CMJ_chr5_002200.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr5_002200.1 vs. ExPASy TrEMBL
Match: A0A2H5NPG7|A0A2H5NPG7_CITUN (LysM domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_064030 PE=4 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 1.347e-73 Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 0 Query: 1 MACKLCSQRSSSTGIGIGIADAATSLYYFAFVLVGILLLSSCSSSSSRDKDRDTRVSIEGTSRMVLNKYEYNRPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDLFPGLVIKITAPPF 125
MACKLCSQRSSSTG GIGIADAATSLYY AFVLVGILLLSSCSSSSSRD+DRDT VSIEGTSRMVLNKYEY+RPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDLFPGLVIKITAPPF
Sbjct: 1 MACKLCSQRSSSTGTGIGIADAATSLYYCAFVLVGILLLSSCSSSSSRDQDRDTSVSIEGTSRMVLNKYEYSRPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDLFPGLVIKITAPPF 125
BLAST of CMJ_chr5_002200.1 vs. ExPASy TrEMBL
Match: V4VYB0|V4VYB0_CITCL (LysM domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10022873mg PE=4 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 1.347e-73 Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 0 Query: 1 MACKLCSQRSSSTGIGIGIADAATSLYYFAFVLVGILLLSSCSSSSSRDKDRDTRVSIEGTSRMVLNKYEYNRPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDLFPGLVIKITAPPF 125
MACKLCSQRSSSTG GIGIADAATSLYY AFVLVGILLLSSCSSSSSRD+DRDT VSIEGTSRMVLNKYEY+RPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDLFPGLVIKITAPPF
Sbjct: 1 MACKLCSQRSSSTGTGIGIADAATSLYYCAFVLVGILLLSSCSSSSSRDQDRDTSVSIEGTSRMVLNKYEYSRPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDLFPGLVIKITAPPF 125
BLAST of CMJ_chr5_002200.1 vs. ExPASy TrEMBL
Match: A0A067HDP7|A0A067HDP7_CITSI (LysM domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035523mg PE=4 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 1.347e-73 Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 0 Query: 1 MACKLCSQRSSSTGIGIGIADAATSLYYFAFVLVGILLLSSCSSSSSRDKDRDTRVSIEGTSRMVLNKYEYNRPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDLFPGLVIKITAPPF 125
MACKLCSQRSSSTG GIGIADAATSLYY AFVLVGILLLSSCSSSSSRD+DRDT VSIEGTSRMVLNKYEY+RPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDLFPGLVIKITAPPF
Sbjct: 1 MACKLCSQRSSSTGTGIGIADAATSLYYCAFVLVGILLLSSCSSSSSRDQDRDTSVSIEGTSRMVLNKYEYSRPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDLFPGLVIKITAPPF 125
BLAST of CMJ_chr5_002200.1 vs. ExPASy TrEMBL
Match: A0A6A6MRS1|A0A6A6MRS1_HEVBR (LysM domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_040226 PE=4 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 2.753e-35 Identity = 66/107 (61.68%), Postives = 76/107 (71.03%), Query Frame = 0 Query: 15 IGIGIADAATSLYYFAFVLVGILLLSSCSSSSSRDKDRDTRVSIEGTSRMVLNKYEYNRPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDLFPGLVIKIT 121
I I IADAA+ ++FA VL+G++LL+S SS T+ V +RPCDEIYVVGEGETLHTISDKCGDPFIVE NPHIHDPDD+FPGLVIKIT
Sbjct: 3 ISIAIADAAS--WFFAIVLLGLILLASIRERSS-------------TAEPVKGNQLLDRPCDEIYVVGEGETLHTISDKCGDPFIVEQNPHIHDPDDVFPGLVIKIT 94
BLAST of CMJ_chr5_002200.1 vs. ExPASy TrEMBL
Match: A0A2P2IMV7|A0A2P2IMV7_RHIMU (Peptidoglycan-binding LysM domain-containing family protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 3.534e-35 Identity = 65/112 (58.04%), Postives = 81/112 (72.32%), Query Frame = 0 Query: 10 SSSTGIGIGIADAATSLYYFAFVLVGILLLSSCSSSSSRDKDRDTRVSIEGTSRMVLNKYEYNRPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDLFPGLVIKIT 121
+ +T + IADAA+ +Y A +L+G++L+ S SS D+D S+ G+ + +RPCDEIYVVGEGETLHTISDKCGDPFIVE NPHIHDPDD+FPGLVIKIT
Sbjct: 7 NKTTRMSTAIADAAS--WYCAVILLGLILMGSVREISSGDQDE----SVRGSQLL-------DRPCDEIYVVGEGETLHTISDKCGDPFIVEQNPHIHDPDDVFPGLVIKIT 105
BLAST of CMJ_chr5_002200.1 vs. ExPASy TrEMBL
Match: A0A7N2MI84|A0A7N2MI84_QUELO (LysM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 3.743e-35 Identity = 65/117 (55.56%), Postives = 80/117 (68.38%), Query Frame = 0 Query: 7 SQRSSSTGIGIGIADAATSLYYFAFVLVGILLLSSCSSSSSRDKDRDTRVSIEGTSRMVLNKYEYNRPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDLFPGLVIKITAP 123
S + + I IAD+A+ +Y A L+G++LL+S R+ D ++ G N++ NRPCDEIYVVGEGETLHTISDKCGDPFIVE NPHIHDPDD+FPGLVIKI P
Sbjct: 4 SSTTKAMKASISIADSAS--WYCAITLLGLILLASI-----RETVTDESSTVRG------NQFLNNRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIVTP 107
BLAST of CMJ_chr5_002200.1 vs. ExPASy TrEMBL
Match: A0A2R6RWE2|A0A2R6RWE2_ACTCC (Spore coat assembly protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc01441 PE=4 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.087e-34 Identity = 65/110 (59.09%), Postives = 78/110 (70.91%), Query Frame = 0 Query: 12 STGIGIGIADAATSLYYFAFVLVGILLLSSCSSSSSRDKDRDTRVSIEGTSRMVLNKYEYNRPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDLFPGLVIKIT 121
ST + IADAA+ +Y A LV ++LL+S S+ D DR + G+ + +RPC+EIYVVGEGETLHTISDKCGDPFIVE NPHIHDPDD+FPGLVIKIT
Sbjct: 9 STKTCLAIADAAS--WYCAITLVALILLTSMKVSTLADDDRQ---QVRGSQLL-------DRPCNEIYVVGEGETLHTISDKCGDPFIVEQNPHIHDPDDVFPGLVIKIT 106
BLAST of CMJ_chr5_002200.1 vs. ExPASy TrEMBL
Match: A0A2C9UJE5|A0A2C9UJE5_MANES (LysM domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_14G030100 PE=4 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 1.814e-34 Identity = 66/113 (58.41%), Postives = 74/113 (65.49%), Query Frame = 0 Query: 9 RSSSTGIGIGIADAATSLYYFAFVLVGILLLSSCSSSSSRDKDRDTRVSIEGTSRMVLNKYEYNRPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDLFPGLVIKIT 121
R + + I I DA YFA ++G++LL+S SSS TS V RPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDD+FPGLVIKIT
Sbjct: 6 RKQTIKVSISIIDAVP--LYFAIFILGLILLASIRESSS-------------TSEPVKGNLLLGRPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDVFPGLVIKIT 103
BLAST of CMJ_chr5_002200.1 vs. ExPASy TrEMBL
Match: A0A2C9VSU5|A0A2C9VSU5_MANES (LysM domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_06G142100 PE=4 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 2.809e-34 Identity = 66/113 (58.41%), Postives = 77/113 (68.14%), Query Frame = 0 Query: 9 RSSSTGIGIGIADAATSLYYFAFVLVGILLLSSCSSSSSRDKDRDTRVSIEGTSRMVLNKYEYNRPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDLFPGLVIKIT 121
R T I IAD+A+ ++ A VL+G++LL+S SSS T+ V +RPCDEIYVVGEGETLHTISDKCGDPFIVE NPHIHDPDD+FPGLVIKIT
Sbjct: 6 RKKITIISTAIADSAS--WFCAVVLLGLILLASIRESSS-------------TAEPVKGNLLLDRPCDEIYVVGEGETLHTISDKCGDPFIVEQNPHIHDPDDVFPGLVIKIT 103
BLAST of CMJ_chr5_002200.1 vs. ExPASy TrEMBL
Match: A0A7J0E9V6|A0A7J0E9V6_9ERIC (Peptidoglycan-binding LysM domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_03g0000270 PE=4 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 4.757e-34 Identity = 64/110 (58.18%), Postives = 76/110 (69.09%), Query Frame = 0 Query: 12 STGIGIGIADAATSLYYFAFVLVGILLLSSCSSSSSRDKDRDTRVSIEGTSRMVLNKYEYNRPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDLFPGLVIKIT 121
S + IADAA+ +Y A LV ++LL+S SS D DR + G+ + +RPCDEIYVVGEGETLHTISDKC DP+IVE NPHIHDPDD+FPGLVIKIT
Sbjct: 9 SIKTSLAIADAAS--WYCAITLVALILLTSMKESSLADDDRQ---QVRGSQLL-------DRPCDEIYVVGEGETLHTISDKCDDPYIVEQNPHIHDPDDVFPGLVIKIT 106
BLAST of CMJ_chr5_002200.1 vs. Araport11
Match: AT5G62150.1 (| peptidoglycan-binding LysM domain-containing protein | Chr5:24958325-24958633 FORWARD LENGTH=102 | 201606) HSP 1 Score: 98.5969 bits (244), Expect = 9.755e-28 Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 0 Query: 73 RPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDLFPGLVIKITAPPF 125
+PC+EIY+VGEGETLHTI DKCGDPFIVE NPHIHDPDD+FPGLV+KI PF
Sbjct: 46 KPCEEIYIVGEGETLHTIGDKCGDPFIVERNPHIHDPDDVFPGLVLKIA--PF 96
BLAST of CMJ_chr5_002200.1 vs. Araport11
Match: AT4G25433.1 (| peptidoglycan-binding LysM domain-containing protein | Chr4:13001463-13001795 REVERSE LENGTH=110 | 201606) HSP 1 Score: 97.4413 bits (241), Expect = 3.597e-27 Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = 0 Query: 30 AFVLVGILLLSSCSSSSSRDKDRDTRVSIEGTSRMVLNKYEYNRPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDLFPGLVIKI 120
++ LV +L+L+ S + + + K RPC+E+YVVGEG+TLH+IS+KCGDPFIVE NPHIHDPDD+FPGL+IK+
Sbjct: 14 SYCLVALLILTLAGSVKNSNGGGSGEYYRGRNCEVWRGKQMMERPCEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104
BLAST of CMJ_chr5_002200.1 vs. Araport11
Match: AT3G52790.1 (| peptidoglycan-binding LysM domain-containing protein | Chr3:19566004-19566333 REVERSE LENGTH=109 | 201606) HSP 1 Score: 95.9005 bits (237), Expect = 1.173e-26 Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = 0 Query: 23 ATSLYYFAFVLVGILLLSSCSSSSSRDKDRDTRVSIEGTSRMVLNKYEYNRP-CDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDLFPGLVIKIT 121
A + ++ V ++LL + S ++ T + + M++ Y + RP CDEIY V EGETL TIS+KCGDP+IVE NPHIHD DDLFPGL+I+IT
Sbjct: 10 AEKISWYCAVFAAMMLLMN---SFQVAQEGSTEIVEKQQPSMMITGYSHRRPACDEIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRIT 106 The following BLAST results are available for this feature:
BLAST of CMJ_chr5_002200.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr5_002200.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr5_002200.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 3 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr5_002200.1_cmj_v1 ID=CMJ_chr5_002200.1_cmj_v1; Name=CMJ_chr5_002200.1; organism=Citrus maxima; type=mRNA; length=378bpback to top protein sequence of CMJ_chr5_002200.1_cmj_v1 >CMJ_chr5_002200.1_cmj_v1 ID=CMJ_chr5_002200.1_cmj_v1; Name=CMJ_chr5_002200.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=126bpback to top mRNA from alignment at chr5:1622480..1623275- Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=796bp; location=Sequence derived from: chr5:1622480..1623275- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr5:1622480..1623275- >CMJ_chr5_002200.1_cmj_v1 ID=CMJ_chr5_002200.1_cmj_v1; Name=CMJ_chr5_002200.1; organism=Citrus maxima; type=CDS; length=378bp; location=Sequence derived from: chr5:1622480..1623275- (Citrus maximaback to top |