CMJ_chr5_001320.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr5_001320.1 vs. ExPASy TrEMBL
Match: A0A067HB49|A0A067HB49_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035543mg PE=4 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 4.356e-60 Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0 Query: 1 MVGVFRRSLSFPNKHPNHPPMSHHIGSISLPCRSHPLVSHIKDEVSELKTWSAKPDNRTSSWLCDGLSHLKDVHDSLHEILHLPQTQDSLRNQHEWVD 98
MVGVF RSLSFPNKHPN PPMSHHI SISLPCRSHPLVS IKDE+SELKTWS KPDNRTSSWLCDGLS LKDVHDSLHEILHLPQTQDSLRNQHEWV+
Sbjct: 1 MVGVFGRSLSFPNKHPNRPPMSHHIRSISLPCRSHPLVSQIKDEISELKTWSTKPDNRTSSWLCDGLSRLKDVHDSLHEILHLPQTQDSLRNQHEWVE 98
BLAST of CMJ_chr5_001320.1 vs. ExPASy TrEMBL
Match: V4TFS0|V4TFS0_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003381mg PE=4 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 5.474e-60 Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0 Query: 1 MVGVFRRSLSFPNKHPNHPPMSHHIGSISLPCRSHPLVSHIKDEVSELKTWSAKPDNRTSSWLCDGLSHLKDVHDSLHEILHLPQTQDSLRNQHEWVD 98
MVGVF RSLSFPNKHPN PPMSHHI SISLPCRSHPLVS IKDE+SELKTWS KPDNRTSSWLCDGLS LKDVHDSLHEILHLPQTQDSLRNQHEWV+
Sbjct: 1 MVGVFGRSLSFPNKHPNRPPMSHHIRSISLPCRSHPLVSQIKDEISELKTWSTKPDNRTSSWLCDGLSRLKDVHDSLHEILHLPQTQDSLRNQHEWVE 98
BLAST of CMJ_chr5_001320.1 vs. ExPASy TrEMBL
Match: A0A2H5PA60|A0A2H5PA60_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_117580 PE=4 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 1.425e-59 Identity = 89/98 (90.82%), Postives = 92/98 (93.88%), Query Frame = 0 Query: 1 MVGVFRRSLSFPNKHPNHPPMSHHIGSISLPCRSHPLVSHIKDEVSELKTWSAKPDNRTSSWLCDGLSHLKDVHDSLHEILHLPQTQDSLRNQHEWVD 98
MVGVF RSLSFPNKHPN PPMSHHI SISLPCRSHPLVS IKDE+S+LKTWS KPDNRTSSWLCDGLS LKDVHDSLHEILHLPQTQDSLRNQHEWV+
Sbjct: 1 MVGVFGRSLSFPNKHPNRPPMSHHIRSISLPCRSHPLVSQIKDEISDLKTWSTKPDNRTSSWLCDGLSRLKDVHDSLHEILHLPQTQDSLRNQHEWVE 98
BLAST of CMJ_chr5_001320.1 vs. ExPASy TrEMBL
Match: V4UQP5|V4UQP5_CITCL (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10010657mg PE=4 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 8.690e-57 Identity = 88/96 (91.67%), Postives = 90/96 (93.75%), Query Frame = 0 Query: 1 MVGVFRRSLSFPNKHPNHPPMSHHIGSISLPCRSHPLVSHIKDEVSELKTWSAKPDNRTSSWLCDGLSHLKDVHDSLHEILHLPQTQDSLRNQHEW 96
MVGVFRRSLSFPNKHPNHPPMSHHI SISLPCRSHPLVSHIKDE+SELKTW KPDN TSSWLCDGLS LKDVHDS HEILHLPQTQDSLRNQH+W
Sbjct: 1 MVGVFRRSLSFPNKHPNHPPMSHHIRSISLPCRSHPLVSHIKDEISELKTWYTKPDNITSSWLCDGLSRLKDVHDSPHEILHLPQTQDSLRNQHKW 96
BLAST of CMJ_chr5_001320.1 vs. ExPASy TrEMBL
Match: A0A2H5QFF7|A0A2H5QFF7_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_224590 PE=4 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 3.277e-56 Identity = 90/114 (78.95%), Postives = 94/114 (82.46%), Query Frame = 0 Query: 1 MVGVFRRSLSFPNKHPNHPPMSHHIGSISLPCRSHPLVSHIKDEVSELKTWSAKPDNRTSSWLCDGLSHLKDVHDSLHEILHLPQTQDSLRNQHEWVDYKQITSVKKARQDLST 114
MVGVFRRSLSFPNKHPNHPPMSHHI SISLPCRSHPLVSHIKDE+SELKTW KPDN TSSWLCDGLS LKDVHDS HEILHLPQTQDSLRNQH + + K DL+
Sbjct: 1 MVGVFRRSLSFPNKHPNHPPMSHHIRSISLPCRSHPLVSHIKDEISELKTWYTKPDNITSSWLCDGLSRLKDVHDSPHEILHLPQTQDSLRNQHNIRFFSSSLTHKAQSGDLAA 114
BLAST of CMJ_chr5_001320.1 vs. ExPASy TrEMBL
Match: A0A067DY73|A0A067DY73_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044771mg PE=4 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 1.157e-55 Identity = 86/97 (88.66%), Postives = 89/97 (91.75%), Query Frame = 0 Query: 1 MVGVFRRSLSFPNKHPNHPPMSHHIGSISLPCRSHPLVSHIKDEVSELKTWSAKPDNRTSSWLCDGLSHLKDVHDSLHEILHLPQTQDSLRNQHEWV 97
MVGVFRRSLSFPNKHPNHPPMSHHI SISLPCRSHPLVS IKDE+SELKTW KPDN TSSWLCDGLS LKDVHDS HEILHLPQTQDSLRNQH++
Sbjct: 1 MVGVFRRSLSFPNKHPNHPPMSHHIRSISLPCRSHPLVSQIKDEISELKTWYTKPDNITSSWLCDGLSRLKDVHDSPHEILHLPQTQDSLRNQHKFF 97
BLAST of CMJ_chr5_001320.1 vs. ExPASy TrEMBL
Match: A0A5C7H4R2|A0A5C7H4R2_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_021110 PE=4 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 2.591e-50 Identity = 79/101 (78.22%), Postives = 89/101 (88.12%), Query Frame = 0 Query: 1 MVGVFRRSLSFPNKHPNHP---PMSHHIGSISLPCRSHPLVSHIKDEVSELKTWSAKPDNRTSSWLCDGLSHLKDVHDSLHEILHLPQTQDSLRNQHEWVD 98
MVGVFRRSLSFPNKHPN P P+SHHI SISLPCRSHPL+S IK EV++LK+WS K +NRTS+WLCDGLS LKDVHDSL +IL LPQTQDSLRNQ+EWV+
Sbjct: 1 MVGVFRRSLSFPNKHPNRPSKPPISHHIRSISLPCRSHPLISQIKCEVNDLKSWSTKSENRTSTWLCDGLSRLKDVHDSLVDILQLPQTQDSLRNQNEWVE 101
BLAST of CMJ_chr5_001320.1 vs. ExPASy TrEMBL
Match: A0A6J1AE71|A0A6J1AE71_9ROSI (uncharacterized protein LOC110417085 OS=Herrania umbratica OX=108875 GN=LOC110417085 PE=4 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 5.070e-48 Identity = 74/101 (73.27%), Postives = 86/101 (85.15%), Query Frame = 0 Query: 1 MVGVFRRSLSFPNKHPNHP---PMSHHIGSISLPCRSHPLVSHIKDEVSELKTWSAKPDNRTSSWLCDGLSHLKDVHDSLHEILHLPQTQDSLRNQHEWVD 98
MVGVFRRSLSFPNK PN P P+SHHI SISLPCRSHPL+S +KDE++ELKTWS +PDNRTS+WLCDGLS LKDVHD+LH+IL LPQT + L + EWV+
Sbjct: 1 MVGVFRRSLSFPNKTPNRPSKPPISHHIRSISLPCRSHPLISQLKDEITELKTWSCRPDNRTSAWLCDGLSRLKDVHDALHDILQLPQTHELLSQKREWVE 101
BLAST of CMJ_chr5_001320.1 vs. ExPASy TrEMBL
Match: A0A061FEV4|A0A061FEV4_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034360 PE=4 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 3.430e-46 Identity = 79/129 (61.24%), Postives = 95/129 (73.64%), Query Frame = 0 Query: 1 MVGVFRRSLSFPNKHPNHP---PMSHHIGSISLPCRSHPLVSHIKDEVSELKTWSAKPDNRTSSWLCDGLSHLKDVHDSLHEILHLPQTQDSLRNQHEWV-----DYKQITSVKKARQDLSTGIKNHIL 121
MVGVFRRSLSFPNK PN P P+SHHI SISLPC SHPL+S +KDE++ELKTWS +PDNRTS+WLCDGLS LKDVHD+LH+IL LPQT++ L ++ EWV D+ + V Q S +K L
Sbjct: 110 MVGVFRRSLSFPNKTPNRPSKPPISHHIRSISLPCGSHPLISQLKDEITELKTWSCRPDNRTSAWLCDGLSRLKDVHDALHDILQLPQTRELLSHKREWVEKLLEDFLRFVDVYGIFQTSSLALKEEQL 238
BLAST of CMJ_chr5_001320.1 vs. ExPASy TrEMBL
Match: A0A6P6ANW6|A0A6P6ANW6_DURZI (uncharacterized protein LOC111311433 OS=Durio zibethinus OX=66656 GN=LOC111311433 PE=4 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 4.944e-46 Identity = 72/101 (71.29%), Postives = 85/101 (84.16%), Query Frame = 0 Query: 1 MVGVFRRSLSFPNK---HPNHPPMSHHIGSISLPCRSHPLVSHIKDEVSELKTWSAKPDNRTSSWLCDGLSHLKDVHDSLHEILHLPQTQDSLRNQHEWVD 98
MVGVFRRSLSFPNK P+ PP+SHHI SISLPCRSHPL+S +KDE++ELKTWS PDNRTS+WLCDGLS LKDVHDS H+IL LPQT + + ++ EWV+
Sbjct: 1 MVGVFRRSLSFPNKTPSRPSKPPISHHIRSISLPCRSHPLISQLKDEITELKTWSTNPDNRTSAWLCDGLSRLKDVHDSFHDILQLPQTHELVSHKREWVE 101
BLAST of CMJ_chr5_001320.1 vs. Araport11
Match: AT1G76240.1 (| DUF241 domain protein (DUF241) | Chr1:28602949-28603875 REVERSE LENGTH=308 | 201606) HSP 1 Score: 119.398 bits (298), Expect = 1.149e-33 Identity = 59/102 (57.84%), Postives = 77/102 (75.49%), Query Frame = 0 Query: 1 MVGVFRRSLSFPNKH------PNHPPMSHHIGSISLPCRSHPLVSHIKDEVSELKTW---SAKPDNRTSSWLCDGLSHLKDVHDSLHEILHLPQTQDSLRNQ 93
MVGVFRRSLSFPNK + P +SHH SISLPCRSHPL+SH+ E+S+LK+W + + +RT+SW+ DGLS LKDV ++L +IL LPQ+Q+SLRN+
Sbjct: 1 MVGVFRRSLSFPNKPCGRSSPSSKPRVSHHTRSISLPCRSHPLISHVNHEISQLKSWFSFAGETHSRTTSWITDGLSLLKDVQETLADILQLPQSQESLRNR 102 The following BLAST results are available for this feature:
BLAST of CMJ_chr5_001320.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr5_001320.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr5_001320.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr5_001320.1_cmj_v1 ID=CMJ_chr5_001320.1_cmj_v1; Name=CMJ_chr5_001320.1; organism=Citrus maxima; type=mRNA; length=366bpback to top protein sequence of CMJ_chr5_001320.1_cmj_v1 >CMJ_chr5_001320.1_cmj_v1 ID=CMJ_chr5_001320.1_cmj_v1; Name=CMJ_chr5_001320.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=122bpback to top mRNA from alignment at chr5:1018236..1018601- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=366bp; location=Sequence derived from: chr5:1018236..1018601- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr5:1018236..1018601- >CMJ_chr5_001320.1_cmj_v1 ID=CMJ_chr5_001320.1_cmj_v1; Name=CMJ_chr5_001320.1; organism=Citrus maxima; type=CDS; length=366bp; location=Sequence derived from: chr5:1018236..1018601- (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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