CMJ_chr4_017070.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr4_017070.1 vs. ExPASy TrEMBL
Match: A0A2H5N3H5|A0A2H5N3H5_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_287010 PE=4 SV=1) HSP 1 Score: 268.47 bits (685), Expect = 1.050e-90 Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = 0 Query: 1 MAENNEKADGGGGGKDEAGGVWKGPEFRIHLQGKKIGDVQVRIVRKKELLITERDSMDLITRSKLPKRVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGALFGCVTDVDSFADRQRSANDEGNIDDGQ 136
MAENNEKA GG GGKDEAGGVWKGPEFRIHLQGKKIGDVQVRIVRKKELLITERDSMDLITRSKLPKRVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGALFGCVTDVDSFADRQRSANDEGNIDDGQ
Sbjct: 1 MAENNEKAGGGSGGKDEAGGVWKGPEFRIHLQGKKIGDVQVRIVRKKELLITERDSMDLITRSKLPKRVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGALFGCVTDVDSFADRQRSANDEGNIDDGQ 136
BLAST of CMJ_chr4_017070.1 vs. ExPASy TrEMBL
Match: A0A2H5PDM4|A0A2H5PDM4_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_126950 PE=4 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 1.530e-75 Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = 0 Query: 1 MAENNEKADGGGGGKDEAGGVWKGPEFRIHLQGKKIGDVQVRIVRKKELLITERDSMDLITRSKLPKRVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGALFGCVTDVDSFADRQRSANDEGNIDDGQ 136
MAENNEKA GGGGGKDEAGGVWKGPEFRIHLQGKKIGDVQVRIVRKKELLITERDSMDLITRSKLPKRVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGA+FGCVTDV+S ADRQRS NDE NIDDGQ
Sbjct: 1 MAENNEKAGGGGGGKDEAGGVWKGPEFRIHLQGKKIGDVQVRIVRKKELLITERDSMDLITRSKLPKRVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGAVFGCVTDVESMADRQRSGNDEVNIDDGQ 136
BLAST of CMJ_chr4_017070.1 vs. ExPASy TrEMBL
Match: A0A067F712|A0A067F712_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040900mg PE=4 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 1.530e-75 Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = 0 Query: 1 MAENNEKADGGGGGKDEAGGVWKGPEFRIHLQGKKIGDVQVRIVRKKELLITERDSMDLITRSKLPKRVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGALFGCVTDVDSFADRQRSANDEGNIDDGQ 136
MAENNEKA GGGGGKDEAGGVWKGPEFRIHLQGKKIGDVQVRIVRKKELLITERDSMDLITRSKLPKRVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGA+FGCVTDV+S ADRQRS NDE NIDDGQ
Sbjct: 1 MAENNEKAGGGGGGKDEAGGVWKGPEFRIHLQGKKIGDVQVRIVRKKELLITERDSMDLITRSKLPKRVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGAVFGCVTDVESMADRQRSGNDEVNIDDGQ 136
BLAST of CMJ_chr4_017070.1 vs. ExPASy TrEMBL
Match: A0A1S8ADP5|A0A1S8ADP5_CITLI (Uncharacterized protein OS=Citrus limon OX=2708 PE=4 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 2.353e-37 Identity = 65/113 (57.52%), Postives = 84/113 (74.34%), Query Frame = 0 Query: 20 GVWKGPEFRIHLQGKKIGDVQVRIVRKKELLITERDSMDLITRSKLPKRVSTKFTHFMKDGFLVVSFERLSFGRKVWKVLLGGAILVGALFGCVTDVDSFA-DRQRSANDEGN 131
GVW G EFRIHLQ K DVQ+R+ R+ EL ITER SM+LIT S+LP+ S+ F+ FM++GFLV+ F+R+SF +K+W VL+GG L GA FGCV+DV FA D QRS + + N
Sbjct: 20 GVWNGREFRIHLQEIKFDDVQIRVTRR-ELTITERGSMNLITSSRLPRTASSHFSPFMQNGFLVLRFDRVSFAKKIWNVLVGGVTLAGAFFGCVSDVQGFAGDPQRSPDYQRN 131 The following BLAST results are available for this feature:
BLAST of CMJ_chr4_017070.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 4 Position : 0 Zoom : x 1
BLAST of CMJ_chr4_017070.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr4_017070.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr4_017070.1_cmj_v1 ID=CMJ_chr4_017070.1_cmj_v1; Name=CMJ_chr4_017070.1; organism=Citrus maxima; type=mRNA; length=411bpback to top protein sequence of CMJ_chr4_017070.1_cmj_v1 >CMJ_chr4_017070.1_cmj_v1 ID=CMJ_chr4_017070.1_cmj_v1; Name=CMJ_chr4_017070.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=137bpback to top mRNA from alignment at chr4:28139153..28139932- Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=780bp; location=Sequence derived from: chr4:28139153..28139932- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr4:28139153..28139932- >CMJ_chr4_017070.1_cmj_v1 ID=CMJ_chr4_017070.1_cmj_v1; Name=CMJ_chr4_017070.1; organism=Citrus maxima; type=CDS; length=411bp; location=Sequence derived from: chr4:28139153..28139932- (Citrus maximaback to top |