSF--IGSSSPAKINNKASGHEIKWVDDAFAAL 100
BLAST of CMJ_chr3_024750.1 vs. ExPASy TrEMBL
Match: A0A4U5QZG8|A0A4U5QZG8_POPAL (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000028270 PE=4 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 2.753e-20 Identity = 47/105 (44.76%), Postives = 70/105 (66.67%), Query Frame = 0 Query: 1 MTDVNSKNKSNLSVSVSSEADSISNTEDQEEPEGQNIVTSHVYLRPTHTSRSLDKETVLRRIRHRKRMDKVRNAVQGVLRLGPASPKTDSPSAPQLKWVDDPFAA 105 M+ + SK +S LS S +++ + T+DQE+PE N VTS VY++P H++++ DK+ +L+RIR RKR +KVR ++QG L +S + SA KWVDD FAA Sbjct: 1 MSSLASKTQSTLSKSEKITSNASTATKDQEDPEIFNSVTSFVYIKPVHSTKTRDKDEILQRIRQRKRANKVRGSLQGFLGWLFSSKSENKVSA---KWVDDAFAA 102 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_024750.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_024750.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_024750.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_024750.1_cmj_v1 ID=CMJ_chr3_024750.1_cmj_v1; Name=CMJ_chr3_024750.1; organism=Citrus maxima; type=mRNA; length=321bpback to top protein sequence of CMJ_chr3_024750.1_cmj_v1 >CMJ_chr3_024750.1_cmj_v1 ID=CMJ_chr3_024750.1_cmj_v1; Name=CMJ_chr3_024750.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=107bpback to top mRNA from alignment at chr3:40063305..40064186+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=882bp; location=Sequence derived from: chr3:40063305..40064186+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:40063305..40064186+ >CMJ_chr3_024750.1_cmj_v1 ID=CMJ_chr3_024750.1_cmj_v1; Name=CMJ_chr3_024750.1; organism=Citrus maxima; type=CDS; length=321bp; location=Sequence derived from: chr3:40063305..40064186+ (Citrus maximaback to top |