CMJ_chr3_027840.2
|
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_027840.2 vs. ExPASy TrEMBL
Match: A0A2H5PA66|A0A2H5PA66_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_117710 PE=4 SV=1) HSP 1 Score: 402.519 bits (1033), Expect = 1.927e-141 Identity = 200/205 (97.56%), Postives = 202/205 (98.54%), Query Frame = 0 Query: 1 MSKIRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRPEYRSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRKKSEACSGEKTPYNLGVTVESAKRRDSKKLGSLRKSVTAAYSVERNEPRYMLRSMSKENKKPPLPLNSSAMATTEKKTVSRRAGKI 205
MSK+RTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRPEYRSISCELRALARMVQDEFGTN+TNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRKKSEACSGEKTPYNLGVTVE AKRRDSKKL SLRKSV AAYSVERNEPRYMLRSMSKENKKPPLPLNSSAMATTEKKTVSRRAGKI
Sbjct: 1 MSKMRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRPEYRSISCELRALARMVQDEFGTNETNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRKKSEACSGEKTPYNLGVTVEPAKRRDSKKLESLRKSVIAAYSVERNEPRYMLRSMSKENKKPPLPLNSSAMATTEKKTVSRRAGKI 205
BLAST of CMJ_chr3_027840.2 vs. ExPASy TrEMBL
Match: A0A067H2E0|A0A067H2E0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g041622mg PE=4 SV=1) HSP 1 Score: 402.134 bits (1032), Expect = 2.347e-141 Identity = 200/205 (97.56%), Postives = 201/205 (98.05%), Query Frame = 0 Query: 1 MSKIRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRPEYRSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRKKSEACSGEKTPYNLGVTVESAKRRDSKKLGSLRKSVTAAYSVERNEPRYMLRSMSKENKKPPLPLNSSAMATTEKKTVSRRAGKI 205
MSK+RTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFR EYRSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRKKSEACSGEKTPYNLGVTVE AKRRDSKKL SLRKSV AAYSVERNEPRYMLRSMSKENKKPPLPLNSSAMATTEKKTVSRRAGKI
Sbjct: 1 MSKMRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRAEYRSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRKKSEACSGEKTPYNLGVTVEPAKRRDSKKLESLRKSVIAAYSVERNEPRYMLRSMSKENKKPPLPLNSSAMATTEKKTVSRRAGKI 205
BLAST of CMJ_chr3_027840.2 vs. ExPASy TrEMBL
Match: V4SLE4|V4SLE4_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002509mg PE=4 SV=1) HSP 1 Score: 400.208 bits (1027), Expect = 1.178e-140 Identity = 199/205 (97.07%), Postives = 201/205 (98.05%), Query Frame = 0 Query: 1 MSKIRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRPEYRSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRKKSEACSGEKTPYNLGVTVESAKRRDSKKLGSLRKSVTAAYSVERNEPRYMLRSMSKENKKPPLPLNSSAMATTEKKTVSRRAGKI 205
MSK+RTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFR EYRSISCELRALARMVQDEFGTN+TNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRKKSEACSGEKTPYNLGVTVE AKRRDSKKL SLRKSV AAYSVERNEPRYMLRSMSKENKKPPLPLNSSAMATTEKKTVSRRAGKI
Sbjct: 1 MSKMRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRAEYRSISCELRALARMVQDEFGTNETNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRKKSEACSGEKTPYNLGVTVEPAKRRDSKKLESLRKSVIAAYSVERNEPRYMLRSMSKENKKPPLPLNSSAMATTEKKTVSRRAGKI 205
BLAST of CMJ_chr3_027840.2 vs. ExPASy TrEMBL
Match: A0A061FEX3|A0A061FEX3_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034382 PE=4 SV=1) HSP 1 Score: 287.73 bits (735), Expect = 4.830e-96 Identity = 150/212 (70.75%), Postives = 177/212 (83.49%), Query Frame = 0 Query: 1 MSKIRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRPEYRSISCELRALARMVQDEFGTNDTNKGGIGK-SLCANSSPLFERGRFYEEYAARRNERLKRKK-SEACSGEKTPYNLGVTVESAKRRDSKKLGSLRKSVTAAYSVERNE---PRYMLRSMSKENKKPPLPLNS--SAMATTEKKTVSRRAGKI 205
MSK+++DRKPPLAKSPIR RPRRVLRSNST+LQTPPGSLTKSQKPIR+W +EE++ RPEYRSISCELRALA+MV+DE G + K G G+ SL ANS+PLFERGRFY+EY+ARRNERLKRKK E K ++LGVTVES+KRRDSKKL SLRKSV+AAYS E NE PRYMLRSMSKENKKPPL +N+ S++ +E+KT +RR +I
Sbjct: 1 MSKMKSDRKPPLAKSPIRLRPRRVLRSNSTSLQTPPGSLTKSQKPIRTWAVEESEIRPEYRSISCELRALAKMVRDELGNGEPEKAGFGETSLSANSTPLFERGRFYDEYSARRNERLKRKKGGETGDDSKAGHHLGVTVESSKRRDSKKLSSLRKSVSAAYSAEMNETQTPRYMLRSMSKENKKPPLAVNNNKSSVIGSERKTGARRGKRI 212
BLAST of CMJ_chr3_027840.2 vs. ExPASy TrEMBL
Match: B9H5H3|B9H5H3_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G250800 PE=4 SV=1) HSP 1 Score: 286.189 bits (731), Expect = 1.888e-95 Identity = 147/208 (70.67%), Postives = 171/208 (82.21%), Query Frame = 0 Query: 1 MSKIRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRPEYRSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRKKSEACSGEKTPYNLGVTVESAKRRDSKKLGSLRKSVTAAYSVERNE-PRYMLRSMSKENKKPPLPLNS--SAMATTEKKTVSRRAGKI 205
MS++RTDRKPPLAKSPIR RPRRVLRS STTLQTPPGSLTKSQKP R D E++D RPEY SISCELRALA+MV+DEFG ++ GG+GKSL ANSSPLFERGRFYEEY+ARRN+RLKRKK + KTPYNLGVTVES+KRR ++KL S RKSV+ A VERNE PRY+LRSM+KENKKPPLP+ S ++ E+K +R+ KI
Sbjct: 1 MSRMRTDRKPPLAKSPIRIRPRRVLRSESTTLQTPPGSLTKSQKPNRKLDTEDSDLRPEYHSISCELRALAKMVRDEFGNGESTNGGVGKSLSANSSPLFERGRFYEEYSARRNDRLKRKKGDTGDDMKTPYNLGVTVESSKRRYTRKLESARKSVSDACLVERNETPRYLLRSMNKENKKPPLPVYSFEKSVLAGERKVAARKVRKI 208
BLAST of CMJ_chr3_027840.2 vs. ExPASy TrEMBL
Match: A0A6N2LDK5|A0A6N2LDK5_SALVM (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS213765 PE=4 SV=1) HSP 1 Score: 284.263 bits (726), Expect = 9.340e-95 Identity = 143/207 (69.08%), Postives = 168/207 (81.16%), Query Frame = 0 Query: 1 MSKIRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRPEYRSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRKKSEACSGEKTPYNLGVTVESAKRRDSKKLGSLRKSVTAAYSVERNE-PRYMLRSMSKENKKPPLPLNS--SAMATTEKKTVSRRAGK 204
MS++RTDRKPPLAKSPIR RPRRVLRS S LQTPPGSLTKSQKP R WD E++D RPEY SISC+LRALA+MV+DEFG + GG+ +SL ANSSPLFERGRFYEEY+ARRN+RLKRKK + KTPYNLGVTV+S KRRD++KL S RKSV+ AY VERNE PRY+LRSM+KENKKPPLP+ S ++ E+K +R+ K
Sbjct: 1 MSRMRTDRKPPLAKSPIRIRPRRVLRSESIALQTPPGSLTKSQKPNRKWDTEDSDLRPEYHSISCDLRALAKMVRDEFGNGELTNGGVSRSLSANSSPLFERGRFYEEYSARRNDRLKRKKGDTGDDVKTPYNLGVTVKSTKRRDTRKLESTRKSVSDAYLVERNETPRYLLRSMNKENKKPPLPVYSFEKSVLAGERKLATRKVRK 207
BLAST of CMJ_chr3_027840.2 vs. ExPASy TrEMBL
Match: A0A1R3KRJ4|A0A1R3KRJ4_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_05218 PE=4 SV=1) HSP 1 Score: 282.722 bits (722), Expect = 4.793e-94 Identity = 146/209 (69.86%), Postives = 171/209 (81.82%), Query Frame = 0 Query: 1 MSKIRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRPEYRSISCELRALARMVQDEFGTND-TNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRKKSEACSGEKTPYNLGVTVESAKRRDSKKLGSLRKSVTAAYSVERNEPRYMLRSMSKENKKPPLPLN---SSAMATTEKKTVSRRAGKI 205
MSK+++DRKPPLAKSPIR RPRRVLRSNS++LQTPPGSLTKSQKPIR W ME+++ RPEYRSISCEL+ALARMV+DE G + N G G SL ANS+P+FERGRFY+EY+ARRNERLKRKK E TP LGVTVES+K+R+SKKL SLRKS++AAYSVE PRY LRSMSKENKKPPL +N SS+ TE+KTV+ R +I
Sbjct: 1 MSKMKSDRKPPLAKSPIRLRPRRVLRSNSSSLQTPPGSLTKSQKPIRGWGMEDSEIRPEYRSISCELQALARMVKDELGNEEKENAGFCGTSLSANSTPVFERGRFYDEYSARRNERLKRKKGETGDDSNTPRRLGVTVESSKKRESKKLESLRKSMSAAYSVEFQTPRYQLRSMSKENKKPPLAVNTIKSSSAIGTERKTVATRTRRI 209
BLAST of CMJ_chr3_027840.2 vs. ExPASy TrEMBL
Match: A0A5N5MRP6|A0A5N5MRP6_9ROSI (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_008673 PE=4 SV=1) HSP 1 Score: 281.952 bits (720), Expect = 8.912e-94 Identity = 142/207 (68.60%), Postives = 166/207 (80.19%), Query Frame = 0 Query: 1 MSKIRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRPEYRSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRKKSEACSGEKTPYNLGVTVESAKRRDSKKLGSLRKSVTAAYSVERNE-PRYMLRSMSKENKKPPLPLNS--SAMATTEKKTVSRRAGK 204
MS++RTDRKPPLAKSPIR RPRRVLRS S QTPPGSLTKSQKP R WD E++D RPEY SISCELRALA+MV+DEFG + GG+ +SL ANSSPLFERGRFYEEY+ARRN+RLKRKK + KTPYNLGVTV+S KRRD++KL S RKSV+ AY ERNE PRY+LRSM+KENKKPPLP+ S ++ E+K +R+ K
Sbjct: 1 MSRMRTDRKPPLAKSPIRIRPRRVLRSESIAFQTPPGSLTKSQKPNRKWDTEDSDLRPEYHSISCELRALAKMVRDEFGNGEPTNGGVSRSLSANSSPLFERGRFYEEYSARRNDRLKRKKGDTGDDVKTPYNLGVTVKSTKRRDTRKLESTRKSVSDAYLAERNETPRYLLRSMNKENKKPPLPVYSFEKSVLAGERKVATRKVRK 207
BLAST of CMJ_chr3_027840.2 vs. ExPASy TrEMBL
Match: A0A4U5PZR3|A0A4U5PZR3_POPAL (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000151610 PE=4 SV=1) HSP 1 Score: 281.567 bits (719), Expect = 1.307e-93 Identity = 145/208 (69.71%), Postives = 169/208 (81.25%), Query Frame = 0 Query: 1 MSKIRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRPEYRSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRKKSEACSGEKTPYNLGVTVESAKRRDSKKLGSLRKSVTAAYSVERNE-PRYMLRSMSKENKKPPLPLNS--SAMATTEKKTVSRRAGKI 205
MS++RTDRKPPLAKSPIR RPRRVLRS ST LQTPPGSLTKSQKP R D E++D RPEY SISCELRALA+MV+DE G ++ GG+GKSL ANSSPLFERGRFYEEY+ARRN+RLKRKK + KTPYNLGVTVES+KRR ++KL S RKSV+ A VERNE PRY+LRSM+KENKKPPLP+ S ++ E+K +R+ KI
Sbjct: 1 MSRMRTDRKPPLAKSPIRIRPRRVLRSESTALQTPPGSLTKSQKPNRKLDTEDSDLRPEYHSISCELRALAKMVRDEVGNGESTNGGVGKSLSANSSPLFERGRFYEEYSARRNDRLKRKKGDTGDDVKTPYNLGVTVESSKRRYTRKLESARKSVSDACLVERNETPRYLLRSMNKENKKPPLPVYSFEKSVLAGERKVAARKVRKI 208
BLAST of CMJ_chr3_027840.2 vs. ExPASy TrEMBL
Match: A0A5C7H4K3|A0A5C7H4K3_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_021097 PE=4 SV=1) HSP 1 Score: 281.567 bits (719), Expect = 2.246e-93 Identity = 153/213 (71.83%), Postives = 167/213 (78.40%), Query Frame = 0 Query: 1 MSKIRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRPEYRSISCELRALARMVQDEFGTNDTNKG---GIGKSLCANSSP--LFERGRFYEEYAARRNERLKRKKSEACSGE--KTPYNLGVTVESAKRRD-SKKLGSLRKSVTAAYSVERNEPRYMLRSMSKENKKPPLPLNSSAMATTEKKTV--SRRAG 203
MS +R+DRKPPLAKSPIR RPRR LRSNS LQTPPGSLTKSQKPIRSWD+EE+D RPEYRSISCELRALA+ QD FG D N G SL ANSSP +FERGRFYEEY+ARRNERLKRKK KTPY+LGVTVES+K+RD S+KL SLRKSV+AAYSVER+EPRYMLRSMSKENKKPPLPLNS TT + RR G
Sbjct: 1 MSMMRSDRKPPLAKSPIRVRPRRDLRSNSNALQTPPGSLTKSQKPIRSWDVEESDLRPEYRSISCELRALAKTFQDGFGEVDANNKSVFGSTTSLSANSSPVSIFERGRFYEEYSARRNERLKRKKKSEMGDSLLKTPYSLGVTVESSKKRDSSRKLESLRKSVSAAYSVERSEPRYMLRSMSKENKKPPLPLNSERSTTTTTAAIGSQRRLG 213
BLAST of CMJ_chr3_027840.2 vs. Araport11
Match: AT5G42330.1 (| hypothetical protein | Chr5:16926672-16927370 FORWARD LENGTH=205 | 201606) HSP 1 Score: 162.155 bits (409), Expect = 3.722e-50 Identity = 111/215 (51.63%), Postives = 141/215 (65.58%), Query Frame = 0 Query: 1 MSKIRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTP-PGSLTKSQKPIRSWDMEETDFRPE--YRSISCELRALARMVQDEFGTN-DTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRKKS-EACSG---EKTPYNLGVTVE--SAKRRDSKKLGSLRKSVTAAYSVERNE-PRYMLRSMSKENKKPPLPLNSSAMATTEKKTVSRRAGK 204
MSK+R+ KPPL KSPIR R R+VL S +LQTP PG L KP R + + +P+ Y SIS E+ ALA+MV+DEF D K +SL NS PLFERGRFYEEY+A+RNERL+RKK EA G + TPYNLGV E + KRR + K S++K+V + VE + PRY LRSM+KEN+KPPLPLN +A + K+V+ R G+
Sbjct: 1 MSKMRSYLKPPLPKSPIRLRSRQVLHS---SLQTPSPGFL----KPGRRLSDVDLNPKPQIKYSSISSEIHALAKMVKDEFAEEEDRKKSSNLESLAKNSVPLFERGRFYEEYSAKRNERLRRKKGEEAVEGGVVKGTPYNLGVNHEPMTNKRRGTAKKESIKKTVVSM--VESSSIPRYSLRSMAKENRKPPLPLN---VAVSAMKSVTTRKGR 203 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_027840.2 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_027840.2 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_027840.2 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_027840.2_cmj_v1 ID=CMJ_chr3_027840.2_cmj_v1; Name=CMJ_chr3_027840.2; organism=Citrus maxima; type=mRNA; length=618bpback to top protein sequence of CMJ_chr3_027840.2_cmj_v1 >CMJ_chr3_027840.2_cmj_v1 ID=CMJ_chr3_027840.2_cmj_v1; Name=CMJ_chr3_027840.2_cmj_v1; organism=Citrus maxima; type=polypeptide; length=206bpback to top mRNA from alignment at chr3:42026113..42027295+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1183bp; location=Sequence derived from: chr3:42026113..42027295+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:42026113..42027295+ >CMJ_chr3_027840.2_cmj_v1 ID=CMJ_chr3_027840.2_cmj_v1; Name=CMJ_chr3_027840.2; organism=Citrus maxima; type=CDS; length=618bp; location=Sequence derived from: chr3:42026113..42027295+ (Citrus maximaback to top |