CMJ_chr3_027780.1
|
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_027780.1 vs. ExPASy TrEMBL
Match: A0A6A3CVH5|A0A6A3CVH5_HIBSY (U-box domain-containing protein 15-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00002840pilonHSYRG01307 PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.539e-31 Identity = 69/115 (60.00%), Postives = 80/115 (69.57%), Query Frame = 0 Query: 14 PNCDHASSLFPQNDVYPGEATWETRTTPFLKTDVCATRRFVLDAPAISKLNAKATSSSMQNPTRVEVVSALISKCISAAFKEKSDSHHNPTLLTDAVNLRQRTKPSLAQRYMGNL 128
PN D AS +FPQN YP EAT TPFL+ +C T R V DA AI+ L AKATSSS +PTRVEVVSAL+SKCI AAFK KSD + TL+T AVNLRQR P + ++ MGN
Sbjct: 192 PNFD-ASCVFPQNVAYPREATLSALITPFLRKGICRTMRVVFDASAIASLKAKATSSSASDPTRVEVVSALLSKCIMAAFKTKSDIQKS-TLITHAVNLRQRAVPPIPKQSMGNF 304
BLAST of CMJ_chr3_027780.1 vs. ExPASy TrEMBL
Match: A0A067E8U7|A0A067E8U7_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g023048mg PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 1.430e-30 Identity = 69/125 (55.20%), Postives = 85/125 (68.00%), Query Frame = 0 Query: 4 KKLKACTCSNPNCDHASSLFPQNDVYPGEATWETRTTPFLKTDVCATRRFVLDAPAISKLNAKATSSSMQNPTRVEVVSALISKCISAAFKEKSDSHHNPTLLTDAVNLRQRTKPSLAQRYMGNL 128
K L+ C P+ D ASSLFP D YP EAT + + F KT TRRFV +A AI L AKATSSS+Q+PTRVEVVSA++SKCI A K K+ S H PTLLT AVNLR++ +P L+ +GN+
Sbjct: 21 KTLEEAVC-RPSFD-ASSLFPPRDAYPREATAKAQFARFKKTGRFVTRRFVFEAKAIVDLKAKATSSSVQHPTRVEVVSAILSKCIMTAVKTKTGS-HKPTLLTHAVNLRRKARPPLSAHLVGNI 142
BLAST of CMJ_chr3_027780.1 vs. ExPASy TrEMBL
Match: V4SXB7|V4SXB7_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10001125mg PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 2.387e-29 Identity = 69/125 (55.20%), Postives = 85/125 (68.00%), Query Frame = 0 Query: 4 KKLKACTCSNPNCDHASSLFPQNDVYPGEATWETRTTPFLKTDVCATRRFVLDAPAISKLNAKATSSSMQNPTRVEVVSALISKCISAAFKEKSDSHHNPTLLTDAVNLRQRTKPSLAQRYMGNL 128
K L+ C P+ D ASSLFP D YP EAT + + F KT TRRFV +A AI L AKATSSS+Q+PTRVEVVSA++SKCI A K K+ S H PTLLT AVNLR++ +P L+ +GN+
Sbjct: 184 KTLEEAVC-RPSFD-ASSLFPPRDAYPREATAKAQFARFKKTGRFVTRRFVFEAKAIVDLKAKATSSSVQHPTRVEVVSAILSKCIMTAVKTKTGS-HKPTLLTHAVNLRRKARPPLSAHLVGNI 305
BLAST of CMJ_chr3_027780.1 vs. ExPASy TrEMBL
Match: A0A061FD56|A0A061FD56_THECC (3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative OS=Theobroma cacao OX=3641 GN=TCM_034371 PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.757e-28 Identity = 62/115 (53.91%), Postives = 77/115 (66.96%), Query Frame = 0 Query: 14 PNCDHASSLFPQNDVYPGEATWETRTTPFLKTDVCATRRFVLDAPAISKLNAKATSSSMQNPTRVEVVSALISKCISAAFKEKSDSHHNPTLLTDAVNLRQRTKPSLAQRYMGNL 128
PN D AS +FPQ++ YP EAT TPFLKT +C +RR V DA AI+ L AK SSS+ +PTRVE VSAL+ KC+ A FK KSD PT++ AVNLR+R P + + MGN
Sbjct: 192 PNFD-ASFVFPQSEAYPKEATILALFTPFLKTGICWSRRIVFDASAIASLKAKTASSSVPDPTRVEAVSALLCKCLMATFKAKSD-FQKPTVINHAVNLRRRAVPPVPKNSMGNF 304
BLAST of CMJ_chr3_027780.1 vs. ExPASy TrEMBL
Match: A0A6J1ACR8|A0A6J1ACR8_9ROSI (vinorine synthase-like OS=Herrania umbratica OX=108875 GN=LOC110417107 PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 4.843e-28 Identity = 62/115 (53.91%), Postives = 78/115 (67.83%), Query Frame = 0 Query: 14 PNCDHASSLFPQNDVYPGEATWETRTTPFLKTDVCATRRFVLDAPAISKLNAKATSSSMQNPTRVEVVSALISKCISAAFKEKSDSHHNPTLLTDAVNLRQRTKPSLAQRYMGNL 128
PN D AS +FPQ++ YP EAT +PFLKT +C +RR V DA AI+ L AK TSSS+ +PTRVE VSAL+ KC+ A FK KSD PT++ AVNLR+R P + + MGN
Sbjct: 192 PNFD-ASFVFPQSEAYPKEATILALFSPFLKTGICWSRRIVFDASAIASLKAKTTSSSVPDPTRVEAVSALLCKCLMATFKAKSD-FQKPTVINHAVNLRRRAVPPVPKNSMGNF 304
BLAST of CMJ_chr3_027780.1 vs. ExPASy TrEMBL
Match: A0A7J9DFR6|A0A7J9DFR6_9ROSI (Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_022384 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 7.006e-28 Identity = 61/117 (52.14%), Postives = 75/117 (64.10%), Query Frame = 0 Query: 12 SNPNCDHASSLFPQNDVYPGEATWETRTTPFLKTDVCATRRFVLDAPAISKLNAKATSSSMQNPTRVEVVSALISKCISAAFKEKSDSHHNPTLLTDAVNLRQRTKPSLAQRYMGNL 128
+PN D AS +FPQ+ YP EAT +PFLK +C + R V DA AI L K SSS+++PTRVEVVSAL+ KCI A FK KS + TL+T AVNLRQR P ++ MGN
Sbjct: 129 GSPNFD-ASFVFPQSVAYPREATLSALFSPFLKKGICRSMRIVFDASAIDLLKVKTASSSVRDPTRVEVVSALLCKCIMATFKAKSGIQKS-TLITHAVNLRQRAVPQFSKHSMGNF 243
BLAST of CMJ_chr3_027780.1 vs. ExPASy TrEMBL
Match: A0A5J5PHJ9|A0A5J5PHJ9_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D11G305100v1 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 3.850e-27 Identity = 63/127 (49.61%), Postives = 79/127 (62.20%), Query Frame = 0 Query: 14 PNCDHASSLFPQNDVYPGEATWETRTTPFLKTDVCATRRFVLDAPAISKLNAKATSSSMQNPTRVEVVSALISKCISAAFKEKSDSHHNPTLLTDAVNLRQRTKPSLAQRYMGNLNGWRQQYVQVRE 140
PN D AS +FPQ+ YP +AT+ PF+K + +RR V DA AI+ L AK SSS+ PTRVEVVSAL+SKCI AA K KS+ + TL+T AVNLRQR +P + MGN V +E
Sbjct: 57 PNFD-ASFVFPQSVAYPRDATFLGMVNPFVKKGIWQSRRIVFDASAIASLKAKTASSSVPYPTRVEVVSALLSKCIMAASKAKSEIQKS-TLITHAVNLRQRARPQIPNYSMGNFVCLAAALVTAKE 181
BLAST of CMJ_chr3_027780.1 vs. ExPASy TrEMBL
Match: A0A5D2XCB1|A0A5D2XCB1_GOSMU (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A11G295000v1 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 4.598e-27 Identity = 63/118 (53.39%), Postives = 78/118 (66.10%), Query Frame = 0 Query: 11 CSNPNCDHASSLFPQNDVYPGEATWETRTTPFLKTDVCATRRFVLDAPAISKLNAKATSSSMQNPTRVEVVSALISKCISAAFKEKSDSHHNPTLLTDAVNLRQRTKPSLAQRYMGNL 128
CSN + AS +FPQ+ YP EAT+ PF+K + +RR V DA AI+ L AK SSS+ PTRVEVVSAL+SKCI AA K KSD + TL+T AVNLRQR +P + + MGN
Sbjct: 127 CSNFD---ASFVFPQSVAYPREATYLGMVNPFVKKGIWQSRRIVFDASAIASLKAKTASSSVPYPTRVEVVSALLSKCIMAASKAKSDIQKS-TLITHAVNLRQRARPQVPKHSMGNF 240
BLAST of CMJ_chr3_027780.1 vs. ExPASy TrEMBL
Match: A0A6A1UUR7|A0A6A1UUR7_9ROSI (Vinorine synthase OS=Morella rubra OX=262757 GN=CJ030_MR8G015391 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.699e-27 Identity = 65/122 (53.28%), Postives = 80/122 (65.57%), Query Frame = 0 Query: 7 KACTCSNPNCDHASSLFPQNDVYPGEATWETRTTPFLKTDVCATRRFVLDAPAISKLNAKATSSSMQNPTRVEVVSALISKCISAAFKEKSDSHHNPTLLTDAVNLRQRTKPSLAQRYMGNL 128
KAC PN + A S+F Q++ YP EAT TTPFL+ C TRR DA AI+ L A A+SSS++NPTRVEVVSAL+ KCI+AA + KS PT +T AVNLR R+ P+ MGNL
Sbjct: 181 KACHAVCPNFE-APSIFIQSEAYPKEATMMALTTPFLRFGKCTTRRIAFDASAIASLQANASSSSVRNPTRVEVVSALLWKCITAALQAKS-GIKRPTFITHAVNLRPRSIPAFTNCTMGNL 300
BLAST of CMJ_chr3_027780.1 vs. ExPASy TrEMBL
Match: A0A7J8RZS4|A0A7J8RZS4_GOSDV (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_028288 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 5.251e-27 Identity = 63/115 (54.78%), Postives = 76/115 (66.09%), Query Frame = 0 Query: 14 PNCDHASSLFPQNDVYPGEATWETRTTPFLKTDVCATRRFVLDAPAISKLNAKATSSSMQNPTRVEVVSALISKCISAAFKEKSDSHHNPTLLTDAVNLRQRTKPSLAQRYMGNL 128
PN D AS +FPQ+ YP EAT+ PF+K + +RR V DA AI+ L AK SSS+ PTRVEVVSAL+SKCI AA K KSD + TL+T AVNLRQR +P + MGN
Sbjct: 49 PNFD-ASFVFPQSVAYPREATFLGMLKPFVKKGIWQSRRIVFDASAIASLKAKTASSSVPYPTRVEVVSALLSKCIMAASKAKSDIQKS-TLITHAVNLRQRARPQIPNYSMGNF 161
BLAST of CMJ_chr3_027780.1 vs. Araport11
Match: AT3G26040.1 (| HXXXD-type acyl-transferase family protein | Chr3:9519741-9521069 FORWARD LENGTH=442 | 201606) HSP 1 Score: 62.003 bits (149), Expect = 6.654e-12 Identity = 37/111 (33.33%), Postives = 60/111 (54.05%), Query Frame = 0 Query: 22 LFPQNDVYPGEATWETRTTPFLKTDVCA----TRRFVLDAPAISKLNAKATSSSMQNPTRVEVVSALISKCISAAFKEKSDSHHNPTLLTDAVNLRQRTKPSLAQRYMGNL 128
+F ++P ET P ++ ++ ++RF+ D+ +I L AKA+S + PTRVE VSALI K A + S + P++L ++V+LR R P + +GNL
Sbjct: 182 VFDTVKIFPPGNFSETSPAPVVEPEIMMNQTLSKRFIFDSSSIQALQAKASSFEVNQPTRVEAVSALIWKSAMKATRTVSGTSK-PSILANSVSLRSRVSPPFTKNSIGNL 291
BLAST of CMJ_chr3_027780.1 vs. Araport11
Match: AT1G24420.2 (| HXXXD-type acyl-transferase family protein | Chr1:8656687-8657997 FORWARD LENGTH=436 | 201606) HSP 1 Score: 58.9214 bits (141), Expect = 7.784e-11 Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 0 Query: 48 CATRRFVLDAPAISKLNAKATSSSMQNPTRVEVVSALISKCISAAFKEKSDSHHNPTLLTDAVNLRQRTKPSLAQRYMGNL 128
C T+RFV DA I KL AKA+ + ++NPTRVE V+AL +C++ + S + ++L VNLR + SL + +GN+
Sbjct: 216 CVTKRFVFDASKIKKLRAKASRNLVKNPTRVEAVTALFWRCVTKVSRLSSLTPRT-SVLQILVNLRGKVD-SLCENTIGNM 294
BLAST of CMJ_chr3_027780.1 vs. Araport11
Match: AT1G24420.1 (| HXXXD-type acyl-transferase family protein | Chr1:8656687-8657997 FORWARD LENGTH=436 | 201606) HSP 1 Score: 58.9214 bits (141), Expect = 7.784e-11 Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 0 Query: 48 CATRRFVLDAPAISKLNAKATSSSMQNPTRVEVVSALISKCISAAFKEKSDSHHNPTLLTDAVNLRQRTKPSLAQRYMGNL 128
C T+RFV DA I KL AKA+ + ++NPTRVE V+AL +C++ + S + ++L VNLR + SL + +GN+
Sbjct: 216 CVTKRFVFDASKIKKLRAKASRNLVKNPTRVEAVTALFWRCVTKVSRLSSLTPRT-SVLQILVNLRGKVD-SLCENTIGNM 294 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_027780.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_027780.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_027780.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 3 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_027780.1_cmj_v1 ID=CMJ_chr3_027780.1_cmj_v1; Name=CMJ_chr3_027780.1; organism=Citrus maxima; type=mRNA; length=423bpback to top protein sequence of CMJ_chr3_027780.1_cmj_v1 >CMJ_chr3_027780.1_cmj_v1 ID=CMJ_chr3_027780.1_cmj_v1; Name=CMJ_chr3_027780.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=141bpback to top mRNA from alignment at chr3:41993490..41993912+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=423bp; location=Sequence derived from: chr3:41993490..41993912+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:41993490..41993912+ >CMJ_chr3_027780.1_cmj_v1 ID=CMJ_chr3_027780.1_cmj_v1; Name=CMJ_chr3_027780.1; organism=Citrus maxima; type=CDS; length=423bp; location=Sequence derived from: chr3:41993490..41993912+ (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|