CMJ_chr4_017010.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr4_017010.1 vs. ExPASy TrEMBL
Match: A0A1S8ADP5|A0A1S8ADP5_CITLI (Uncharacterized protein OS=Citrus limon OX=2708 PE=4 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.631e-75 Identity = 124/131 (94.66%), Postives = 127/131 (96.95%), Query Frame = 0 Query: 1 MGKRNEEAGGGGEIGEAGRGVWNGTEFRIHLQEMKFDDVQIRVTRKELTITERGSMNLITSSRLPRTASSHFSPFMQNGFLVLRFDRVSFAKKIWNVLVGGATLAGAFFGCVNDVQGFAGDPQRSPDYQRN 131 MGKRNEEAGGGGEIGEA GVWNG EFRIHLQE+KFDDVQIRVTR+ELTITERGSMNLITSSRLPRTASSHFSPFMQNGFLVLRFDRVSFAKKIWNVLVGG TLAGAFFGCV+DVQGFAGDPQRSPDYQRN Sbjct: 1 MGKRNEEAGGGGEIGEARCGVWNGREFRIHLQEIKFDDVQIRVTRRELTITERGSMNLITSSRLPRTASSHFSPFMQNGFLVLRFDRVSFAKKIWNVLVGGVTLAGAFFGCVSDVQGFAGDPQRSPDYQRN 131
BLAST of CMJ_chr4_017010.1 vs. ExPASy TrEMBL
Match: A0A2H5N3H5|A0A2H5N3H5_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_287010 PE=4 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 1.104e-42 Identity = 78/133 (58.65%), Postives = 97/133 (72.93%), Query Frame = 0 Query: 1 MGKRNEEAGGG-GEIGEAGRGVWNGTEFRIHLQEMKFDDVQIRVTRK-ELTITERGSMNLITSSRLPRTASSHFSPFMQNGFLVLRFDRVSFAKKIWNVLVGGATLAGAFFGCVNDVQGFAGDPQRSPDYQRN 131 M + NE+AGGG G EAG GVW G EFRIHLQ K DVQ+R+ RK EL ITER SM+LIT S+LP+ S+ F+ FM++GFLV+ F+R+SF +K+W VL+GGA L GA FGCV DV FA D QRS + + N Sbjct: 1 MAENNEKAGGGSGGKDEAG-GVWKGPEFRIHLQGKKIGDVQVRIVRKKELLITERDSMDLITRSKLPKRVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGALFGCVTDVDSFA-DRQRSANDEGN 131
BLAST of CMJ_chr4_017010.1 vs. ExPASy TrEMBL
Match: A0A2H5PDM4|A0A2H5PDM4_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_126950 PE=4 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 4.664e-37 Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = 0 Query: 21 VWNGTEFRIHLQEMKFDDVQIRVTRK-ELTITERGSMNLITSSRLPRTASSHFSPFMQNGFLVLRFDRVSFAKKIWNVLVGGATLAGAFFGCVNDVQGFAGDPQRSPDYQRN 131 VW G EFRIHLQ K DVQ+R+ RK EL ITER SM+LIT S+LP+ S+ F+ FM++GFLV+ F+R+SF +K+W VL+GGA L GA FGCV DV+ A D QRS + + N Sbjct: 21 VWKGPEFRIHLQGKKIGDVQVRIVRKKELLITERDSMDLITRSKLPKRVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGAVFGCVTDVESMA-DRQRSGNDEVN 131
BLAST of CMJ_chr4_017010.1 vs. ExPASy TrEMBL
Match: A0A067F712|A0A067F712_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040900mg PE=4 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 4.664e-37 Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = 0 Query: 21 VWNGTEFRIHLQEMKFDDVQIRVTRK-ELTITERGSMNLITSSRLPRTASSHFSPFMQNGFLVLRFDRVSFAKKIWNVLVGGATLAGAFFGCVNDVQGFAGDPQRSPDYQRN 131 VW G EFRIHLQ K DVQ+R+ RK EL ITER SM+LIT S+LP+ S+ F+ FM++GFLV+ F+R+SF +K+W VL+GGA L GA FGCV DV+ A D QRS + + N Sbjct: 21 VWKGPEFRIHLQGKKIGDVQVRIVRKKELLITERDSMDLITRSKLPKRVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGAVFGCVTDVESMA-DRQRSGNDEVN 131 The following BLAST results are available for this feature:
BLAST of CMJ_chr4_017010.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 4 Position : 0 Zoom : x 1
BLAST of CMJ_chr4_017010.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr4_017010.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr4_017010.1_cmj_v1 ID=CMJ_chr4_017010.1_cmj_v1; Name=CMJ_chr4_017010.1; organism=Citrus maxima; type=mRNA; length=396bpback to top protein sequence of CMJ_chr4_017010.1_cmj_v1 >CMJ_chr4_017010.1_cmj_v1 ID=CMJ_chr4_017010.1_cmj_v1; Name=CMJ_chr4_017010.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=132bpback to top mRNA from alignment at chr4:27908779..27909433- Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=655bp; location=Sequence derived from: chr4:27908779..27909433- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr4:27908779..27909433- >CMJ_chr4_017010.1_cmj_v1 ID=CMJ_chr4_017010.1_cmj_v1; Name=CMJ_chr4_017010.1; organism=Citrus maxima; type=CDS; length=396bp; location=Sequence derived from: chr4:27908779..27909433- (Citrus maximaback to top |