CMJ_chr3_026570.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_026570.1 vs. ExPASy TrEMBL
Match: A0A067HAL4|A0A067HAL4_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g047366mg PE=4 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 3.334e-56 Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 Query: 38 MKLFNRFRKILMRLLFSFPSHGTSASTSSTASKQKACDKYEPPKTSCSSYYSSHSHYSEAIADCIEFFNKSSQEGILDGRKSDAW 122
MKLFNRFRKILMRLLFSFPSHGTSASTSSTASKQKACDKYEPPKTSCSSYYSSHSHYSEAIADCIEFFNKSSQEGILDGRKSDAW
Sbjct: 1 MKLFNRFRKILMRLLFSFPSHGTSASTSSTASKQKACDKYEPPKTSCSSYYSSHSHYSEAIADCIEFFNKSSQEGILDGRKSDAW 85
BLAST of CMJ_chr3_026570.1 vs. ExPASy TrEMBL
Match: V4T5D5|V4T5D5_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003277mg PE=4 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 7.320e-55 Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0 Query: 38 MKLFNRFRKILMRLLFSFPSHGTSASTSSTASKQKACDKYEPPKTSCSSYYSSHSHYSEAIADCIEFFNKSSQEGILDGRKSDAWV 123
MKLFNRFRKILMRLLFSFPSHGTSASTSSTASKQKACDKYEPPKTSCSSYYSSHSHYSEAIADCIEFFNKSSQEGILDGRKSDA +
Sbjct: 1 MKLFNRFRKILMRLLFSFPSHGTSASTSSTASKQKACDKYEPPKTSCSSYYSSHSHYSEAIADCIEFFNKSSQEGILDGRKSDATM 86
BLAST of CMJ_chr3_026570.1 vs. ExPASy TrEMBL
Match: A0A2N9E1M3|A0A2N9E1M3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS668 PE=4 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.150e-42 Identity = 90/123 (73.17%), Postives = 97/123 (78.86%), Query Frame = 0 Query: 3 IRRPQTQRESFVIQVRA--ATDHQQEVPQNKTLNFSAMKLFNRFRKILMRLLFSFPSHGTSASTSSTASKQKACDKYEPPKTSCSSYYSSHSHYSEAIADCIEFFNKSSQEGILDGRKSDAWV 123
+ RPQ RESFVIQVR A HQ K LNFSAMKLFNRFRKILMRLLFS PS G+SA++ S K CDK+EPPKTSCSSYYSSHSHY+EAIADCIEFFNKSSQEGI+DGRKSD V
Sbjct: 1 MHRPQ--RESFVIQVRGCEALLHQANTVSPK-LNFSAMKLFNRFRKILMRLLFSLPSSGSSATSGMANSGSKNCDKFEPPKTSCSSYYSSHSHYNEAIADCIEFFNKSSQEGIMDGRKSDVMV 120
BLAST of CMJ_chr3_026570.1 vs. ExPASy TrEMBL
Match: A0A2K2ALM6|A0A2K2ALM6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G238400 PE=4 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 6.874e-41 Identity = 83/119 (69.75%), Postives = 98/119 (82.35%), Query Frame = 0 Query: 9 QRESFVIQVRAATDHQQ----EVPQNKTLNFSAMKLFNRFRKILMRLLFSFPSHGTSASTSSTASKQKACDKYEPPKTSCSSYYSSHSHYSEAIADCIEFFNKSSQEGILDGRKSDAWV 123
QR+SFVIQVR ++ + + + PQ NFSAMKLFNRFRKILMRL+FS P+ TSS ASKQ++C++++PPKTSCSSYYSS+SHYSEAIADCIEFFNKSSQEGILDGRKSD WV
Sbjct: 5 QRDSFVIQVRGSSIYSEALSDQAPQASKFNFSAMKLFNRFRKILMRLVFSSPT------TSSMASKQRSCERFDPPKTSCSSYYSSNSHYSEAIADCIEFFNKSSQEGILDGRKSDVWV 117
BLAST of CMJ_chr3_026570.1 vs. ExPASy TrEMBL
Match: A0A4U5Q006|A0A4U5Q006_POPAL (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000152750 PE=4 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 7.504e-41 Identity = 83/119 (69.75%), Postives = 98/119 (82.35%), Query Frame = 0 Query: 9 QRESFVIQVRAATDHQQ----EVPQNKTLNFSAMKLFNRFRKILMRLLFSFPSHGTSASTSSTASKQKACDKYEPPKTSCSSYYSSHSHYSEAIADCIEFFNKSSQEGILDGRKSDAWV 123
QR+SFVIQVR ++ + + + PQ NFSAMKLFNRFRKILMRL+FS P+ TSS ASKQ++C++++PPKTSCSSYYSS+SHYSEAIADCIEFFNKSSQEGILDGRKSD WV
Sbjct: 5 QRDSFVIQVRGSSIYSEALSDQAPQASKFNFSAMKLFNRFRKILMRLVFSSPA------TSSMASKQRSCERFDPPKTSCSSYYSSNSHYSEAIADCIEFFNKSSQEGILDGRKSDVWV 117
BLAST of CMJ_chr3_026570.1 vs. ExPASy TrEMBL
Match: A0A6N2LFK1|A0A6N2LFK1_SALVM (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS212917 PE=4 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.365e-39 Identity = 82/121 (67.77%), Postives = 96/121 (79.34%), Query Frame = 0 Query: 7 QTQRESFVIQVRAATDHQQEV----PQNKTLNFSAMKLFNRFRKILMRLLFSFPSHGTSASTSSTASKQKACDKYEPPKTSCSSYYSSHSHYSEAIADCIEFFNKSSQEGILDGRKSDAWV 123
+ QR+SFVIQVR + + + + P+ LNFSAMKLFNRFRKILMRL+FS P TS ASKQ+ C++++PPKTSCSSYYSS+SHYSEAIADCIEFFNKSSQEGILDGRKSD WV
Sbjct: 3 KPQRDSFVIQVRGSGIYSEALCNQPPRASKLNFSAMKLFNRFRKILMRLVFSSPP------TSGMASKQRGCERFDPPKTSCSSYYSSNSHYSEAIADCIEFFNKSSQEGILDGRKSDVWV 117
BLAST of CMJ_chr3_026570.1 vs. ExPASy TrEMBL
Match: A0A5N5MR61|A0A5N5MR61_9ROSI (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_008579 PE=4 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 7.951e-39 Identity = 81/121 (66.94%), Postives = 97/121 (80.17%), Query Frame = 0 Query: 7 QTQRESFVIQVRAATDHQQEV----PQNKTLNFSAMKLFNRFRKILMRLLFSFPSHGTSASTSSTASKQKACDKYEPPKTSCSSYYSSHSHYSEAIADCIEFFNKSSQEGILDGRKSDAWV 123
+ QR+SFVIQVR + + + + P+ NFSAMKLFNRFRKILMRL+FS PS TS ASKQ++C++++PPKTSCSSYYSS+SHYSEAI+DCIEFFNKSSQEGILDGRKSD WV
Sbjct: 3 KPQRDSFVIQVRGSGIYSEALCNQPPRASKFNFSAMKLFNRFRKILMRLVFSSPS------TSGMASKQRSCERFDPPKTSCSSYYSSNSHYSEAISDCIEFFNKSSQEGILDGRKSDVWV 117
BLAST of CMJ_chr3_026570.1 vs. ExPASy TrEMBL
Match: A0A2K2BC83|A0A2K2BC83_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G023100 PE=4 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 2.896e-38 Identity = 62/86 (72.09%), Postives = 74/86 (86.05%), Query Frame = 0 Query: 38 MKLFNRFRKILMRLLFSFPSHGTSASTSSTASKQKACDKYEPPKTSCSSYYSSHSHYSEAIADCIEFFNKSSQEGILDGRKSDAWV 123
MK FNRF KIL RL+FS ++TS+ ASKQ++C++++PP+TSCSSYYSSH+HYSEAIADCIEFFNKSSQEGILDGRKSD WV
Sbjct: 1 MKFFNRFCKILTRLVFS------GSTTSNMASKQRSCERFDPPRTSCSSYYSSHTHYSEAIADCIEFFNKSSQEGILDGRKSDVWV 80
BLAST of CMJ_chr3_026570.1 vs. ExPASy TrEMBL
Match: A0A6A1UJQ7|A0A6A1UJQ7_9ROSI (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G024766 PE=4 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 2.971e-38 Identity = 85/120 (70.83%), Postives = 93/120 (77.50%), Query Frame = 0 Query: 11 ESFVIQVRA--ATDHQQEVPQNKT----LNFSAMKLFNRFRKILMRLLFSFPSHGTSASTSSTASKQKACDKYEPPKTSCSSYYSSHSHYSEAIADCIEFFNKSSQEGIL-DGRKSDAWV 123
ESFVIQVR A D Q Q NFSAMKLFNRFRKILMRLLFS PS G+SA++ TAS+QK CD++EPPKTSCSSYYSSHSHY+EAIADCIEFFNKSS + IL DGRKSD V
Sbjct: 9 ESFVIQVRGCEAVDRHQAPHQTSVDSSEFNFSAMKLFNRFRKILMRLLFSLPSRGSSAASGMTASRQKNCDRFEPPKTSCSSYYSSHSHYNEAIADCIEFFNKSSHDEILDDGRKSDVLV 128
BLAST of CMJ_chr3_026570.1 vs. ExPASy TrEMBL
Match: A0A6A1UVD7|A0A6A1UVD7_9ROSI (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G002767 PE=4 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 4.399e-37 Identity = 85/120 (70.83%), Postives = 93/120 (77.50%), Query Frame = 0 Query: 11 ESFVIQVRA--ATDHQQEVPQNKT----LNFSAMKLFNRFRKILMRLLFSFPSHGTSASTSSTASKQKACDKYEPPKTSCSSYYSSHSHYSEAIADCIEFFNKSSQEGIL-DGRKSDAWV 123
ESFVIQVR A D Q Q NFSAMKLFNRFRKILMRLLFS PS G+SA++ TAS+QK CD++EPPKTSCSSYYSSHSHY+EAIADCIEFFNKSS + IL DGRKSD V
Sbjct: 9 ESFVIQVRGCEAVDRHQAPHQTSVDSSEFNFSAMKLFNRFRKILMRLLFSLPSRGSSAASGMTASRQKNCDRFEPPKTSCSSYYSSHSHYNEAIADCIEFFNKSSHDEILDDGRKSDVLV 128
BLAST of CMJ_chr3_026570.1 vs. Araport11
Match: AT1G75717.1 (| hypothetical protein | Chr1:28433977-28434261 FORWARD LENGTH=94 | 201606) HSP 1 Score: 55.0694 bits (131), Expect = 7.593e-11 Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 0 Query: 38 MKLFNRFRKILMRLLFSFPSHGTSASTSSTASKQKACDKYEPPKTSCSSYYSSHSHYS-EAIADCIEFFNKSS 109
MKLF++ KILMRL+ F H +S S+ +++EPPK SCSS Y S + EAIADCIEFFNKSS
Sbjct: 1 MKLFHKLGKILMRLI-DFTLHSSSRRQKKNNSRSGDGERFEPPKISCSSSYYSSHVHYSEAIADCIEFFNKSS 72 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_026570.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_026570.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_026570.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_026570.1_cmj_v1 ID=CMJ_chr3_026570.1_cmj_v1; Name=CMJ_chr3_026570.1; organism=Citrus maxima; type=mRNA; length=372bpback to top protein sequence of CMJ_chr3_026570.1_cmj_v1 >CMJ_chr3_026570.1_cmj_v1 ID=CMJ_chr3_026570.1_cmj_v1; Name=CMJ_chr3_026570.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=124bpback to top mRNA from alignment at chr3:41292923..41293294+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=372bp; location=Sequence derived from: chr3:41292923..41293294+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:41292923..41293294+ >CMJ_chr3_026570.1_cmj_v1 ID=CMJ_chr3_026570.1_cmj_v1; Name=CMJ_chr3_026570.1; organism=Citrus maxima; type=CDS; length=372bp; location=Sequence derived from: chr3:41292923..41293294+ (Citrus maximaback to top |