CMJ_chr3_028310.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_028310.1 vs. ExPASy TrEMBL
Match: V4V957|V4V957_CITCL (PsbP domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10001894mg PE=4 SV=1) HSP 1 Score: 258.07 bits (658), Expect = 1.174e-84 Identity = 130/157 (82.80%), Postives = 130/157 (82.80%), Query Frame = 0 Query: 27 EDLRVYTDELNKFEISIPQ---------------------------VSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDWFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 156
EDLRVYTDELNKFEISIPQ VSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDWFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Sbjct: 93 EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDWFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 249
BLAST of CMJ_chr3_028310.1 vs. ExPASy TrEMBL
Match: A0A067H2W1|A0A067H2W1_CITSI (PsbP domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g024710mg PE=4 SV=1) HSP 1 Score: 257.684 bits (657), Expect = 3.039e-84 Identity = 129/156 (82.69%), Postives = 129/156 (82.69%), Query Frame = 0 Query: 28 DLRVYTDELNKFEISIPQ---------------------------VSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDWFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 156
DLRVYTDELNKFEISIPQ VSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDWFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Sbjct: 103 DLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDWFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 258
BLAST of CMJ_chr3_028310.1 vs. ExPASy TrEMBL
Match: V4TAZ6|V4TAZ6_CITCL (PsbP domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10001894mg PE=4 SV=1) HSP 1 Score: 248.054 bits (632), Expect = 1.286e-81 Identity = 129/162 (79.63%), Postives = 129/162 (79.63%), Query Frame = 0 Query: 27 EDLRVYTDELNKFEISIPQ---------------------------VSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDW-----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 156
EDLRVYTDELNKFEISIPQ VSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Sbjct: 23 EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 184
BLAST of CMJ_chr3_028310.1 vs. ExPASy TrEMBL
Match: A0A067GZU6|A0A067GZU6_CITSI (PsbP domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g024710mg PE=4 SV=1) HSP 1 Score: 248.054 bits (632), Expect = 1.286e-81 Identity = 129/162 (79.63%), Postives = 129/162 (79.63%), Query Frame = 0 Query: 27 EDLRVYTDELNKFEISIPQ---------------------------VSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDW-----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 156
EDLRVYTDELNKFEISIPQ VSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Sbjct: 23 EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 184
BLAST of CMJ_chr3_028310.1 vs. ExPASy TrEMBL
Match: A0A067H085|A0A067H085_CITSI (PsbP domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g024710mg PE=4 SV=1) HSP 1 Score: 250.366 bits (638), Expect = 2.847e-81 Identity = 129/162 (79.63%), Postives = 129/162 (79.63%), Query Frame = 0 Query: 27 EDLRVYTDELNKFEISIPQ---------------------------VSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDW-----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 156
EDLRVYTDELNKFEISIPQ VSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Sbjct: 103 EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 264
BLAST of CMJ_chr3_028310.1 vs. ExPASy TrEMBL
Match: V4T686|V4T686_CITCL (PsbP domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10001894mg PE=4 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 5.214e-81 Identity = 129/162 (79.63%), Postives = 129/162 (79.63%), Query Frame = 0 Query: 27 EDLRVYTDELNKFEISIPQ---------------------------VSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDW-----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 156
EDLRVYTDELNKFEISIPQ VSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Sbjct: 93 EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 254
BLAST of CMJ_chr3_028310.1 vs. ExPASy TrEMBL
Match: A0A5D2W9V6|A0A5D2W9V6_GOSMU (PsbP domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D01G221600v1 PE=4 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 2.911e-73 Identity = 117/162 (72.22%), Postives = 125/162 (77.16%), Query Frame = 0 Query: 27 EDLRVYTDELNKFEISIPQ---------------------------VSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDW-----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 156
+D RVYTDE+NKF+I IPQ VSV ITGLGPDFTRMESFGKV+AFADTLVSGLDRSW+RPPGVAAKLID FYYIEYTLQNPGESR+HLFSAIGMASNGWYNRLYTVTGQFVEEE+EKYGS IEKAV+SFRFI
Sbjct: 91 QDFRVYTDEVNKFKIFIPQDWQVGAGEPNNFKSITAFYPEEEANSNVSVAITGLGPDFTRMESFGKVDAFADTLVSGLDRSWQRPPGVAAKLIDCKASNGFYYIEYTLQNPGESRRHLFSAIGMASNGWYNRLYTVTGQFVEEEAEKYGSRIEKAVSSFRFI 252
BLAST of CMJ_chr3_028310.1 vs. ExPASy TrEMBL
Match: A0A5D2DTL8|A0A5D2DTL8_GOSDA (PsbP domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_D01G231000v1 PE=4 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 2.911e-73 Identity = 117/162 (72.22%), Postives = 125/162 (77.16%), Query Frame = 0 Query: 27 EDLRVYTDELNKFEISIPQ---------------------------VSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDW-----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 156
+D RVYTDE+NKF+I IPQ VSV ITGLGPDFTRMESFGKV+AFADTLVSGLDRSW+RPPGVAAKLID FYYIEYTLQNPGESR+HLFSAIGMASNGWYNRLYTVTGQFVEEE+EKYGS IEKAV+SFRFI
Sbjct: 91 QDFRVYTDEVNKFKIFIPQDWQVGAGEPNNFKSITAFYPEEEANSNVSVAITGLGPDFTRMESFGKVDAFADTLVSGLDRSWQRPPGVAAKLIDCKASNGFYYIEYTLQNPGESRRHLFSAIGMASNGWYNRLYTVTGQFVEEEAEKYGSRIEKAVSSFRFI 252
BLAST of CMJ_chr3_028310.1 vs. ExPASy TrEMBL
Match: A0A5J5STY4|A0A5J5STY4_GOSBA (PsbP domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_D01G218100v1 PE=4 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 2.911e-73 Identity = 117/162 (72.22%), Postives = 125/162 (77.16%), Query Frame = 0 Query: 27 EDLRVYTDELNKFEISIPQ---------------------------VSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDW-----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 156
+D RVYTDE+NKF+I IPQ VSV ITGLGPDFTRMESFGKV+AFADTLVSGLDRSW+RPPGVAAKLID FYYIEYTLQNPGESR+HLFSAIGMASNGWYNRLYTVTGQFVEEE+EKYGS IEKAV+SFRFI
Sbjct: 91 QDFRVYTDEVNKFKIFIPQDWQVGAGEPNNFKSITAFYPEEEANSNVSVAITGLGPDFTRMESFGKVDAFADTLVSGLDRSWQRPPGVAAKLIDCKASNGFYYIEYTLQNPGESRRHLFSAIGMASNGWYNRLYTVTGQFVEEEAEKYGSRIEKAVSSFRFI 252
BLAST of CMJ_chr3_028310.1 vs. ExPASy TrEMBL
Match: A0A1U8KZC9|A0A1U8KZC9_GOSHI (psbP domain-containing protein 3, chloroplastic OS=Gossypium hirsutum OX=3635 GN=LOC107922286 PE=4 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 2.911e-73 Identity = 117/162 (72.22%), Postives = 125/162 (77.16%), Query Frame = 0 Query: 27 EDLRVYTDELNKFEISIPQ---------------------------VSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDW-----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 156
+D RVYTDE+NKF+I IPQ VSV ITGLGPDFTRMESFGKV+AFADTLVSGLDRSW+RPPGVAAKLID FYYIEYTLQNPGESR+HLFSAIGMASNGWYNRLYTVTGQFVEEE+EKYGS IEKAV+SFRFI
Sbjct: 91 QDFRVYTDEVNKFKIFIPQDWQVGAGEPNNFKSITAFYPEEEANSNVSVAITGLGPDFTRMESFGKVDAFADTLVSGLDRSWQRPPGVAAKLIDCKASNGFYYIEYTLQNPGESRRHLFSAIGMASNGWYNRLYTVTGQFVEEEAEKYGSRIEKAVSSFRFI 252
BLAST of CMJ_chr3_028310.1 vs. ExPASy Swiss-Prot
Match: PPD3_ARATH (PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD3 PE=1 SV=2) HSP 1 Score: 209.534 bits (532), Expect = 4.445e-68 Identity = 108/168 (64.29%), Postives = 119/168 (70.83%), Query Frame = 0 Query: 21 AFSNNKEDLRVYTDELNKFEISIPQ---------------------------VSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID-----WFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 156
A +N E RVYTDE NKFEISIPQ VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW++P GV AKLID FYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +EES + S I+K V SFRFI
Sbjct: 80 AETNASEAFRVYTDETNKFEISIPQDWQVGQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQSSKIQKTVKSFRFI 247
BLAST of CMJ_chr3_028310.1 vs. Araport11
Match: AT1G76450.1 (| Photosystem II reaction center PsbP family protein | Chr1:28684618-28686109 FORWARD LENGTH=247 | 201606) HSP 1 Score: 209.534 bits (532), Expect = 4.548e-69 Identity = 108/168 (64.29%), Postives = 119/168 (70.83%), Query Frame = 0 Query: 21 AFSNNKEDLRVYTDELNKFEISIPQ---------------------------VSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID-----WFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 156
A +N E RVYTDE NKFEISIPQ VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW++P GV AKLID FYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +EES + S I+K V SFRFI
Sbjct: 80 AETNASEAFRVYTDETNKFEISIPQDWQVGQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQSSKIQKTVKSFRFI 247 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_028310.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_028310.1 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 1 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_028310.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_028310.1_cmj_v1 ID=CMJ_chr3_028310.1_cmj_v1; Name=CMJ_chr3_028310.1; organism=Citrus maxima; type=mRNA; length=471bpback to top protein sequence of CMJ_chr3_028310.1_cmj_v1 >CMJ_chr3_028310.1_cmj_v1 ID=CMJ_chr3_028310.1_cmj_v1; Name=CMJ_chr3_028310.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=157bpback to top mRNA from alignment at chr3:42312270..42314177+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1908bp; location=Sequence derived from: chr3:42312270..42314177+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:42312270..42314177+ >CMJ_chr3_028310.1_cmj_v1 ID=CMJ_chr3_028310.1_cmj_v1; Name=CMJ_chr3_028310.1; organism=Citrus maxima; type=CDS; length=471bp; location=Sequence derived from: chr3:42312270..42314177+ (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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