CMJ_chr3_028540.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_028540.1 vs. ExPASy TrEMBL
Match: A0A2H5PAH3|A0A2H5PAH3_CITUN (DEAD domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_118500 PE=4 SV=1) HSP 1 Score: 349.747 bits (896), Expect = 1.143e-119 Identity = 168/171 (98.25%), Postives = 170/171 (99.42%), Query Frame = 0 Query: 1 MKAKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 MKAKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKN+GGSFNHSNYKIVYVAPMRALVAEVLVSTATLAWGVNLLARTVIIEGTQIYNP+KGAWTELSPLDIMRMLG AGRPQYDSYGEGIIITGHSELR Sbjct: 1 MKAKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNNGGSFNHSNYKIVYVAPMRALVAEVLVSTATLAWGVNLLARTVIIEGTQIYNPEKGAWTELSPLDIMRMLGCAGRPQYDSYGEGIIITGHSELR 171
BLAST of CMJ_chr3_028540.1 vs. ExPASy TrEMBL
Match: A0A067DX77|A0A067DX77_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0001142mg PE=4 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 2.319e-47 Identity = 86/103 (83.50%), Postives = 95/103 (92.23%), Query Frame = 0 Query: 1 MKAKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVL 103 MK KPLDP+EKLI ISEMPE A+PAFKGMTQLNRV+SRVY+SA SA+NILLCAPT GKTNV+VLTILQQLALN+ND GSFNHSNYKIVYVAPM+ALVAEV+ Sbjct: 373 MKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 475 HSP 2 Score: 141.739 bits (356), Expect = 3.702e-34 Identity = 65/71 (91.55%), Postives = 69/71 (97.18%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 +VLVSTATLAWGVNL A TVII+GTQIYNP+KGAWTELSPLDIM+MLGRAGRPQYDSYGEGIIITGHSELR Sbjct: 730 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 800
BLAST of CMJ_chr3_028540.1 vs. ExPASy TrEMBL
Match: A0A067DXM7|A0A067DXM7_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0001142mg PE=4 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 2.783e-47 Identity = 86/103 (83.50%), Postives = 95/103 (92.23%), Query Frame = 0 Query: 1 MKAKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVL 103 MK KPLDP+EKLI ISEMPE A+PAFKGMTQLNRV+SRVY+SA SA+NILLCAPT GKTNV+VLTILQQLALN+ND GSFNHSNYKIVYVAPM+ALVAEV+ Sbjct: 373 MKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 475 HSP 2 Score: 141.739 bits (356), Expect = 3.766e-34 Identity = 65/71 (91.55%), Postives = 69/71 (97.18%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 +VLVSTATLAWGVNL A TVII+GTQIYNP+KGAWTELSPLDIM+MLGRAGRPQYDSYGEGIIITGHSELR Sbjct: 730 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 800
BLAST of CMJ_chr3_028540.1 vs. ExPASy TrEMBL
Match: A0A2H5NWW2|A0A2H5NWW2_CITUN (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_083130 PE=4 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 2.831e-47 Identity = 86/103 (83.50%), Postives = 95/103 (92.23%), Query Frame = 0 Query: 1 MKAKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVL 103 MK KPLDP+EKLI ISEMPE A+PAFKGMTQLNRV+SRVY+SA SA+NILLCAPT GKTNV+VLTILQQLALN+ND GSFNHSNYKIVYVAPM+ALVAEV+ Sbjct: 486 MKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 588 HSP 2 Score: 141.739 bits (356), Expect = 3.943e-34 Identity = 65/71 (91.55%), Postives = 69/71 (97.18%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 +VLVSTATLAWGVNL A TVII+GTQIYNP+KGAWTELSPLDIM+MLGRAGRPQYDSYGEGIIITGHSELR Sbjct: 843 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 913
BLAST of CMJ_chr3_028540.1 vs. ExPASy TrEMBL
Match: A0A067E8P0|A0A067E8P0_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0001142mg PE=4 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 2.938e-47 Identity = 86/103 (83.50%), Postives = 95/103 (92.23%), Query Frame = 0 Query: 1 MKAKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVL 103 MK KPLDP+EKLI ISEMPE A+PAFKGMTQLNRV+SRVY+SA SA+NILLCAPT GKTNV+VLTILQQLALN+ND GSFNHSNYKIVYVAPM+ALVAEV+ Sbjct: 373 MKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 475 HSP 2 Score: 141.739 bits (356), Expect = 3.681e-34 Identity = 65/71 (91.55%), Postives = 69/71 (97.18%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 +VLVSTATLAWGVNL A TVII+GTQIYNP+KGAWTELSPLDIM+MLGRAGRPQYDSYGEGIIITGHSELR Sbjct: 730 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 800
BLAST of CMJ_chr3_028540.1 vs. ExPASy TrEMBL
Match: A0A2H5NX79|A0A2H5NX79_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_083130 PE=4 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 3.037e-47 Identity = 86/103 (83.50%), Postives = 95/103 (92.23%), Query Frame = 0 Query: 1 MKAKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVL 103 MK KPLDP+EKLI ISEMPE A+PAFKGMTQLNRV+SRVY+SA SA+NILLCAPT GKTNV+VLTILQQLALN+ND GSFNHSNYKIVYVAPM+ALVAEV+ Sbjct: 465 MKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 HSP 2 Score: 141.354 bits (355), Expect = 5.913e-34 Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 0 Query: 100 AEVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 VLVSTATLAWGVNL A TVII+GTQIYNP+KGAWTELSPLDIM+MLGRAGRPQYDSYGEGIIITGHSELR Sbjct: 819 GHVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 890
BLAST of CMJ_chr3_028540.1 vs. ExPASy TrEMBL
Match: A0A2H5NWV5|A0A2H5NWV5_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_083140 PE=4 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 3.100e-47 Identity = 86/103 (83.50%), Postives = 95/103 (92.23%), Query Frame = 0 Query: 1 MKAKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVL 103 MK KPLDP+EKLI ISEMPE A+PAFKGMTQLNRV+SRVY+SA SA+NILLCAPT GKTNV+VLTILQQLALN+ND GSFNHSNYKIVYVAPM+ALVAEV+ Sbjct: 486 MKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 588 HSP 2 Score: 141.739 bits (356), Expect = 3.702e-34 Identity = 65/71 (91.55%), Postives = 69/71 (97.18%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 +VLVSTATLAWGVNL A TVII+GTQIYNP+KGAWTELSPLDIM+MLGRAGRPQYDSYGEGIIITGHSELR Sbjct: 843 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 913
BLAST of CMJ_chr3_028540.1 vs. ExPASy TrEMBL
Match: A0A067E9M0|A0A067E9M0_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0001142mg PE=4 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 3.135e-47 Identity = 86/103 (83.50%), Postives = 95/103 (92.23%), Query Frame = 0 Query: 1 MKAKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVL 103 MK KPLDP+EKLI ISEMPE A+PAFKGMTQLNRV+SRVY+SA SA+NILLCAPT GKTNV+VLTILQQLALN+ND GSFNHSNYKIVYVAPM+ALVAEV+ Sbjct: 373 MKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 475 HSP 2 Score: 141.739 bits (356), Expect = 3.852e-34 Identity = 65/71 (91.55%), Postives = 69/71 (97.18%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 +VLVSTATLAWGVNL A TVII+GTQIYNP+KGAWTELSPLDIM+MLGRAGRPQYDSYGEGIIITGHSELR Sbjct: 730 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 800
BLAST of CMJ_chr3_028540.1 vs. ExPASy TrEMBL
Match: A0A2H5NWV8|A0A2H5NWV8_CITUN (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_083130 PE=4 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 3.478e-47 Identity = 86/103 (83.50%), Postives = 95/103 (92.23%), Query Frame = 0 Query: 1 MKAKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVL 103 MK KPLDP+EKLI ISEMPE A+PAFKGMTQLNRV+SRVY+SA SA+NILLCAPT GKTNV+VLTILQQLALN+ND GSFNHSNYKIVYVAPM+ALVAEV+ Sbjct: 465 MKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 HSP 2 Score: 141.354 bits (355), Expect = 6.388e-34 Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 0 Query: 100 AEVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 VLVSTATLAWGVNL A TVII+GTQIYNP+KGAWTELSPLDIM+MLGRAGRPQYDSYGEGIIITGHSELR Sbjct: 819 GHVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 890
BLAST of CMJ_chr3_028540.1 vs. ExPASy TrEMBL
Match: V4SMC9|V4SMC9_CITCL (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v100108901mg PE=4 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 3.535e-47 Identity = 86/103 (83.50%), Postives = 95/103 (92.23%), Query Frame = 0 Query: 1 MKAKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVL 103 MK KPLDP+EKLI ISEMPE A+PAFKGMTQLNRV+SRVY+SA SA+NILLCAPT GKTNV+VLTILQQLALN+ND GSFNHSNYKIVYVAPM+ALVAEV+ Sbjct: 486 MKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 588 HSP 2 Score: 141.739 bits (356), Expect = 4.555e-34 Identity = 65/71 (91.55%), Postives = 69/71 (97.18%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 +VLVSTATLAWGVNL A TVII+GTQIYNP+KGAWTELSPLDIM+MLGRAGRPQYDSYGEGIIITGHSELR Sbjct: 843 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 913
BLAST of CMJ_chr3_028540.1 vs. ExPASy Swiss-Prot
Match: DEXHD_ARATH (DExH-box ATP-dependent RNA helicase DExH13 OS=Arabidopsis thaliana OX=3702 GN=BRR2B PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.194e-40 Identity = 71/103 (68.93%), Postives = 86/103 (83.50%), Query Frame = 0 Query: 3 AKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVLVS 105 +K D +EKL+ IS++PE A+PAF+GM QLNRV+S+VY +A F A+NILLCAPT GKTNV+VLTIL QL LN N GG+FNH NYKIVYVAPM+ALVAEV+ S Sbjct: 477 SKKFDSNEKLVKISDLPEWAQPAFRGMQQLNRVQSKVYGTALFKADNILLCAPTGAGKTNVAVLTILHQLGLNMNPGGTFNHGNYKIVYVAPMKALVAEVVDS 579 HSP 2 Score: 122.865 bits (307), Expect = 3.866e-30 Identity = 53/71 (74.65%), Postives = 65/71 (91.55%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 +VL+STATLAWGVNL A TVII+GTQ+YNP++G W ELSPLD+M+M+GRAGRPQYD GEGIIITG+S+L+ Sbjct: 832 QVLISTATLAWGVNLPAHTVIIKGTQVYNPERGEWMELSPLDVMQMIGRAGRPQYDQQGEGIIITGYSKLQ 902
BLAST of CMJ_chr3_028540.1 vs. ExPASy Swiss-Prot
Match: DEXHC_ARATH (DExH-box ATP-dependent RNA helicase DExH12 OS=Arabidopsis thaliana OX=3702 GN=BRR2A PE=1 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 2.460e-39 Identity = 67/101 (66.34%), Postives = 87/101 (86.14%), Query Frame = 0 Query: 3 AKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVL 103 +K +D +EKL+ I+EMP+ A+PAFKGM QLNRV+S+VY++A F A NILLCAPT GKTNV++LTILQQL +N+N G++NH +YKIVYVAPM+ALVAEV+ Sbjct: 476 SKKVDRNEKLVKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFKAENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALVAEVV 576 HSP 2 Score: 130.183 bits (326), Expect = 1.067e-32 Identity = 58/71 (81.69%), Postives = 67/71 (94.37%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 +VLVSTATLAWGVNL A TVII+GTQ+YNP+KGAW ELSPLD+M+MLGRAGRPQYD +GEGIIITG+SEL+ Sbjct: 831 QVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITGYSELQ 901
BLAST of CMJ_chr3_028540.1 vs. ExPASy Swiss-Prot
Match: BRR2_SCHPO (Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=brr2 PE=1 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.893e-31 Identity = 55/71 (77.46%), Postives = 66/71 (92.96%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 +VLVSTATLAWGVNL A TVII+GTQ+Y+P+KG WTELSP D+++MLGRAGRPQ+D+YGEGIIIT HSEL+ Sbjct: 846 QVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIITAHSELQ 916 HSP 2 Score: 95.9005 bits (237), Expect = 7.090e-21 Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 0 Query: 6 LDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVL 103 L E+L+ I E+PE + AF LNR++S +Y AF + NILLCAPT GKTNV++L IL +L + + SFN N+KIVY+AP++ALV E++ Sbjct: 494 LGADERLVKIKELPEWSHQAFLNTQSLNRIQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMV 591
BLAST of CMJ_chr3_028540.1 vs. ExPASy Swiss-Prot
Match: U520_CAEEL (Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans OX=6239 GN=snrp-200 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 3.681e-30 Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 +VL STATLAWGVNL A TVII+GTQIYNP+KG WTEL LDIM+MLGRAGRPQYD GEGI+IT HSEL+ Sbjct: 800 QVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQ 870 HSP 2 Score: 106.686 bits (265), Expect = 1.473e-24 Identity = 49/105 (46.67%), Postives = 76/105 (72.38%), Query Frame = 0 Query: 1 MKAKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVLVS 105 +K +P EKL+++SE+P+ A+PAF G LNR++SR+ +SA S ++LLCAPT GKTNV++LT+LQ++ + + GS +KIVY+APM++LV E++ S Sbjct: 444 LKPRPFAEGEKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGS 548
BLAST of CMJ_chr3_028540.1 vs. ExPASy Swiss-Prot
Match: U520_DROME (Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster OX=7227 GN=l(3)72Ab PE=2 SV=4) HSP 1 Score: 122.479 bits (306), Expect = 4.762e-30 Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELRL 172 +VLVSTATLAWGVNL A TVII+GTQ+YNP+KG W ELS LD+++MLGRAGRPQYD+ GEGI+IT HSEL+ Sbjct: 807 QVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQF 878 HSP 2 Score: 105.145 bits (261), Expect = 4.778e-24 Identity = 44/103 (42.72%), Postives = 76/103 (73.79%), Query Frame = 0 Query: 1 MKAKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVL 103 +K P D +E+L + ++P+ +P F+G LNR++SR+Y++A S N+LLCAPT GKTNV++LT+++++ + N+ G+ N ++KI+YVAPM++LV E++ Sbjct: 450 LKPVPFDANEELQPVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQEMV 552
BLAST of CMJ_chr3_028540.1 vs. ExPASy Swiss-Prot
Match: U520_HUMAN (U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens OX=9606 GN=SNRNP200 PE=1 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 7.860e-29 Identity = 53/71 (74.65%), Postives = 63/71 (88.73%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 +VLVSTATLAWGVNL A TVII+GTQ+Y+P+KG WTEL LDI++MLGRAGRPQYD+ GEGI+IT H EL+ Sbjct: 807 QVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQ 877 HSP 2 Score: 98.5969 bits (244), Expect = 7.248e-22 Identity = 42/105 (40.00%), Postives = 74/105 (70.48%), Query Frame = 0 Query: 1 MKAKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVLVS 105 +K KP E+L+ + ++P+ A+ F+G LNR++S++Y +A + N+LLCAPT GKTNV+++ +L+++ + N G+ N ++KI+Y+APMR+LV E++ S Sbjct: 450 LKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGS 554
BLAST of CMJ_chr3_028540.1 vs. ExPASy Swiss-Prot
Match: U520_MOUSE (U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Mus musculus OX=10090 GN=Snrnp200 PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 8.402e-29 Identity = 53/71 (74.65%), Postives = 63/71 (88.73%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 +VLVSTATLAWGVNL A TVII+GTQ+Y+P+KG WTEL LDI++MLGRAGRPQYD+ GEGI+IT H EL+ Sbjct: 807 QVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQ 877 HSP 2 Score: 98.5969 bits (244), Expect = 7.745e-22 Identity = 42/105 (40.00%), Postives = 74/105 (70.48%), Query Frame = 0 Query: 1 MKAKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVLVS 105 +K KP E+L+ + ++P+ A+ F+G LNR++S++Y +A + N+LLCAPT GKTNV+++ +L+++ + N G+ N ++KI+Y+APMR+LV E++ S Sbjct: 450 LKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGS 554
BLAST of CMJ_chr3_028540.1 vs. ExPASy Swiss-Prot
Match: U520_RAT (U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Rattus norvegicus OX=10116 GN=Snrnp200 PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 8.403e-29 Identity = 53/71 (74.65%), Postives = 63/71 (88.73%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 +VLVSTATLAWGVNL A TVII+GTQ+Y+P+KG WTEL LDI++MLGRAGRPQYD+ GEGI+IT H EL+ Sbjct: 807 QVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQ 877 HSP 2 Score: 98.5969 bits (244), Expect = 7.746e-22 Identity = 42/105 (40.00%), Postives = 74/105 (70.48%), Query Frame = 0 Query: 1 MKAKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVLVS 105 +K KP E+L+ + ++P+ A+ F+G LNR++S++Y +A + N+LLCAPT GKTNV+++ +L+++ + N G+ N ++KI+Y+APMR+LV E++ S Sbjct: 450 LKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGS 554
BLAST of CMJ_chr3_028540.1 vs. ExPASy Swiss-Prot
Match: HELCL_DICDI (Activating signal cointegrator 1 complex subunit 3-like OS=Dictyostelium discoideum OX=44689 GN=ascc3l PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.487e-26 Identity = 52/72 (72.22%), Postives = 60/72 (83.33%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELRL 172 +VL+STATLAWGVNL A TVII+GTQIYNP+KG W ELSPLD+ +MLGRAGRP +D GEGIIIT EL+ Sbjct: 877 QVLISTATLAWGVNLPAHTVIIKGTQIYNPEKG-WCELSPLDVTQMLGRAGRPPFDKEGEGIIITSQHELQF 947 HSP 2 Score: 99.7525 bits (247), Expect = 3.227e-22 Identity = 47/102 (46.08%), Postives = 76/102 (74.51%), Query Frame = 0 Query: 5 PLDPSEKLINISEMPERAKPAFK--GMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKN-DGGSFNHSNYKIVYVAPMRALVAEVL 103 P +P+E+LI+I E+PE ++ F+ G+ LNRV+S++++ AF + NN+LL APT +GKTNV++LTIL ++ N++ D G +KIVY+APM++LV E++ Sbjct: 523 PFNPNERLISIEELPEWSRLPFEESGVKSLNRVQSKLFDCAFKTDNNLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSLVQEMV 624
BLAST of CMJ_chr3_028540.1 vs. ExPASy Swiss-Prot
Match: BRR2_YEAST (Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BRR2 PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 3.693e-26 Identity = 47/71 (66.20%), Postives = 62/71 (87.32%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 +VLV TATLAWGVNL A TVII+GT +Y+P+KG+W +LSP D+++MLGRAGRP+YD++GEGIIIT S ++ Sbjct: 826 QVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIITDQSNVQ 896 HSP 2 Score: 76.2554 bits (186), Expect = 3.199e-14 Identity = 42/102 (41.18%), Postives = 68/102 (66.67%), Query Frame = 0 Query: 3 AKPLDPSEKLINISEMPERAKPAFKG--MTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKN-DGGSFNHSNYKIVYVAPMRALVAE 101 +KP+ E L I+ +P+ + AF T LN ++S+V+ +AF +N+L+CAPT +GKTN+++LT+L+ L+ + N N S +KIVY+AP++ALV E Sbjct: 469 SKPVIDYE-LKEITSLPDWCQEAFPSSETTSLNPIQSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKALVQE 569
BLAST of CMJ_chr3_028540.1 vs. Araport11
Match: AT2G42270.1 (| U5 small nuclear ribonucleoprotein helicase | Chr2:17604330-17610848 FORWARD LENGTH=2172 | 201606) HSP 1 Score: 152.525 bits (384), Expect = 2.245e-41 Identity = 71/103 (68.93%), Postives = 86/103 (83.50%), Query Frame = 0 Query: 3 AKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVLVS 105 +K D +EKL+ IS++PE A+PAF+GM QLNRV+S+VY +A F A+NILLCAPT GKTNV+VLTIL QL LN N GG+FNH NYKIVYVAPM+ALVAEV+ S Sbjct: 477 SKKFDSNEKLVKISDLPEWAQPAFRGMQQLNRVQSKVYGTALFKADNILLCAPTGAGKTNVAVLTILHQLGLNMNPGGTFNHGNYKIVYVAPMKALVAEVVDS 579 HSP 2 Score: 122.865 bits (307), Expect = 3.955e-31 Identity = 53/71 (74.65%), Postives = 65/71 (91.55%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 +VL+STATLAWGVNL A TVII+GTQ+YNP++G W ELSPLD+M+M+GRAGRPQYD GEGIIITG+S+L+ Sbjct: 832 QVLISTATLAWGVNLPAHTVIIKGTQVYNPERGEWMELSPLDVMQMIGRAGRPQYDQQGEGIIITGYSKLQ 902
BLAST of CMJ_chr3_028540.1 vs. Araport11
Match: AT1G20960.2 (| U5 small nuclear ribonucleoprotein helicase | Chr1:7302591-7309914 REVERSE LENGTH=2171 | 201606) HSP 1 Score: 149.443 bits (376), Expect = 2.517e-40 Identity = 67/101 (66.34%), Postives = 87/101 (86.14%), Query Frame = 0 Query: 3 AKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVL 103 +K +D +EKL+ I+EMP+ A+PAFKGM QLNRV+S+VY++A F A NILLCAPT GKTNV++LTILQQL +N+N G++NH +YKIVYVAPM+ALVAEV+ Sbjct: 476 SKKVDRNEKLVKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFKAENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALVAEVV 576 HSP 2 Score: 130.183 bits (326), Expect = 1.091e-33 Identity = 58/71 (81.69%), Postives = 67/71 (94.37%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 +VLVSTATLAWGVNL A TVII+GTQ+YNP+KGAW ELSPLD+M+MLGRAGRPQYD +GEGIIITG+SEL+ Sbjct: 831 QVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITGYSELQ 901
BLAST of CMJ_chr3_028540.1 vs. Araport11
Match: AT1G20960.1 (| U5 small nuclear ribonucleoprotein helicase | Chr1:7302591-7309914 REVERSE LENGTH=2171 | 201606) HSP 1 Score: 149.443 bits (376), Expect = 2.517e-40 Identity = 67/101 (66.34%), Postives = 87/101 (86.14%), Query Frame = 0 Query: 3 AKPLDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSNYKIVYVAPMRALVAEVL 103 +K +D +EKL+ I+EMP+ A+PAFKGM QLNRV+S+VY++A F A NILLCAPT GKTNV++LTILQQL +N+N G++NH +YKIVYVAPM+ALVAEV+ Sbjct: 476 SKKVDRNEKLVKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFKAENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALVAEVV 576 HSP 2 Score: 130.183 bits (326), Expect = 1.091e-33 Identity = 58/71 (81.69%), Postives = 67/71 (94.37%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELR 171 +VLVSTATLAWGVNL A TVII+GTQ+YNP+KGAW ELSPLD+M+MLGRAGRPQYD +GEGIIITG+SEL+ Sbjct: 831 QVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITGYSELQ 901
BLAST of CMJ_chr3_028540.1 vs. Araport11
Match: AT5G61140.2 (| U5 small nuclear ribonucleoprotein helicase | Chr5:24589999-24603311 FORWARD LENGTH=2157 | 201606) HSP 1 Score: 102.834 bits (255), Expect = 3.109e-24 Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSEL 170 +VLV TATLAWGVNL A TV+I+GTQ+Y+ K G W +L LD+M++ GRAGRPQ+D GEGIIIT H +L Sbjct: 834 KVLVCTATLAWGVNLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKL 903 HSP 2 Score: 98.5969 bits (244), Expect = 8.394e-23 Identity = 45/98 (45.92%), Postives = 70/98 (71.43%), Query Frame = 0 Query: 6 LDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSN-YKIVYVAPMRALVAEV 102 + P EKLI I E+ + A+ AF G LNR++SR++++ + + NIL+CAPT GKTN++++++L ++ + DG + H N +KIVYVAPM+AL AEV Sbjct: 482 MKPGEKLIEIKELDDFAQAAFHGYKSLNRIQSRIFQTVYHTNENILVCAPTGAGKTNIAMISVLHEIKQHFRDG--YLHKNEFKIVYVAPMKALAAEV 577 HSP 3 Score: 76.2554 bits (186), Expect = 3.272e-15 Identity = 32/64 (50.00%), Postives = 49/64 (76.56%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIII 164 +VLVST+TLAWGVNL A VII+GT+ ++ K + + +I++M+GRAGRPQ+D +G+ +I+ Sbjct: 1670 QVLVSTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTEILQMMGRAGRPQFDQHGKAVIL 1733
BLAST of CMJ_chr3_028540.1 vs. Araport11
Match: AT5G61140.1 (| U5 small nuclear ribonucleoprotein helicase | Chr5:24589999-24603311 FORWARD LENGTH=2146 | 201606) HSP 1 Score: 102.449 bits (254), Expect = 3.353e-24 Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSEL 170 +VLV TATLAWGVNL A TV+I+GTQ+Y+ K G W +L LD+M++ GRAGRPQ+D GEGIIIT H +L Sbjct: 834 KVLVCTATLAWGVNLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKL 903 HSP 2 Score: 98.2117 bits (243), Expect = 9.050e-23 Identity = 45/98 (45.92%), Postives = 70/98 (71.43%), Query Frame = 0 Query: 6 LDPSEKLINISEMPERAKPAFKGMTQLNRVRSRVYESAFFSANNILLCAPTKTGKTNVSVLTILQQLALNKNDGGSFNHSN-YKIVYVAPMRALVAEV 102 + P EKLI I E+ + A+ AF G LNR++SR++++ + + NIL+CAPT GKTN++++++L ++ + DG + H N +KIVYVAPM+AL AEV Sbjct: 482 MKPGEKLIEIKELDDFAQAAFHGYKSLNRIQSRIFQTVYHTNENILVCAPTGAGKTNIAMISVLHEIKQHFRDG--YLHKNEFKIVYVAPMKALAAEV 577 HSP 3 Score: 75.8702 bits (185), Expect = 3.395e-15 Identity = 32/64 (50.00%), Postives = 49/64 (76.56%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIII 164 +VLVST+TLAWGVNL A VII+GT+ ++ K + + +I++M+GRAGRPQ+D +G+ +I+ Sbjct: 1659 QVLVSTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTEILQMMGRAGRPQFDQHGKAVIL 1722
BLAST of CMJ_chr3_028540.1 vs. Araport11
Match: AT3G27730.5 (| DNA helicase ROCK-N-ROLLERS | Chr3:10273391-10280213 REVERSE LENGTH=1143 | 201606) HSP 1 Score: 65.0846 bits (157), Expect = 1.584e-11 Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELRLLQVMVD 178 +V+ +T TLA G+NL A TV+I+ TQ +N +KG + E +++M GRAGRP +D G II+T + L + +++ Sbjct: 362 QVICTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQMSGRAGRPPFDDTGMVIIMTRRETVHLYENLLN 439
BLAST of CMJ_chr3_028540.1 vs. Araport11
Match: AT3G27730.4 (| DNA helicase ROCK-N-ROLLERS | Chr3:10273391-10280213 REVERSE LENGTH=1143 | 201606) HSP 1 Score: 65.0846 bits (157), Expect = 1.584e-11 Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELRLLQVMVD 178 +V+ +T TLA G+NL A TV+I+ TQ +N +KG + E +++M GRAGRP +D G II+T + L + +++ Sbjct: 362 QVICTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQMSGRAGRPPFDDTGMVIIMTRRETVHLYENLLN 439
BLAST of CMJ_chr3_028540.1 vs. Araport11
Match: AT3G27730.3 (| DNA helicase ROCK-N-ROLLERS | Chr3:10273391-10280213 REVERSE LENGTH=1143 | 201606) HSP 1 Score: 65.0846 bits (157), Expect = 1.584e-11 Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELRLLQVMVD 178 +V+ +T TLA G+NL A TV+I+ TQ +N +KG + E +++M GRAGRP +D G II+T + L + +++ Sbjct: 362 QVICTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQMSGRAGRPPFDDTGMVIIMTRRETVHLYENLLN 439
BLAST of CMJ_chr3_028540.1 vs. Araport11
Match: AT3G27730.2 (| DNA helicase ROCK-N-ROLLERS | Chr3:10273391-10280213 REVERSE LENGTH=1143 | 201606) HSP 1 Score: 65.0846 bits (157), Expect = 1.584e-11 Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELRLLQVMVD 178 +V+ +T TLA G+NL A TV+I+ TQ +N +KG + E +++M GRAGRP +D G II+T + L + +++ Sbjct: 362 QVICTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQMSGRAGRPPFDDTGMVIIMTRRETVHLYENLLN 439
BLAST of CMJ_chr3_028540.1 vs. Araport11
Match: AT3G27730.7 (| DNA helicase ROCK-N-ROLLERS | Chr3:10273952-10280213 REVERSE LENGTH=1133 | 201606) HSP 1 Score: 65.0846 bits (157), Expect = 1.610e-11 Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 0 Query: 101 EVLVSTATLAWGVNLLARTVIIEGTQIYNPKKGAWTELSPLDIMRMLGRAGRPQYDSYGEGIIITGHSELRLLQVMVD 178 +V+ +T TLA G+NL A TV+I+ TQ +N +KG + E +++M GRAGRP +D G II+T + L + +++ Sbjct: 362 QVICTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQMSGRAGRPPFDDTGMVIIMTRRETVHLYENLLN 439 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_028540.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_028540.1 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_028540.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_028540.1_cmj_v1 ID=CMJ_chr3_028540.1_cmj_v1; Name=CMJ_chr3_028540.1; organism=Citrus maxima; type=mRNA; length=825bpback to top protein sequence of CMJ_chr3_028540.1_cmj_v1 >CMJ_chr3_028540.1_cmj_v1 ID=CMJ_chr3_028540.1_cmj_v1; Name=CMJ_chr3_028540.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=275bpback to top mRNA from alignment at chr3:42410241..42413819- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=3579bp; location=Sequence derived from: chr3:42410241..42413819- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:42410241..42413819- >CMJ_chr3_028540.1_cmj_v1 ID=CMJ_chr3_028540.1_cmj_v1; Name=CMJ_chr3_028540.1; organism=Citrus maxima; type=CDS; length=825bp; location=Sequence derived from: chr3:42410241..42413819- (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|