CMJ_chr4_017020.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr4_017020.1 vs. ExPASy TrEMBL
Match: A0A2H5N3H5|A0A2H5N3H5_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_287010 PE=4 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 3.811e-45 Identity = 79/118 (66.95%), Postives = 94/118 (79.66%), Query Frame = 0 Query: 7 AGVWKGTEFRIHLMGKKNDEVDVRVARKKEPIVSDRGSGNLIAHSKLPRRVGTGFTRAVEDGFLVVIFDRLSFGRKIWEVLLGEAILVGAIFGCVNDVDSFADRQR---DQKN-DDGQ 120
GVWKG EFRIHL GKK +V VR+ RKKE ++++R S +LI SKLP+RV T FT ++DGFLVV F+RLSFGRK+W+VLLG AILVGA+FGCV DVDSFADRQR D+ N DDGQ
Sbjct: 19 GGVWKGPEFRIHLQGKKIGDVQVRIVRKKELLITERDSMDLITRSKLPKRVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGALFGCVTDVDSFADRQRSANDEGNIDDGQ 136
BLAST of CMJ_chr4_017020.1 vs. ExPASy TrEMBL
Match: A0A2H5PDM4|A0A2H5PDM4_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_126950 PE=4 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 3.208e-43 Identity = 76/116 (65.52%), Postives = 92/116 (79.31%), Query Frame = 0 Query: 9 VWKGTEFRIHLMGKKNDEVDVRVARKKEPIVSDRGSGNLIAHSKLPRRVGTGFTRAVEDGFLVVIFDRLSFGRKIWEVLLGEAILVGAIFGCVNDVDSFADRQR---DQKN-DDGQ 120
VWKG EFRIHL GKK +V VR+ RKKE ++++R S +LI SKLP+RV T FT ++DGFLVV F+RLSFGRK+W+VLLG AILVGA+FGCV DV+S ADRQR D+ N DDGQ
Sbjct: 21 VWKGPEFRIHLQGKKIGDVQVRIVRKKELLITERDSMDLITRSKLPKRVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGAVFGCVTDVESMADRQRSGNDEVNIDDGQ 136
BLAST of CMJ_chr4_017020.1 vs. ExPASy TrEMBL
Match: A0A067F712|A0A067F712_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040900mg PE=4 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 3.208e-43 Identity = 76/116 (65.52%), Postives = 92/116 (79.31%), Query Frame = 0 Query: 9 VWKGTEFRIHLMGKKNDEVDVRVARKKEPIVSDRGSGNLIAHSKLPRRVGTGFTRAVEDGFLVVIFDRLSFGRKIWEVLLGEAILVGAIFGCVNDVDSFADRQR---DQKN-DDGQ 120
VWKG EFRIHL GKK +V VR+ RKKE ++++R S +LI SKLP+RV T FT ++DGFLVV F+RLSFGRK+W+VLLG AILVGA+FGCV DV+S ADRQR D+ N DDGQ
Sbjct: 21 VWKGPEFRIHLQGKKIGDVQVRIVRKKELLITERDSMDLITRSKLPKRVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGAVFGCVTDVESMADRQRSGNDEVNIDDGQ 136
BLAST of CMJ_chr4_017020.1 vs. ExPASy TrEMBL
Match: A0A1S8ADP5|A0A1S8ADP5_CITLI (Uncharacterized protein OS=Citrus limon OX=2708 PE=4 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.937e-29 Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 0 Query: 7 AGVWKGTEFRIHLMGKKNDEVDVRVARKKEPIVSDRGSGNLIAHSKLPRRVGTGFTRAVEDGFLVVIFDRLSFGRKIWEVLLGEAILVGAIFGCVNDVDSFA-DRQRD 113
GVW G EFRIHL K D+V +RV R+ E +++RGS NLI S+LPR + F+ +++GFLV+ FDR+SF +KIW VL+G L GA FGCV+DV FA D QR
Sbjct: 19 CGVWNGREFRIHLQEIKFDDVQIRVTRR-ELTITERGSMNLITSSRLPRTASSHFSPFMQNGFLVLRFDRVSFAKKIWNVLVGGVTLAGAFFGCVSDVQGFAGDPQRS 125 The following BLAST results are available for this feature:
BLAST of CMJ_chr4_017020.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 4 Position : 0 Zoom : x 1
BLAST of CMJ_chr4_017020.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr4_017020.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr4_017020.1_cmj_v1 ID=CMJ_chr4_017020.1_cmj_v1; Name=CMJ_chr4_017020.1; organism=Citrus maxima; type=mRNA; length=363bpback to top protein sequence of CMJ_chr4_017020.1_cmj_v1 >CMJ_chr4_017020.1_cmj_v1 ID=CMJ_chr4_017020.1_cmj_v1; Name=CMJ_chr4_017020.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=121bpback to top mRNA from alignment at chr4:27936566..27936928- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=363bp; location=Sequence derived from: chr4:27936566..27936928- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr4:27936566..27936928- >CMJ_chr4_017020.1_cmj_v1 ID=CMJ_chr4_017020.1_cmj_v1; Name=CMJ_chr4_017020.1; organism=Citrus maxima; type=CDS; length=363bp; location=Sequence derived from: chr4:27936566..27936928- (Citrus maximaback to top |