CMJ_chr3_026510.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_026510.1 vs. ExPASy TrEMBL
Match: A0A067HAZ0|A0A067HAZ0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g031166mg PE=4 SV=1) HSP 1 Score: 319.316 bits (817), Expect = 3.593e-110 Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0 Query: 1 MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPWIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 157
MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYP IRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD
Sbjct: 1 MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 157
BLAST of CMJ_chr3_026510.1 vs. ExPASy TrEMBL
Match: V4TA51|V4TA51_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002412mg PE=4 SV=1) HSP 1 Score: 315.849 bits (808), Expect = 5.965e-108 Identity = 154/157 (98.09%), Postives = 154/157 (98.09%), Query Frame = 0 Query: 1 MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPWIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 157
MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYP IRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGSV VELGGDERE SKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD
Sbjct: 59 MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGSVKVELGGDEREVSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 215
BLAST of CMJ_chr3_026510.1 vs. ExPASy TrEMBL
Match: A0A067GYN7|A0A067GYN7_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g031166mg PE=4 SV=1) HSP 1 Score: 271.166 bits (692), Expect = 4.965e-91 Identity = 142/171 (83.04%), Postives = 143/171 (83.63%), Query Frame = 0 Query: 1 MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPWIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQR--------------CRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 157
MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYP IRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNA FP G+G R CRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD
Sbjct: 1 MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 164
BLAST of CMJ_chr3_026510.1 vs. ExPASy TrEMBL
Match: A0A067HAK3|A0A067HAK3_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g031166mg PE=4 SV=1) HSP 1 Score: 270.011 bits (689), Expect = 1.374e-90 Identity = 141/169 (83.43%), Postives = 142/169 (84.02%), Query Frame = 0 Query: 1 MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPWIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQ------------RCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 157
MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYP IRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNA FP G+G RC FCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD
Sbjct: 1 MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 162
BLAST of CMJ_chr3_026510.1 vs. ExPASy TrEMBL
Match: A0A6J1F877|A0A6J1F877_CUCMO (protein SPA, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111443033 PE=4 SV=1) HSP 1 Score: 264.233 bits (674), Expect = 2.699e-88 Identity = 126/158 (79.75%), Postives = 145/158 (91.77%), Query Frame = 0 Query: 1 MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPWIRA-ELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 157
M++APS++RLHSPFL CPL SS++ +++ S RNQRS A YP IRA +LDQNTVVA+SVGL S+AVGIGIP+FYETQIDNAAKRENTQPCFPC+GSGAQRCRFCMGTG+VTVELGGDE+E S+CINCDGVG+LTCTTCQG+GIQPRYLDRREFKDDD
Sbjct: 1 MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFS-RNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGAQRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD 157
BLAST of CMJ_chr3_026510.1 vs. ExPASy TrEMBL
Match: A0A6J1IFD3|A0A6J1IFD3_CUCMA (protein SPA, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111476444 PE=4 SV=1) HSP 1 Score: 264.233 bits (674), Expect = 2.699e-88 Identity = 126/158 (79.75%), Postives = 145/158 (91.77%), Query Frame = 0 Query: 1 MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPWIRA-ELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 157
M++APS++RLHSPFL CPL SS++ +++ S RNQRS A YP IRA +LDQNTVVA+SVGL S+AVGIGIP+FYETQIDNAAKRENTQPCFPC+GSGAQRCRFCMGTG+VTVELGGDE+E S+CINCDGVG+LTCTTCQG+GIQPRYLDRREFKDDD
Sbjct: 1 MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFS-RNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGAQRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD 157
BLAST of CMJ_chr3_026510.1 vs. ExPASy TrEMBL
Match: V4TFF0|V4TFF0_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002412mg PE=4 SV=1) HSP 1 Score: 265.774 bits (678), Expect = 4.867e-88 Identity = 139/169 (82.25%), Postives = 140/169 (82.84%), Query Frame = 0 Query: 1 MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPWIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQ------------RCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 157
MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYP IRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNA FP G+G RC FCMGTGSV VELGGDERE SKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD
Sbjct: 59 MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYD-------FPFFGAGQARKYSAVLPLQWLRCSFCMGTGSVKVELGGDEREVSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 220
BLAST of CMJ_chr3_026510.1 vs. ExPASy TrEMBL
Match: A0A1S3CRE4|A0A1S3CRE4_CUCME (protein SPA, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503884 PE=4 SV=1) HSP 1 Score: 263.462 bits (672), Expect = 5.269e-88 Identity = 128/158 (81.01%), Postives = 144/158 (91.14%), Query Frame = 0 Query: 1 MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPWIRA-ELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 157
M++APS++RLHSPFL CPL SS++ +V+ S NQRS YP IRA +LDQNTVVA+SVGLVSVAVGIGIP+FYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTG+VTVELGGDE+E S+CINCDGVG+LTCTTCQG+GIQPRYLDRREFKDDD
Sbjct: 1 MTVAPSLSRLHSPFLYCPLKPTSSTSLSVTFSG-NQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAVGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD 157
BLAST of CMJ_chr3_026510.1 vs. ExPASy TrEMBL
Match: B9R876|B9R876_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1597430 PE=4 SV=1) HSP 1 Score: 263.077 bits (671), Expect = 5.622e-88 Identity = 128/158 (81.01%), Postives = 142/158 (89.87%), Query Frame = 0 Query: 1 MSLAPSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRSSAPYPWIRA-ELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 157
M LAPS+ RLHSPFLCCPL + +A+ SL RNQRSS+ YP IRA +LDQNTVVAISVG+VS+A+GIGIP+FYETQIDNAAKRENTQPCFPC+GSGAQRCRFC GTGSVTVELGG+E+E S+CINCDG GSLTCTTCQGTGIQPRYLDRREFKDDD
Sbjct: 1 MPLAPSIPRLHSPFLCCPLKTSTLTASCKSL--RNQRSSSSYPCIRAIDLDQNTVVAISVGVVSIAIGIGIPVFYETQIDNAAKRENTQPCFPCNGSGAQRCRFCTGTGSVTVELGGEEKEVSRCINCDGAGSLTCTTCQGTGIQPRYLDRREFKDDD 156
BLAST of CMJ_chr3_026510.1 vs. ExPASy TrEMBL
Match: A0A067KLC7|A0A067KLC7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08228 PE=4 SV=1) HSP 1 Score: 263.077 bits (671), Expect = 7.845e-88 Identity = 126/160 (78.75%), Postives = 142/160 (88.75%), Query Frame = 0 Query: 1 MSLAPSVTRLHSPFLCCPLNKLSSSATTVSL--SQRNQRSSAPYPWIRA-ELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 157
M +APS++R HSPFLCCP S SA++V S RNQR A YP IRA ELDQNT+VAI+VG+VSVA+GIGIP+FYETQIDNAAKRENTQPCFPC+GSGAQ+CRFC+GTGSVTVELGGDE+E S+CINCDGVGSLTCTTCQG+GIQPRYLDRREFKDDD
Sbjct: 1 MPVAPSISRFHSPFLCCPFKLSSFSASSVHFVKSARNQRFPASYPCIRAVELDQNTIVAITVGVVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCNGSGAQKCRFCLGTGSVTVELGGDEKEVSRCINCDGVGSLTCTTCQGSGIQPRYLDRREFKDDD 160
BLAST of CMJ_chr3_026510.1 vs. ExPASy Swiss-Prot
Match: LQY1_ARATH (Protein disulfide-isomerase LQY1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LQY1 PE=1 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 6.463e-80 Identity = 115/155 (74.19%), Postives = 130/155 (83.87%), Query Frame = 0 Query: 4 APSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRS-SAPYPWIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 157
APS RLHSPF+ CP+N T S S RN RS S YP I+AELD NTVVAISVG+ SVA+GIGIP+FYETQIDNAAKRENTQPCFPC+G+GAQ+CR C+G+G+VTVELGG E+E S CINCDG GSLTCTTCQG+G+QPRYLDRREFKDDD
Sbjct: 5 APSPPRLHSPFIHCPIN-----FTPSSFSARNLRSPSTSYPRIKAELDPNTVVAISVGVASVALGIGIPVFYETQIDNAAKRENTQPCFPCNGTGAQKCRLCVGSGNVTVELGGGEKEVSNCINCDGAGSLTCTTCQGSGVQPRYLDRREFKDDD 154
BLAST of CMJ_chr3_026510.1 vs. ExPASy Swiss-Prot
Match: SPA_SOLLC (Protein SPA, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SPA PE=2 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 3.421e-77 Identity = 113/160 (70.62%), Postives = 133/160 (83.12%), Query Frame = 0 Query: 1 MSLAPSVTRLHSPFLCCPLN--KLSSSATTVSLSQRNQRSSAPYPWIRA-ELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 157
M APS++R SPF+ PL LSSS T Q +R ++ YP I+A +LDQNTV+AI+VG++SVA+G+GIP+FYETQIDNAAKRENTQPCFPC+G+GAQ+CRFCMGTGSVTVELGG E E S+CINCDG G LTCTTCQG+GIQPRYLDRREFKDDD
Sbjct: 1 MLTAPSLSRFKSPFISSPLKLPTLSSSFFTQKFHQTCRRRNS-YPCIKAVDLDQNTVIAITVGVLSVAIGVGIPVFYETQIDNAAKRENTQPCFPCTGTGAQKCRFCMGTGSVTVELGGGETEVSRCINCDGAGGLTCTTCQGSGIQPRYLDRREFKDDD 159
BLAST of CMJ_chr3_026510.1 vs. Araport11
Match: AT1G75690.1 (| DnaJ/Hsp40 cysteine-rich domain superfamily protein | Chr1:28422273-28423170 REVERSE LENGTH=154 | 201606) HSP 1 Score: 236.498 bits (602), Expect = 6.612e-81 Identity = 115/155 (74.19%), Postives = 130/155 (83.87%), Query Frame = 0 Query: 4 APSVTRLHSPFLCCPLNKLSSSATTVSLSQRNQRS-SAPYPWIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 157
APS RLHSPF+ CP+N T S S RN RS S YP I+AELD NTVVAISVG+ SVA+GIGIP+FYETQIDNAAKRENTQPCFPC+G+GAQ+CR C+G+G+VTVELGG E+E S CINCDG GSLTCTTCQG+G+QPRYLDRREFKDDD
Sbjct: 5 APSPPRLHSPFIHCPIN-----FTPSSFSARNLRSPSTSYPRIKAELDPNTVVAISVGVASVALGIGIPVFYETQIDNAAKRENTQPCFPCNGTGAQKCRLCVGSGNVTVELGGGEKEVSNCINCDGAGSLTCTTCQGSGVQPRYLDRREFKDDD 154 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_026510.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_026510.1 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 2 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_026510.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_026510.1_cmj_v1 ID=CMJ_chr3_026510.1_cmj_v1; Name=CMJ_chr3_026510.1; organism=Citrus maxima; type=mRNA; length=474bpback to top protein sequence of CMJ_chr3_026510.1_cmj_v1 >CMJ_chr3_026510.1_cmj_v1 ID=CMJ_chr3_026510.1_cmj_v1; Name=CMJ_chr3_026510.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=158bpback to top mRNA from alignment at chr3:41255605..41257758- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2154bp; location=Sequence derived from: chr3:41255605..41257758- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:41255605..41257758- >CMJ_chr3_026510.1_cmj_v1 ID=CMJ_chr3_026510.1_cmj_v1; Name=CMJ_chr3_026510.1; organism=Citrus maxima; type=CDS; length=474bp; location=Sequence derived from: chr3:41255605..41257758- (Citrus maximaback to top |