CMJ_chr4_017030.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr4_017030.1 vs. ExPASy TrEMBL
Match: A0A2H5N3H5|A0A2H5N3H5_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_287010 PE=4 SV=1) HSP 1 Score: 246.899 bits (629), Expect = 3.937e-82 Identity = 123/136 (90.44%), Postives = 127/136 (93.38%), Query Frame = 0 Query: 1 MAENNEKAGGGGGGKDEAGSVWKGPEFRIHLQGKKIGDVQVRIVRKKELLITEGDSRDFITRSKLPRTVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGALFGCVTDVETMADRQRSGNDKVNIDDGQ 136 MAENNEKAGGG GGKDEAG VWKGPEFRIHLQGKKIGDVQVRIVRKKELLITE DS D ITRSKLP+ VSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGALFGCVTDV++ ADRQRS ND+ NIDDGQ Sbjct: 1 MAENNEKAGGGSGGKDEAGGVWKGPEFRIHLQGKKIGDVQVRIVRKKELLITERDSMDLITRSKLPKRVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGALFGCVTDVDSFADRQRSANDEGNIDDGQ 136
BLAST of CMJ_chr4_017030.1 vs. ExPASy TrEMBL
Match: A0A2H5PDM4|A0A2H5PDM4_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_126950 PE=4 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 8.858e-74 Identity = 127/136 (93.38%), Postives = 131/136 (96.32%), Query Frame = 0 Query: 1 MAENNEKAGGGGGGKDEAGSVWKGPEFRIHLQGKKIGDVQVRIVRKKELLITEGDSRDFITRSKLPRTVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGALFGCVTDVETMADRQRSGNDKVNIDDGQ 136 MAENNEKAGGGGGGKDEAG VWKGPEFRIHLQGKKIGDVQVRIVRKKELLITE DS D ITRSKLP+ VSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGA+FGCVTDVE+MADRQRSGND+VNIDDGQ Sbjct: 1 MAENNEKAGGGGGGKDEAGGVWKGPEFRIHLQGKKIGDVQVRIVRKKELLITERDSMDLITRSKLPKRVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGAVFGCVTDVESMADRQRSGNDEVNIDDGQ 136
BLAST of CMJ_chr4_017030.1 vs. ExPASy TrEMBL
Match: A0A067F712|A0A067F712_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040900mg PE=4 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 8.858e-74 Identity = 127/136 (93.38%), Postives = 131/136 (96.32%), Query Frame = 0 Query: 1 MAENNEKAGGGGGGKDEAGSVWKGPEFRIHLQGKKIGDVQVRIVRKKELLITEGDSRDFITRSKLPRTVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGALFGCVTDVETMADRQRSGNDKVNIDDGQ 136 MAENNEKAGGGGGGKDEAG VWKGPEFRIHLQGKKIGDVQVRIVRKKELLITE DS D ITRSKLP+ VSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGA+FGCVTDVE+MADRQRSGND+VNIDDGQ Sbjct: 1 MAENNEKAGGGGGGKDEAGGVWKGPEFRIHLQGKKIGDVQVRIVRKKELLITERDSMDLITRSKLPKRVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGAVFGCVTDVESMADRQRSGNDEVNIDDGQ 136
BLAST of CMJ_chr4_017030.1 vs. ExPASy TrEMBL
Match: A0A1S8ADP5|A0A1S8ADP5_CITLI (Uncharacterized protein OS=Citrus limon OX=2708 PE=4 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 5.667e-34 Identity = 62/112 (55.36%), Postives = 81/112 (72.32%), Query Frame = 0 Query: 21 VWKGPEFRIHLQGKKIGDVQVRIVRKKELLITEGDSRDFITRSKLPRTVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGALFGCVTDVETMA-DRQRSGNDKVN 131 VW G EFRIHLQ K DVQ+R+ R+ EL ITE S + IT S+LPRT S+ F+ FM++GFLV+ F+R+SF +K+W VL+GG L GA FGCV+DV+ A D QRS + + N Sbjct: 21 VWNGREFRIHLQEIKFDDVQIRVTRR-ELTITERGSMNLITSSRLPRTASSHFSPFMQNGFLVLRFDRVSFAKKIWNVLVGGVTLAGAFFGCVSDVQGFAGDPQRSPDYQRN 131 The following BLAST results are available for this feature:
BLAST of CMJ_chr4_017030.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 4 Position : 0 Zoom : x 1
BLAST of CMJ_chr4_017030.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr4_017030.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr4_017030.1_cmj_v1 ID=CMJ_chr4_017030.1_cmj_v1; Name=CMJ_chr4_017030.1; organism=Citrus maxima; type=mRNA; length=411bpback to top protein sequence of CMJ_chr4_017030.1_cmj_v1 >CMJ_chr4_017030.1_cmj_v1 ID=CMJ_chr4_017030.1_cmj_v1; Name=CMJ_chr4_017030.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=137bpback to top mRNA from alignment at chr4:28026110..28026520- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=411bp; location=Sequence derived from: chr4:28026110..28026520- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr4:28026110..28026520- >CMJ_chr4_017030.1_cmj_v1 ID=CMJ_chr4_017030.1_cmj_v1; Name=CMJ_chr4_017030.1; organism=Citrus maxima; type=CDS; length=411bp; location=Sequence derived from: chr4:28026110..28026520- (Citrus maximaback to top |