CMJ_chr3_025020.7
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_025020.7 vs. ExPASy TrEMBL
Match: A0A2H5NTN1|A0A2H5NTN1_CITUN (NAC domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_072180 PE=4 SV=1) HSP 1 Score: 401.364 bits (1030), Expect = 1.372e-137 Identity = 196/200 (98.00%), Postives = 197/200 (98.50%), Query Frame = 0 Query: 46 QVSNDGESRTSAVMGRPTNHAEDNLPEADNFSEDDFLELHDLDQPLSPSSSSDNSSCMTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFPGSLINVEGSKPETGDIFKTESDSATVNRPLDSRALKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNGEKKAAVGRMKKLKRKYFCFMPF 245 +VSNDGESRTSAVMGRPTNHAEDNLPEADNFSEDDFLELHDLDQPLSPSSSSDNSS MTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFPGSLINVEGSKPETGDIFKTESDSA VNRPLDSR LKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNGEKKAAVGRMKKLKRKYFCFMPF Sbjct: 187 EVSNDGESRTSAVMGRPTNHAEDNLPEADNFSEDDFLELHDLDQPLSPSSSSDNSSGMTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFPGSLINVEGSKPETGDIFKTESDSAMVNRPLDSRVLKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNGEKKAAVGRMKKLKRKYFCFMPF 386
BLAST of CMJ_chr3_025020.7 vs. ExPASy TrEMBL
Match: V4T4U1|V4T4U1_CITCL (NAC domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10001389mg PE=4 SV=1) HSP 1 Score: 392.504 bits (1007), Expect = 4.776e-134 Identity = 193/200 (96.50%), Postives = 194/200 (97.00%), Query Frame = 0 Query: 46 QVSNDGESRTSAVMGRPTNHAEDNLPEADNFSEDDFLELHDLDQPLSPSSSSDNSSCMTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFPGSLINVEGSKPETGDIFKTESDSATVNRPLDSRALKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNGEKKAAVGRMKKLKRKYFCFMPF 245 +VSNDGESRTSAVM RPTNHAEDNLPEADNFSEDDFLELHDLDQPLSPSSSSDNSS MTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFPGSLINVEGSKPETGDIFKTESDSA VNR LDSR LKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNG KKAAVGRMKKLKRKYFCFMPF Sbjct: 187 EVSNDGESRTSAVMERPTNHAEDNLPEADNFSEDDFLELHDLDQPLSPSSSSDNSSGMTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFPGSLINVEGSKPETGDIFKTESDSAMVNRTLDSRVLKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNGGKKAAVGRMKKLKRKYFCFMPF 386
BLAST of CMJ_chr3_025020.7 vs. ExPASy TrEMBL
Match: V4V7V7|V4V7V7_CITCL (NAC domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10001389mg PE=4 SV=1) HSP 1 Score: 391.734 bits (1005), Expect = 1.144e-133 Identity = 193/200 (96.50%), Postives = 194/200 (97.00%), Query Frame = 0 Query: 46 QVSNDGESRTSAVMGRPTNHAEDNLPEADNFSEDDFLELHDLDQPLSPSSSSDNSSCMTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFPGSLINVEGSKPETGDIFKTESDSATVNRPLDSRALKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNGEKKAAVGRMKKLKRKYFCFMPF 245 +VSNDGESRTSAVM RPTNHAEDNLPEADNFSEDDFLELHDLDQPLSPSSSSDNSS MTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFPGSLINVEGSKPETGDIFKTESDSA VNR LDSR LKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNG KKAAVGRMKKLKRKYFCFMPF Sbjct: 198 EVSNDGESRTSAVMERPTNHAEDNLPEADNFSEDDFLELHDLDQPLSPSSSSDNSSGMTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFPGSLINVEGSKPETGDIFKTESDSAMVNRTLDSRVLKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNGGKKAAVGRMKKLKRKYFCFMPF 397
BLAST of CMJ_chr3_025020.7 vs. ExPASy TrEMBL
Match: A0A067H0J0|A0A067H0J0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032275mg PE=4 SV=1) HSP 1 Score: 292.352 bits (747), Expect = 3.740e-98 Identity = 140/143 (97.90%), Postives = 140/143 (97.90%), Query Frame = 0 Query: 103 MTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFPGSLINVEGSKPETGDIFKTESDSATVNRPLDSRALKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNGEKKAAVGRMKKLKRKYFCFMPF 245 MTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFPGSLINVEGSKPETGDIFKTESDSA VNR LDSR LKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNGEKKAAVGRMKKLKRKYFCFMPF Sbjct: 1 MTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFPGSLINVEGSKPETGDIFKTESDSAMVNRTLDSRVLKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNGEKKAAVGRMKKLKRKYFCFMPF 143
BLAST of CMJ_chr3_025020.7 vs. ExPASy TrEMBL
Match: A0A067H9X8|A0A067H9X8_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032275mg PE=4 SV=1) HSP 1 Score: 287.73 bits (735), Expect = 2.459e-96 Identity = 140/144 (97.22%), Postives = 140/144 (97.22%), Query Frame = 0 Query: 103 MTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFP-GSLINVEGSKPETGDIFKTESDSATVNRPLDSRALKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNGEKKAAVGRMKKLKRKYFCFMPF 245 MTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFP GSLINVEGSKPETGDIFKTESDSA VNR LDSR LKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNGEKKAAVGRMKKLKRKYFCFMPF Sbjct: 1 MTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFPAGSLINVEGSKPETGDIFKTESDSAMVNRTLDSRVLKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNGEKKAAVGRMKKLKRKYFCFMPF 144
BLAST of CMJ_chr3_025020.7 vs. ExPASy TrEMBL
Match: A0A6M2F330|A0A6M2F330_9ROSI (NAC domain-containing protein OS=Populus davidiana OX=266767 PE=4 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.103e-37 Identity = 103/226 (45.58%), Postives = 137/226 (60.62%), Query Frame = 0 Query: 27 VDLT---GVGTFSLCVEASNL-LQVSNDGESRTSAVMGRPTNHAEDNLPEADNFSEDDFLELHDLDQPLSPSSSSDNSSCMTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFP---GSLINVEGSKPETGDIFKTESDSATVNRPLDSRALKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNGEKKAAVGRMKKLKRKYFCFMPF 245 +DLT G GT + S+ +V+ D E+ GRP N NLPE D FS DFLEL DLD P S SSSSDNSSCMT+SSDEYFD +ALL++LE N+ + ++ +YK S + SH P+EVV+ P GS I++EG KP E+D++ +++AV+ Q AN+ GE PSS+SH +S G +A + E+KAA R KK K KY CF+PF Sbjct: 187 IDLTQSIGPGTLADTSHGSSSNPEVNKDDETENMVATGRPPNLPVANLPEIDCFSRGDFLELLDLDNPASRSSSSDNSSCMTMSSDEYFDSIALLRDLESESNQALAQKDKDYKLSVTASHRPDEVVVLPASQGSYISIEGGKPHA-----VETDTSMQGNGHRDLDIQRAVRNQGANHWGEGPSSSSHAVGASSGGHVASPDEEEKAARRRRKKSKNKYLCFVPF 407
BLAST of CMJ_chr3_025020.7 vs. ExPASy TrEMBL
Match: A0A4V6XX80|A0A4V6XX80_POPAL (NAC domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000028040 PE=4 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.357e-34 Identity = 92/203 (45.32%), Postives = 125/203 (61.58%), Query Frame = 0 Query: 46 QVSNDGESRTSAVMGRPTNHAEDNLPEADNFSEDDFLELHDLDQPLSPSSSSDNSSCMTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFP---GSLINVEGSKPETGDIFKTESDSATVNRPLDSRALKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNGEKKAAVGRMKKLKRKYFCFMPF 245 +V+ D E+ GRP N NLPE D FS DFLEL DLD P S SSSSDNSSCMT+SSDEYFD +ALL++LE N+ + ++ + K S + SH P+EVV+ P GS I++EG +P E+D++ +++AV+ Q AN+ GE SS+ H +S G +A + E+KAA R KK K+KY CF+PF Sbjct: 208 EVNKDDETENMVATGRPPNLPVANLPEIDCFSRGDFLELLDLDNPASRSSSSDNSSCMTMSSDEYFDSIALLRDLESESNQALAQKDKDCKLSVTASHRPDEVVVLPASQGSYISIEGGRPHA-----VETDTSMQGNGHRDLDIQRAVRNQGANHWGEGSSSSFHAVGASSGGHVASPDEEEKAARSRRKKTKKKYLCFVPF 405
BLAST of CMJ_chr3_025020.7 vs. ExPASy TrEMBL
Match: A9PEC8|A9PEC8_POPTR (NAC domain-containing protein OS=Populus trichocarpa OX=3694 PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 8.250e-33 Identity = 102/226 (45.13%), Postives = 134/226 (59.29%), Query Frame = 0 Query: 27 VDLT---GVGTFSLCVEASNL-LQVSNDGESRTSAVMGRPTNHAEDNLPEADNFSEDDFLELHDLDQPLSPSSSSDNSSCMTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFP---GSLINVEGSKPETGDIFKTESDSATVNRPLDSRALKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNGEKKAAVGRMKKLKRKYFCFMPF 245 +DLT G GT + S+ +V+ D E+ GRP N NLPE D FS D+LEL DLD P S SSSSDNSSCMT+SSDEYFD +ALL++LE N+ + ++ + K S + S P+EVV+ P GS I+ EG KP E+DS+ ++QAV+ Q AN+ GE PSSN H +S G +A + E+KAA R KK K+KY CF+PF Sbjct: 191 IDLTQSIGPGTLADTSHGSSSNPEVNKDDETENMVATGRPPNLPVANLPEIDCFSRGDYLELLDLDNPASRSSSSDNSSCMTMSSDEYFDSIALLRDLESESNQALAQKDKDCKLSVAASLRPDEVVVLPASHGSYISNEGGKPHA-----VETDSSINGNGHRDLDIQQAVRNQGANHWGEGPSSNFHAVGASSGGHVASPDEEEKAARRRRKKSKKKYLCFVPF 411
BLAST of CMJ_chr3_025020.7 vs. ExPASy TrEMBL
Match: A0A2K1XQ81|A0A2K1XQ81_POPTR (NAC domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G041300 PE=4 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.916e-32 Identity = 101/226 (44.69%), Postives = 134/226 (59.29%), Query Frame = 0 Query: 27 VDLT---GVGTFSLCVEASNL-LQVSNDGESRTSAVMGRPTNHAEDNLPEADNFSEDDFLELHDLDQPLSPSSSSDNSSCMTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFP---GSLINVEGSKPETGDIFKTESDSATVNRPLDSRALKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNGEKKAAVGRMKKLKRKYFCFMPF 245 +DLT G GT + S+ +V+ D E+ GRP N NLPE D FS D+LEL DLD P S SSSSDNSSCMT+SSDEYFD +ALL++LE N+ + ++ + K S + S P+EVV+ P GS I+ EG KP E+DS+ +++AV+ Q AN+ GE PSSN H +S G +A + E+KAA R KK K+KY CF+PF Sbjct: 161 IDLTQSIGPGTLADTSHGSSSNPEVNKDDETENMVATGRPPNLPVANLPEIDCFSRGDYLELLDLDNPASRSSSSDNSSCMTMSSDEYFDSIALLRDLESESNQALAQKDKDCKLSVAASLRPDEVVVLPASHGSYISNEGGKPHA-----VETDSSINGNGHRDLDIQRAVRNQGANHWGEGPSSNFHAVGASSGGHVASPDEEEKAARRRRKKSKKKYLCFVPF 381
BLAST of CMJ_chr3_025020.7 vs. ExPASy TrEMBL
Match: A0A2K1XQ82|A0A2K1XQ82_POPTR (NAC domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G041300 PE=4 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 2.717e-32 Identity = 101/226 (44.69%), Postives = 134/226 (59.29%), Query Frame = 0 Query: 27 VDLT---GVGTFSLCVEASNL-LQVSNDGESRTSAVMGRPTNHAEDNLPEADNFSEDDFLELHDLDQPLSPSSSSDNSSCMTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVVIFP---GSLINVEGSKPETGDIFKTESDSATVNRPLDSRALKQAVQGQKANYRGESPSSNSHGQTSSFNGQIALQNGEKKAAVGRMKKLKRKYFCFMPF 245 +DLT G GT + S+ +V+ D E+ GRP N NLPE D FS D+LEL DLD P S SSSSDNSSCMT+SSDEYFD +ALL++LE N+ + ++ + K S + S P+EVV+ P GS I+ EG KP E+DS+ +++AV+ Q AN+ GE PSSN H +S G +A + E+KAA R KK K+KY CF+PF Sbjct: 185 IDLTQSIGPGTLADTSHGSSSNPEVNKDDETENMVATGRPPNLPVANLPEIDCFSRGDYLELLDLDNPASRSSSSDNSSCMTMSSDEYFDSIALLRDLESESNQALAQKDKDCKLSVAASLRPDEVVVLPASHGSYISNEGGKPHA-----VETDSSINGNGHRDLDIQRAVRNQGANHWGEGPSSNFHAVGASSGGHVASPDEEEKAARRRRKKSKKKYLCFVPF 405 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_025020.7 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_025020.7 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_025020.7 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_025020.7_cmj_v1 ID=CMJ_chr3_025020.7_cmj_v1; Name=CMJ_chr3_025020.7; organism=Citrus maxima; type=mRNA; length=738bpback to top protein sequence of CMJ_chr3_025020.7_cmj_v1 >CMJ_chr3_025020.7_cmj_v1 ID=CMJ_chr3_025020.7_cmj_v1; Name=CMJ_chr3_025020.7_cmj_v1; organism=Citrus maxima; type=polypeptide; length=246bpback to top mRNA from alignment at chr3:40269152..40273067- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=3916bp; location=Sequence derived from: chr3:40269152..40273067- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:40269152..40273067- >CMJ_chr3_025020.7_cmj_v1 ID=CMJ_chr3_025020.7_cmj_v1; Name=CMJ_chr3_025020.7; organism=Citrus maxima; type=CDS; length=738bp; location=Sequence derived from: chr3:40269152..40273067- (Citrus maximaback to top |